Wall clock time and date at job start Fri Apr 10 2020 18:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21279 * 119.99926 * 2 1 4 4 N 1.34775 * 119.99773 * 179.97438 * 2 1 3 5 5 C 1.46499 * 120.00012 * 180.02562 * 4 2 1 6 6 C 1.50696 * 109.47480 * 180.02562 * 5 4 2 7 7 O 1.21284 * 119.99909 * 359.97438 * 6 5 4 8 8 N 1.34779 * 120.00395 * 180.02562 * 6 5 4 9 9 C 1.47425 * 125.64394 * 359.68911 * 8 6 5 10 10 C 1.54691 * 104.94180 * 204.07463 * 9 8 6 11 11 C 1.55166 * 101.67542 * 323.27889 * 10 9 8 12 12 C 1.47016 * 125.65325 * 179.97438 * 8 6 5 13 13 H 1.09010 * 109.88216 * 59.32962 * 12 8 6 14 14 C 1.50706 * 109.88140 * 298.32342 * 12 8 6 15 15 O 1.20822 * 119.99713 * 359.97438 * 14 12 8 16 16 O 1.34234 * 119.99778 * 179.97438 * 14 12 8 17 17 C 1.45201 * 116.99676 * 179.97438 * 16 14 12 18 18 C 1.53002 * 109.47076 * 180.02562 * 17 16 14 19 19 C 1.50697 * 109.46982 * 180.02562 * 18 17 16 20 20 H 1.07999 * 120.00157 * 359.97438 * 19 18 17 21 21 C 1.37883 * 119.99429 * 179.97438 * 19 18 17 22 22 N 1.31509 * 120.00438 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99546 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47025 * 60.00589 * 23 21 19 25 25 H 1.48501 * 109.46890 * 180.02562 * 23 21 19 26 26 H 1.48495 * 109.47169 * 300.00337 * 23 21 19 27 27 H 1.09002 * 109.47152 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.46980 * 240.00238 * 1 2 3 29 29 H 1.09004 * 109.47113 * 120.00219 * 1 2 3 30 30 H 0.96998 * 120.00166 * 0.02562 * 4 2 1 31 31 H 1.09001 * 109.47271 * 300.00468 * 5 4 2 32 32 H 1.09000 * 109.47392 * 59.99750 * 5 4 2 33 33 H 1.08997 * 110.36964 * 323.00624 * 9 8 6 34 34 H 1.09000 * 110.36624 * 85.32919 * 9 8 6 35 35 H 1.09002 * 111.10232 * 205.11356 * 10 9 8 36 36 H 1.09001 * 110.84869 * 81.33513 * 10 9 8 37 37 H 1.09007 * 110.71522 * 276.97419 * 11 10 9 38 38 H 1.09001 * 110.71954 * 153.69941 * 11 10 9 39 39 H 1.09000 * 109.46896 * 300.00118 * 17 16 14 40 40 H 1.09000 * 109.47034 * 59.99791 * 17 16 14 41 41 H 1.09008 * 109.46590 * 300.00083 * 18 17 16 42 42 H 1.09003 * 109.46778 * 59.99525 * 18 17 16 43 43 H 0.96993 * 120.00188 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6458 -1.1673 0.0011 6 6 4.1482 -2.5880 0.0010 7 8 3.3601 -3.5099 0.0009 8 7 5.4733 -2.8344 0.0019 9 6 6.5369 -1.8136 -0.0033 10 6 7.7695 -2.5249 -0.6097 11 6 7.6259 -3.9549 -0.0249 12 6 6.0974 -4.1655 0.0025 13 1 5.7820 -4.7232 -0.8794 14 6 5.7053 -4.9149 1.2498 15 8 4.9777 -4.3958 2.0628 16 8 6.1645 -6.1590 1.4575 17 6 5.7462 -6.8203 2.6807 18 6 6.3653 -8.2182 2.7421 19 6 5.9307 -8.9047 4.0112 20 1 5.2785 -8.3949 4.7049 21 6 6.3657 -10.1838 4.2867 22 7 7.1602 -10.8044 3.4423 23 14 5.8276 -11.0346 5.8603 24 1 4.3469 -11.1471 5.8807 25 1 6.4284 -12.3913 5.9198 26 1 6.2800 -10.2416 7.0314 27 1 -0.3633 1.0277 -0.0005 28 1 -0.3633 -0.5138 0.8900 29 1 -0.3633 -0.5139 -0.8900 30 1 1.6959 -2.0072 0.0005 31 1 4.0096 -0.6536 -0.8888 32 1 4.0089 -0.6532 0.8911 33 1 6.2454 -0.9651 -0.6223 34 1 6.7531 -1.4858 1.0135 35 1 8.6959 -2.0575 -0.2760 36 1 7.7120 -2.5403 -1.6981 37 1 8.0396 -4.0029 0.9825 38 1 8.1048 -4.6873 -0.6749 39 1 6.0783 -6.2382 3.5403 40 1 4.6594 -6.9028 2.6957 41 1 6.0335 -8.8005 1.8823 42 1 7.4521 -8.1351 2.7271 43 1 7.4665 -11.7040 3.6363 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000772747446.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:05 Heat of formation + Delta-G solvation = -161.767398 kcal Electronic energy + Delta-G solvation = -25859.451081 eV Core-core repulsion = 21904.716205 eV Total energy + Delta-G solvation = -3954.734876 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.02916 -39.95120 -39.14050 -37.66539 -35.98757 -34.70565 -33.36981 -32.30018 -30.81081 -30.56244 -29.71439 -27.32373 -25.29286 -24.10277 -22.16795 -21.48672 -20.88971 -20.69893 -19.37607 -17.95127 -17.77625 -16.94806 -16.55189 -16.42028 -16.11470 -15.93589 -15.68287 -15.50242 -14.88781 -14.55822 -14.37641 -13.85057 -13.67248 -13.43613 -13.34164 -13.04014 -12.91742 -12.82159 -12.48553 -12.34925 -12.27041 -11.95821 -11.67365 -11.29012 -11.17039 -11.05785 -10.73718 -10.70518 -10.28883 -10.24302 -10.23028 -9.68429 -9.64870 -9.50663 -9.34321 -9.01272 -8.45116 -6.11418 -4.15758 2.13349 2.31065 2.39047 2.54346 2.97414 3.25578 3.29439 3.33348 3.37964 3.96505 4.11645 4.36886 4.38100 4.51415 4.58776 4.86265 4.89139 4.94025 4.96271 5.03519 5.08245 5.12748 5.25068 5.27069 5.41422 5.46868 5.50739 5.58670 5.77096 5.85311 5.97009 6.07392 6.11100 6.62785 6.97612 7.06526 7.17685 7.54277 7.61056 7.76148 7.85868 7.88246 8.18064 8.25732 8.89391 9.48546 11.00050 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.016745 B = 0.002704 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.743952 B =10351.021052 C =11690.323742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.514 3.486 3 O -0.551 6.551 4 N -0.720 5.720 5 C 0.108 3.892 6 C 0.532 3.468 7 O -0.519 6.519 8 N -0.603 5.603 9 C 0.094 3.906 10 C -0.131 4.131 11 C -0.118 4.118 12 C 0.146 3.854 13 H 0.115 0.885 14 C 0.447 3.553 15 O -0.501 6.501 16 O -0.355 6.355 17 C 0.077 3.923 18 C 0.026 3.974 19 C -0.527 4.527 20 H 0.058 0.942 21 C 0.061 3.939 22 N -0.890 5.890 23 Si 0.900 3.100 24 H -0.275 1.275 25 H -0.285 1.285 26 H -0.275 1.275 27 H 0.093 0.907 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.414 0.586 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.102 0.898 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.028 0.972 42 H 0.028 0.972 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.009 21.276 -11.996 24.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.302 3.698 3 O -0.429 6.429 4 N -0.376 5.376 5 C -0.019 4.019 6 C 0.320 3.680 7 O -0.394 6.394 8 N -0.338 5.338 9 C -0.029 4.029 10 C -0.169 4.169 11 C -0.156 4.156 12 C 0.041 3.959 13 H 0.132 0.868 14 C 0.287 3.713 15 O -0.389 6.389 16 O -0.271 6.271 17 C 0.005 3.995 18 C -0.011 4.011 19 C -0.565 4.565 20 H 0.076 0.924 21 C -0.141 4.141 22 N -0.529 5.529 23 Si 0.727 3.273 24 H -0.201 1.201 25 H -0.211 1.211 26 H -0.201 1.201 27 H 0.112 0.888 28 H 0.109 0.891 29 H 0.108 0.892 30 H 0.252 0.748 31 H 0.116 0.884 32 H 0.118 0.882 33 H 0.104 0.896 34 H 0.095 0.905 35 H 0.111 0.889 36 H 0.101 0.899 37 H 0.105 0.895 38 H 0.121 0.879 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.047 0.953 42 H 0.046 0.954 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.233 21.478 -11.738 24.689 hybrid contribution -0.528 -1.027 1.098 1.593 sum -3.761 20.452 -10.640 23.359 Atomic orbital electron populations 1.21902 0.91010 1.05619 1.04691 1.20843 0.90837 0.82900 0.75249 1.90721 1.70913 1.31398 1.49864 1.45822 1.05903 1.10199 1.75644 1.20973 0.82496 0.93716 1.04738 1.20099 0.80860 0.91219 0.75859 1.90745 1.54018 1.45949 1.48681 1.48162 1.05130 1.06644 1.73910 1.22467 0.87121 0.91295 1.01981 1.22793 0.97838 0.94979 1.01305 1.22629 0.91026 0.98091 1.03882 1.21126 0.94978 0.84323 0.95502 0.86786 1.23622 0.78112 0.81639 0.87930 1.90628 1.33785 1.68661 1.45823 1.86501 1.67821 1.27271 1.45524 1.23638 0.99586 0.95225 0.81082 1.19159 0.96948 0.86948 0.98041 1.20941 1.30721 0.99861 1.05011 0.92360 1.24976 0.94859 0.97149 0.97111 1.69955 1.33473 1.13430 1.35999 0.86530 0.79011 0.78541 0.83211 1.20050 1.21088 1.20075 0.88768 0.89072 0.89166 0.74771 0.88365 0.88228 0.89593 0.90535 0.88864 0.89851 0.89504 0.87941 0.92484 0.92381 0.95344 0.95361 0.92640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.06 10.32 36.01 0.37 -0.69 16 2 C 0.51 5.23 7.94 -10.98 -0.09 5.14 16 3 O -0.55 -7.57 17.09 5.56 0.09 -7.48 16 4 N -0.72 -7.25 5.53 -61.47 -0.34 -7.59 16 5 C 0.11 1.08 5.16 -5.20 -0.03 1.06 16 6 C 0.53 6.81 7.09 -10.99 -0.08 6.73 16 7 O -0.52 -8.63 14.96 -8.27 -0.12 -8.75 16 8 N -0.60 -6.78 2.84 -164.46 -0.47 -7.24 16 9 C 0.09 0.65 6.68 -2.65 -0.02 0.64 16 10 C -0.13 -0.73 7.07 -24.70 -0.17 -0.91 16 11 C -0.12 -1.04 6.45 -24.89 -0.16 -1.20 16 12 C 0.15 1.83 3.37 -68.11 -0.23 1.60 16 13 H 0.11 1.36 8.14 -51.92 -0.42 0.93 16 14 C 0.45 8.03 6.76 36.01 0.24 8.28 16 15 O -0.50 -10.47 14.82 -23.90 -0.35 -10.82 16 16 O -0.36 -7.17 10.20 -39.27 -0.40 -7.57 16 17 C 0.08 1.76 5.40 37.16 0.20 1.97 16 18 C 0.03 0.69 5.35 -27.88 -0.15 0.54 16 19 C -0.53 -14.97 9.11 -34.44 -0.31 -15.29 16 20 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 21 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 22 N -0.89 -26.38 13.29 55.43 0.74 -25.64 16 23 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 25 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 H 0.09 0.55 8.12 -51.93 -0.42 0.13 16 28 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.41 4.09 7.44 -40.82 -0.30 3.79 16 31 H 0.10 0.80 7.84 -51.93 -0.41 0.39 16 32 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.09 0.40 7.48 -51.93 -0.39 0.01 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.09 0.85 7.84 -51.93 -0.41 0.44 16 38 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.06 1.29 8.13 -51.93 -0.42 0.86 16 40 H 0.06 1.36 8.13 -51.93 -0.42 0.93 16 41 H 0.03 0.79 8.14 -51.92 -0.42 0.36 16 42 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 368.20 15.07 5.55 5.55 Total: -1.00 -37.24 368.20 -7.39 -44.63 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -6.54 Total: -1.10 kcal Atomic # 6 Polarization: 10.04 SS G_CDS: -0.52 Total: 9.52 kcal Atomic # 7 Polarization: -40.41 SS G_CDS: -0.07 Total: -40.48 kcal Atomic # 8 Polarization: -33.84 SS G_CDS: -0.78 Total: -34.62 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -37.24 -7.39 -44.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772747446.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.140 kcal (2) G-P(sol) polarization free energy of solvation -37.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds