Wall clock time and date at job start Fri Apr 10 2020 18:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46504 * 109.46797 * 2 1 4 4 C 1.46497 * 119.99968 * 269.99301 * 3 2 1 5 5 C 1.50698 * 109.47333 * 270.00492 * 4 3 2 6 6 H 1.07995 * 120.00438 * 0.02562 * 5 4 3 7 7 C 1.37882 * 119.99820 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99892 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 120.00019 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47242 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47260 * 119.99910 * 9 7 5 12 12 H 1.48503 * 109.47399 * 240.00126 * 9 7 5 13 13 C 1.34782 * 119.99896 * 90.00207 * 3 2 1 14 14 O 1.21279 * 119.99790 * 179.97438 * 13 3 2 15 15 C 1.50705 * 119.99811 * 359.97438 * 13 3 2 16 16 O 1.45197 * 109.46684 * 180.02562 * 15 13 3 17 17 C 1.34229 * 116.99696 * 179.97438 * 16 15 13 18 18 O 1.20822 * 120.00275 * 359.97438 * 17 16 15 19 19 C 1.50708 * 119.99972 * 179.97438 * 17 16 15 20 20 H 1.09003 * 110.43071 * 57.45602 * 19 17 16 21 21 C 1.54625 * 110.48449 * 179.97438 * 19 17 16 22 22 C 1.54481 * 101.79703 * 143.45850 * 21 19 17 23 23 N 1.46825 * 105.44388 * 334.62720 * 22 21 19 24 24 C 1.46504 * 124.33333 * 197.00180 * 23 22 21 25 25 C 1.34414 * 111.31785 * 16.96546 * 23 22 21 26 26 O 1.21279 * 124.94846 * 179.65872 * 25 23 22 27 27 H 1.09001 * 109.47464 * 300.00453 * 1 2 3 28 28 H 1.09001 * 109.46904 * 60.00135 * 1 2 3 29 29 H 1.09002 * 109.47127 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47007 * 240.00334 * 2 1 3 31 31 H 1.09001 * 109.46904 * 119.99865 * 2 1 3 32 32 H 1.09000 * 109.47101 * 30.01183 * 4 3 2 33 33 H 1.09002 * 109.46916 * 150.00344 * 4 3 2 34 34 H 0.97001 * 119.99959 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.47060 * 59.99960 * 15 13 3 36 36 H 1.08999 * 109.46962 * 299.99851 * 15 13 3 37 37 H 1.09002 * 110.96933 * 261.59441 * 21 19 17 38 38 H 1.09003 * 110.97286 * 25.32007 * 21 19 17 39 39 H 1.08998 * 110.24929 * 93.60353 * 22 21 19 40 40 H 1.09000 * 110.24296 * 215.60139 * 22 21 19 41 41 H 1.09000 * 109.46778 * 179.97438 * 24 23 22 42 42 H 1.09000 * 109.47150 * 299.93458 * 24 23 22 43 43 H 1.08998 * 109.46928 * 59.93390 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7037 6 1 4.3427 1.2303 -1.0961 7 6 4.1495 2.3905 -2.8774 8 7 3.3497 3.1274 -3.6170 9 14 5.9134 2.0964 -3.4170 10 1 6.6005 1.2394 -2.4176 11 1 5.9205 1.4183 -4.7381 12 1 6.6217 3.3973 -3.5245 13 6 2.2429 2.0166 1.1673 14 8 2.6476 3.1599 1.1672 15 6 1.9913 1.3063 2.4724 16 8 2.3053 2.1961 3.5759 17 6 2.1333 1.7127 4.8163 18 8 1.7332 0.5837 4.9746 19 6 2.4393 2.5782 6.0115 20 1 1.8507 3.4950 5.9781 21 6 2.1645 1.8066 7.3230 22 6 3.3009 2.3193 8.2352 23 7 4.3741 2.7380 7.3249 24 6 5.7648 2.9551 7.7316 25 6 3.9173 2.8958 6.0707 26 8 4.5918 3.2418 5.1240 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.5817 1.6878 -2.0284 33 1 2.0955 3.1411 -1.1384 34 1 3.6758 3.5179 -4.4429 35 1 2.6211 0.4186 2.5302 36 1 0.9432 1.0125 2.5299 37 1 1.1883 2.0675 7.7318 38 1 2.2449 0.7308 7.1669 39 1 2.9562 3.1672 8.8270 40 1 3.6500 1.5196 8.8884 41 1 6.3531 3.2594 6.8659 42 1 5.8037 3.7372 8.4898 43 1 6.1718 2.0308 8.1416 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000772522730.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:53 Heat of formation + Delta-G solvation = -167.996480 kcal Electronic energy + Delta-G solvation = -26351.042088 eV Core-core repulsion = 22396.037099 eV Total energy + Delta-G solvation = -3955.004989 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.34741 -41.16612 -40.40762 -37.99518 -37.38991 -36.99463 -34.96631 -34.02769 -31.77492 -30.84980 -29.33644 -28.25691 -27.77023 -25.03889 -24.34095 -23.74617 -22.03340 -20.86011 -20.29317 -19.13109 -18.69584 -18.29063 -18.23332 -17.65505 -17.46706 -17.19788 -16.90742 -16.33089 -15.91882 -15.77570 -14.90648 -14.87893 -14.83032 -14.61601 -14.44363 -14.00511 -13.92352 -13.76810 -13.61384 -13.43195 -13.30664 -13.20694 -13.08861 -12.78850 -12.71545 -12.53109 -12.25815 -12.10722 -12.04160 -11.90171 -11.81171 -11.72151 -11.07497 -10.76226 -10.67312 -9.79521 -9.56868 -8.25979 -6.40297 0.75209 1.07768 1.33415 1.36826 1.45857 1.49540 1.59524 1.98615 2.29640 2.41598 3.03817 3.08719 3.20076 3.40267 3.61271 3.85714 3.89056 3.92039 4.04693 4.12541 4.33100 4.36700 4.39970 4.57550 4.63053 4.70588 4.85865 4.86260 4.93477 4.94703 5.01135 5.08363 5.15886 5.21056 5.35542 5.46429 5.52131 5.77783 5.91145 6.01981 6.40233 6.59902 6.68859 6.95557 7.19320 7.34339 8.81728 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.016109 B = 0.003339 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.785063 B = 8384.291746 C = 9646.932573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.093 3.907 3 N -0.595 5.595 4 C 0.263 3.737 5 C -0.547 4.547 6 H 0.051 0.949 7 C 0.009 3.991 8 N -0.926 5.926 9 Si 0.968 3.032 10 H -0.270 1.270 11 H -0.264 1.264 12 H -0.282 1.282 13 C 0.496 3.504 14 O -0.578 6.578 15 C 0.062 3.938 16 O -0.343 6.343 17 C 0.477 3.523 18 O -0.509 6.509 19 C -0.121 4.121 20 H 0.169 0.831 21 C -0.108 4.108 22 C 0.101 3.899 23 N -0.618 5.618 24 C 0.087 3.913 25 C 0.507 3.493 26 O -0.563 6.563 27 H 0.058 0.942 28 H 0.044 0.956 29 H 0.099 0.901 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.033 0.967 33 H -0.002 1.002 34 H 0.268 0.732 35 H 0.112 0.888 36 H 0.130 0.870 37 H 0.138 0.862 38 H 0.092 0.908 39 H 0.109 0.891 40 H 0.112 0.888 41 H 0.055 0.945 42 H 0.091 0.909 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.263 -7.547 28.144 29.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.029 4.029 3 N -0.328 5.328 4 C 0.143 3.857 5 C -0.586 4.586 6 H 0.069 0.931 7 C -0.190 4.190 8 N -0.565 5.565 9 Si 0.792 3.208 10 H -0.195 1.195 11 H -0.189 1.189 12 H -0.208 1.208 13 C 0.283 3.717 14 O -0.457 6.457 15 C -0.015 4.015 16 O -0.258 6.258 17 C 0.320 3.680 18 O -0.398 6.398 19 C -0.143 4.143 20 H 0.186 0.814 21 C -0.146 4.146 22 C -0.020 4.020 23 N -0.352 5.352 24 C -0.053 4.053 25 C 0.293 3.707 26 O -0.441 6.441 27 H 0.077 0.923 28 H 0.064 0.936 29 H 0.118 0.882 30 H 0.100 0.900 31 H 0.114 0.886 32 H 0.051 0.949 33 H 0.016 0.984 34 H 0.077 0.923 35 H 0.130 0.870 36 H 0.148 0.852 37 H 0.156 0.844 38 H 0.111 0.889 39 H 0.127 0.873 40 H 0.130 0.870 41 H 0.074 0.926 42 H 0.110 0.890 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.742 -7.026 27.529 28.804 hybrid contribution 0.985 0.287 -1.167 1.553 sum -3.758 -6.738 26.362 27.468 Atomic orbital electron populations 1.22171 0.93987 1.03888 1.01935 1.21883 0.95818 0.80859 1.04321 1.48215 1.63672 1.15309 1.05573 1.18787 0.95553 0.91633 0.79775 1.21738 0.97920 1.32237 1.06657 0.93084 1.25841 1.02429 0.94376 0.96370 1.70046 1.37664 1.34001 1.14827 0.85369 0.78943 0.78031 0.78467 1.19473 1.18898 1.20762 1.20590 0.78396 0.86697 0.85970 1.90698 1.46888 1.20414 1.87735 1.22867 1.04811 0.91821 0.82002 1.86658 1.78347 1.45505 1.15324 1.23430 0.73684 0.86717 0.84172 1.90632 1.43047 1.19569 1.86531 1.22078 0.96750 1.02860 0.92627 0.81356 1.22841 1.02042 1.01015 0.88680 1.22536 0.85092 1.02347 0.91983 1.48329 1.11406 1.66870 1.08622 1.21780 0.79097 1.03338 1.01131 1.20667 0.89303 0.77270 0.83473 1.90859 1.64031 1.48567 1.40674 0.92285 0.93640 0.88204 0.89987 0.88605 0.94927 0.98371 0.92280 0.86993 0.85201 0.84372 0.88936 0.87329 0.86998 0.92593 0.89040 0.89592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.06 10.24 71.98 0.74 -3.32 16 2 C 0.09 2.94 5.93 86.38 0.51 3.45 16 3 N -0.60 -26.72 2.46 -826.14 -2.03 -28.75 16 4 C 0.26 14.77 5.16 85.63 0.44 15.21 16 5 C -0.55 -32.96 9.39 25.60 0.24 -32.72 16 6 H 0.05 3.08 7.81 -2.91 -0.02 3.05 16 7 C 0.01 0.54 5.46 84.66 0.46 1.00 16 8 N -0.93 -57.40 13.29 21.45 0.28 -57.12 16 9 Si 0.97 46.81 29.54 68.60 2.03 48.83 16 10 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 11 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 12 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 13 C 0.50 23.08 7.75 87.66 0.68 23.76 16 14 O -0.58 -33.79 16.08 15.77 0.25 -33.54 16 15 C 0.06 2.12 4.50 71.24 0.32 2.44 16 16 O -0.34 -12.79 9.50 -44.69 -0.42 -13.22 16 17 C 0.48 13.59 7.22 71.24 0.51 14.11 16 18 O -0.51 -14.30 15.24 21.98 0.33 -13.97 16 19 C -0.12 -2.42 3.44 -11.54 -0.04 -2.46 16 20 H 0.17 2.56 8.14 -2.39 -0.02 2.54 16 21 C -0.11 -1.02 6.48 31.65 0.20 -0.81 16 22 C 0.10 0.65 7.35 86.82 0.64 1.28 16 23 N -0.62 -10.30 3.33 -842.74 -2.81 -13.11 16 24 C 0.09 1.16 11.14 127.77 1.42 2.59 16 25 C 0.51 13.56 7.44 87.90 0.65 14.21 16 26 O -0.56 -22.47 16.96 -3.02 -0.05 -22.52 16 27 H 0.06 1.38 7.22 -2.39 -0.02 1.36 16 28 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.08 2.69 8.07 -2.39 -0.02 2.67 16 31 H 0.10 2.42 6.44 -2.39 -0.02 2.41 16 32 H 0.03 1.82 8.07 -2.39 -0.02 1.80 16 33 H 0.00 -0.12 7.42 -2.39 -0.02 -0.14 16 34 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 35 H 0.11 3.44 7.39 -2.39 -0.02 3.42 16 36 H 0.13 3.51 7.18 -2.39 -0.02 3.49 16 37 H 0.14 0.35 8.14 -2.39 -0.02 0.33 16 38 H 0.09 1.13 7.00 -2.39 -0.02 1.11 16 39 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 40 H 0.11 0.22 8.14 -2.39 -0.02 0.20 16 41 H 0.06 1.10 7.53 -2.39 -0.02 1.09 16 42 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -93.49 366.78 5.39 -88.10 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: 1.01 Total: 6.54 kcal Atomic # 6 Polarization: 31.96 SS G_CDS: 6.79 Total: 38.75 kcal Atomic # 7 Polarization: -94.42 SS G_CDS: -4.55 Total: -98.97 kcal Atomic # 8 Polarization: -83.36 SS G_CDS: 0.11 Total: -83.25 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.83 kcal Total: -93.49 5.39 -88.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772522730.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.898 kcal (2) G-P(sol) polarization free energy of solvation -93.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds