Wall clock time and date at job start Fri Apr 10 2020 18:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46502 * 109.47268 * 2 1 4 4 C 1.46495 * 120.00052 * 269.99876 * 3 2 1 5 5 C 1.50699 * 109.47159 * 270.00119 * 4 3 2 6 6 H 1.08000 * 120.00056 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99723 * 180.02562 * 5 4 3 8 8 N 1.31509 * 120.00219 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99571 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47577 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47275 * 119.99808 * 9 7 5 12 12 H 1.48512 * 109.47042 * 239.99764 * 9 7 5 13 13 C 1.34783 * 119.99913 * 90.00056 * 3 2 1 14 14 O 1.21273 * 119.99425 * 180.02562 * 13 3 2 15 15 C 1.50704 * 119.99959 * 359.97438 * 13 3 2 16 16 O 1.45194 * 109.46863 * 179.97438 * 15 13 3 17 17 C 1.34234 * 117.00062 * 179.97438 * 16 15 13 18 18 O 1.20827 * 119.99437 * 0.02562 * 17 16 15 19 19 C 1.50691 * 120.00329 * 180.02562 * 17 16 15 20 20 H 1.09010 * 110.53760 * 302.61795 * 19 17 16 21 21 C 1.54625 * 110.48899 * 180.02562 * 19 17 16 22 22 C 1.54481 * 101.79703 * 266.10150 * 21 19 17 23 23 N 1.46825 * 105.44388 * 334.62720 * 22 21 19 24 24 C 1.46504 * 124.33333 * 197.00180 * 23 22 21 25 25 C 1.34414 * 111.31785 * 16.96546 * 23 22 21 26 26 O 1.21279 * 124.94846 * 179.65872 * 25 23 22 27 27 H 1.09006 * 109.47326 * 300.00161 * 1 2 3 28 28 H 1.09004 * 109.47049 * 60.00208 * 1 2 3 29 29 H 1.09002 * 109.47393 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47326 * 239.99839 * 2 1 3 31 31 H 1.09004 * 109.47049 * 119.99792 * 2 1 3 32 32 H 1.09001 * 109.46731 * 29.99817 * 4 3 2 33 33 H 1.09003 * 109.47517 * 149.99857 * 4 3 2 34 34 H 0.97002 * 119.99857 * 180.02562 * 8 7 5 35 35 H 1.09002 * 109.46672 * 59.99918 * 15 13 3 36 36 H 1.08997 * 109.46938 * 300.00290 * 15 13 3 37 37 H 1.09002 * 110.96933 * 24.23740 * 21 19 17 38 38 H 1.09003 * 110.97286 * 147.96307 * 21 19 17 39 39 H 1.08998 * 110.24929 * 93.60353 * 22 21 19 40 40 H 1.09000 * 110.24296 * 215.60139 * 22 21 19 41 41 H 1.09000 * 109.46778 * 179.97438 * 24 23 22 42 42 H 1.09000 * 109.47150 * 299.93458 * 24 23 22 43 43 H 1.08998 * 109.46928 * 59.93390 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7037 6 1 4.3429 1.2308 -1.0957 7 6 4.1494 2.3904 -2.8774 8 7 3.3494 3.1265 -3.6175 9 14 5.9138 2.0974 -3.4162 10 1 6.6015 1.2422 -2.4158 11 1 5.9219 1.4189 -4.7371 12 1 6.6211 3.3988 -3.5240 13 6 2.2430 2.0166 1.1673 14 8 2.6468 3.1601 1.1672 15 6 1.9912 1.3063 2.4724 16 8 2.3065 2.1956 3.5759 17 6 2.1346 1.7123 4.8164 18 8 1.7344 0.5832 4.9746 19 6 2.4407 2.5776 6.0115 20 1 3.4747 2.9213 5.9800 21 6 2.1672 1.8057 7.3230 22 6 0.7182 2.2336 7.6451 23 7 0.5421 3.5381 6.9947 24 6 -0.5315 4.4825 7.3142 25 6 1.4925 3.7551 6.0694 26 8 1.5780 4.7502 5.3814 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.5817 1.6876 -2.0283 33 1 2.0956 3.1411 -1.1384 34 1 3.6755 3.5170 -4.4434 35 1 2.6211 0.4186 2.5302 36 1 0.9432 1.0126 2.5299 37 1 2.2295 0.7293 7.1623 38 1 2.8513 2.1206 8.1110 39 1 0.0118 1.5106 7.2373 40 1 0.5833 2.3273 8.7226 41 1 -0.4323 5.3701 6.6894 42 1 -1.4968 4.0124 7.1261 43 1 -0.4644 4.7671 8.3642 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000772522738.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:57 Heat of formation + Delta-G solvation = -167.422925 kcal Electronic energy + Delta-G solvation = -26417.689449 eV Core-core repulsion = 22462.709331 eV Total energy + Delta-G solvation = -3954.980118 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.43036 -41.17483 -40.40542 -38.06862 -37.34045 -37.00258 -34.95928 -34.03062 -31.78333 -30.86577 -29.32229 -28.26050 -27.76630 -25.07293 -24.39710 -23.83122 -22.01338 -20.87003 -20.30730 -19.38697 -18.66928 -18.27014 -18.12126 -17.74023 -17.55836 -17.13104 -16.66618 -16.32712 -16.15944 -15.61721 -14.98878 -14.88704 -14.82128 -14.62444 -14.50456 -14.04135 -13.96687 -13.79737 -13.63270 -13.52056 -13.31334 -13.23314 -13.07965 -12.71202 -12.53364 -12.52758 -12.26853 -12.21050 -12.09075 -11.89640 -11.82979 -11.71195 -11.12060 -10.77449 -10.66824 -9.82492 -9.57412 -8.24836 -6.39651 0.69706 1.00279 1.35561 1.38758 1.47842 1.51122 1.58537 1.94508 2.29705 2.42367 3.05282 3.07412 3.25786 3.38701 3.49466 3.80607 3.89384 3.91272 4.11524 4.13250 4.32346 4.35770 4.39206 4.56713 4.61406 4.67397 4.84094 4.84419 4.91969 4.92687 5.00174 5.05894 5.13150 5.18909 5.33892 5.43774 5.52389 5.77670 5.88213 6.02099 6.36968 6.59126 6.69737 6.91899 7.19199 7.34600 8.83087 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.019879 B = 0.003059 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.154284 B = 9151.426345 C = 9494.277891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.094 3.906 3 N -0.595 5.595 4 C 0.263 3.737 5 C -0.545 4.545 6 H 0.056 0.944 7 C 0.007 3.993 8 N -0.928 5.928 9 Si 0.971 3.029 10 H -0.266 1.266 11 H -0.267 1.267 12 H -0.283 1.283 13 C 0.495 3.505 14 O -0.579 6.579 15 C 0.062 3.938 16 O -0.350 6.350 17 C 0.479 3.521 18 O -0.500 6.500 19 C -0.124 4.124 20 H 0.157 0.843 21 C -0.107 4.107 22 C 0.095 3.905 23 N -0.617 5.617 24 C 0.087 3.913 25 C 0.512 3.488 26 O -0.561 6.561 27 H 0.054 0.946 28 H 0.042 0.958 29 H 0.101 0.899 30 H 0.083 0.917 31 H 0.101 0.899 32 H 0.031 0.969 33 H -0.005 1.005 34 H 0.268 0.732 35 H 0.127 0.873 36 H 0.122 0.878 37 H 0.117 0.883 38 H 0.131 0.869 39 H 0.079 0.921 40 H 0.125 0.875 41 H 0.059 0.941 42 H 0.080 0.920 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.659 -9.589 26.618 29.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.028 4.028 3 N -0.327 5.327 4 C 0.142 3.858 5 C -0.583 4.583 6 H 0.074 0.926 7 C -0.192 4.192 8 N -0.568 5.568 9 Si 0.795 3.205 10 H -0.190 1.190 11 H -0.192 1.192 12 H -0.209 1.209 13 C 0.282 3.718 14 O -0.459 6.459 15 C -0.015 4.015 16 O -0.265 6.265 17 C 0.321 3.679 18 O -0.388 6.388 19 C -0.146 4.146 20 H 0.174 0.826 21 C -0.144 4.144 22 C -0.026 4.026 23 N -0.351 5.351 24 C -0.054 4.054 25 C 0.298 3.702 26 O -0.439 6.439 27 H 0.073 0.927 28 H 0.062 0.938 29 H 0.119 0.881 30 H 0.102 0.898 31 H 0.119 0.881 32 H 0.049 0.951 33 H 0.013 0.987 34 H 0.077 0.923 35 H 0.145 0.855 36 H 0.139 0.861 37 H 0.135 0.865 38 H 0.149 0.851 39 H 0.097 0.903 40 H 0.143 0.857 41 H 0.078 0.922 42 H 0.098 0.902 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -7.653 -8.689 26.123 28.574 hybrid contribution 0.737 0.469 -1.174 1.463 sum -6.916 -8.220 24.949 27.163 Atomic orbital electron populations 1.22183 0.94401 1.03876 1.01682 1.21893 0.95503 0.80819 1.04601 1.48217 1.63591 1.15354 1.05541 1.18789 0.95766 0.91495 0.79779 1.21736 0.97735 1.32232 1.06642 0.92600 1.25890 1.02582 0.94357 0.96396 1.70060 1.37797 1.34107 1.14828 0.85325 0.78741 0.77995 0.78471 1.18971 1.19195 1.20906 1.20622 0.78460 0.86661 0.86031 1.90708 1.47111 1.20338 1.87751 1.22899 1.04809 0.92017 0.81732 1.86652 1.78523 1.45847 1.15457 1.23268 0.74004 0.86678 0.83911 1.90634 1.42192 1.19535 1.86401 1.22017 1.04264 0.95267 0.93077 0.82593 1.22836 0.96999 1.02483 0.92124 1.22497 0.97282 0.82226 1.00605 1.48383 1.27960 1.20597 1.38174 1.21797 0.88815 0.92086 1.02697 1.20576 0.82844 0.86977 0.79829 1.90805 1.74734 1.32669 1.45664 0.92676 0.93833 0.88070 0.89809 0.88131 0.95145 0.98670 0.92342 0.85542 0.86059 0.86493 0.85075 0.90312 0.85699 0.92195 0.90174 0.88602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.08 10.24 71.98 0.74 -3.35 16 2 C 0.09 2.85 5.93 86.38 0.51 3.36 16 3 N -0.59 -26.12 2.46 -826.14 -2.03 -28.15 16 4 C 0.26 14.58 5.16 85.63 0.44 15.02 16 5 C -0.54 -32.09 9.39 25.60 0.24 -31.85 16 6 H 0.06 3.24 7.81 -2.91 -0.02 3.22 16 7 C 0.01 0.40 5.46 84.66 0.46 0.86 16 8 N -0.93 -57.24 13.29 21.45 0.28 -56.96 16 9 Si 0.97 45.73 29.54 68.60 2.03 47.75 16 10 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 11 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 12 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 13 C 0.50 22.48 7.75 87.66 0.68 23.16 16 14 O -0.58 -33.48 16.08 15.79 0.25 -33.22 16 15 C 0.06 2.03 4.50 71.24 0.32 2.35 16 16 O -0.35 -12.55 9.76 -45.10 -0.44 -12.99 16 17 C 0.48 12.92 7.27 71.23 0.52 13.43 16 18 O -0.50 -12.75 15.22 21.96 0.33 -12.42 16 19 C -0.12 -2.51 3.44 -11.55 -0.04 -2.55 16 20 H 0.16 2.78 8.14 -2.38 -0.02 2.76 16 21 C -0.11 -1.00 6.50 31.65 0.21 -0.80 16 22 C 0.10 0.85 7.35 86.82 0.64 1.49 16 23 N -0.62 -10.72 3.33 -842.74 -2.81 -13.53 16 24 C 0.09 1.16 11.14 127.77 1.42 2.59 16 25 C 0.51 13.52 7.33 87.90 0.64 14.17 16 26 O -0.56 -21.42 17.35 -3.03 -0.05 -21.48 16 27 H 0.05 1.32 7.22 -2.38 -0.02 1.30 16 28 H 0.04 1.26 8.14 -2.38 -0.02 1.24 16 29 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.08 2.64 8.07 -2.38 -0.02 2.62 16 31 H 0.10 2.34 6.44 -2.38 -0.02 2.33 16 32 H 0.03 1.69 8.07 -2.39 -0.02 1.67 16 33 H 0.00 -0.31 7.42 -2.39 -0.02 -0.33 16 34 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 35 H 0.13 3.37 7.39 -2.39 -0.02 3.35 16 36 H 0.12 3.29 7.18 -2.39 -0.02 3.27 16 37 H 0.12 1.06 6.97 -2.39 -0.02 1.04 16 38 H 0.13 0.42 8.14 -2.39 -0.02 0.40 16 39 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.13 0.23 8.14 -2.39 -0.02 0.21 16 41 H 0.06 1.14 7.53 -2.39 -0.02 1.12 16 42 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -90.73 367.35 5.37 -85.36 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: 1.01 Total: 7.74 kcal Atomic # 6 Polarization: 31.11 SS G_CDS: 6.78 Total: 37.89 kcal Atomic # 7 Polarization: -94.08 SS G_CDS: -4.55 Total: -98.63 kcal Atomic # 8 Polarization: -80.20 SS G_CDS: 0.10 Total: -80.11 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.75 kcal Total: -90.73 5.37 -85.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772522738.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.063 kcal (2) G-P(sol) polarization free energy of solvation -90.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds