Wall clock time and date at job start Fri Apr 10 2020 18:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46502 * 109.47143 * 2 1 4 4 C 1.46494 * 120.00241 * 270.00311 * 3 2 1 5 5 C 1.50707 * 109.47196 * 269.99893 * 4 3 2 6 6 H 1.07996 * 119.99484 * 0.02562 * 5 4 3 7 7 C 1.37871 * 119.99991 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00304 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99837 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47236 * 90.00165 * 9 7 5 11 11 H 1.48493 * 109.47172 * 210.00182 * 9 7 5 12 12 H 1.48495 * 109.47165 * 330.00254 * 9 7 5 13 13 C 1.34781 * 119.99572 * 89.99930 * 3 2 1 14 14 O 1.21283 * 119.99830 * 179.97438 * 13 3 2 15 15 C 1.50695 * 120.00102 * 0.02562 * 13 3 2 16 16 O 1.45208 * 109.47103 * 179.97438 * 15 13 3 17 17 C 1.34223 * 117.00133 * 180.02562 * 16 15 13 18 18 O 1.20830 * 120.00020 * 359.97438 * 17 16 15 19 19 C 1.50697 * 120.00031 * 180.02562 * 17 16 15 20 20 H 1.09001 * 110.21589 * 320.46895 * 19 17 16 21 21 C 1.54831 * 110.33243 * 82.41989 * 19 17 16 22 22 C 1.54631 * 101.60220 * 93.62136 * 21 19 17 23 23 C 1.51281 * 104.31067 * 24.82962 * 22 21 19 24 24 O 1.21288 * 124.93742 * 163.64367 * 23 22 21 25 25 N 1.34418 * 110.11952 * 343.67722 * 23 22 21 26 26 C 1.46493 * 124.35106 * 179.57371 * 25 23 22 27 27 H 1.08994 * 109.46927 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46859 * 299.99992 * 1 2 3 29 29 H 1.08997 * 109.46849 * 59.99796 * 1 2 3 30 30 H 1.09004 * 109.46859 * 240.00008 * 2 1 3 31 31 H 1.08996 * 109.47245 * 120.00571 * 2 1 3 32 32 H 1.09004 * 109.46985 * 29.99562 * 4 3 2 33 33 H 1.09000 * 109.47408 * 149.99771 * 4 3 2 34 34 H 0.97000 * 120.00031 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.47380 * 60.00290 * 15 13 3 36 36 H 1.08990 * 109.47211 * 299.99749 * 15 13 3 37 37 H 1.08999 * 111.07622 * 335.54679 * 21 19 17 38 38 H 1.08994 * 111.01534 * 211.67491 * 21 19 17 39 39 H 1.09002 * 110.48855 * 266.08223 * 22 21 19 40 40 H 1.08998 * 110.48570 * 143.57284 * 22 21 19 41 41 H 1.09008 * 109.47170 * 359.97438 * 26 25 23 42 42 H 1.09005 * 109.47305 * 119.97497 * 26 25 23 43 43 H 1.08996 * 109.47274 * 239.97747 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 -1.2686 5 6 3.6858 1.8351 -1.7038 6 1 4.3426 1.2303 -1.0962 7 6 4.1491 2.3898 -2.8779 8 7 3.3491 3.1259 -3.6180 9 14 5.9135 2.0969 -3.4169 10 1 5.9776 0.8755 -4.2592 11 1 6.3920 3.2641 -4.2002 12 1 6.7736 1.9181 -2.2196 13 6 2.2430 2.0165 1.1673 14 8 2.6477 3.1598 1.1673 15 6 1.9923 1.3059 2.4723 16 8 2.3073 2.1953 3.5760 17 6 2.1373 1.7112 4.8163 18 8 1.7380 0.5818 4.9746 19 6 2.4432 2.5767 6.0115 20 1 3.3416 3.1666 5.8293 21 6 1.2457 3.5076 6.3223 22 6 0.4705 2.6773 7.3714 23 6 1.5205 1.7798 7.9882 24 8 1.3931 1.1785 9.0338 25 7 2.6155 1.7461 7.2092 26 6 3.8253 0.9794 7.5165 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.5817 1.6877 -2.0283 33 1 2.0955 3.1411 -1.1383 34 1 3.6751 3.5164 -4.4439 35 1 2.6229 0.4186 2.5299 36 1 0.9446 1.0114 2.5302 37 1 0.6391 3.6762 5.4325 38 1 1.5851 4.4527 6.7460 39 1 -0.3050 2.0819 6.8894 40 1 0.0343 3.3298 8.1277 41 1 3.6917 0.4531 8.4617 42 1 4.0095 0.2570 6.7213 43 1 4.6750 1.6576 7.5953 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000786179707.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:13 Heat of formation + Delta-G solvation = -142.983060 kcal Electronic energy + Delta-G solvation = -26297.424732 eV Core-core repulsion = 22343.504406 eV Total energy + Delta-G solvation = -3953.920326 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.46334 -40.05102 -38.95878 -36.95033 -36.21961 -35.37876 -33.23312 -32.89399 -30.26848 -29.82119 -28.43962 -27.03891 -26.52082 -23.60112 -23.13044 -22.58194 -21.35332 -19.78562 -18.78086 -18.34998 -17.24280 -17.06367 -16.66711 -16.42516 -16.25193 -15.74731 -15.61579 -14.98866 -14.72993 -14.29354 -14.13855 -13.95805 -13.61688 -13.48660 -13.18775 -13.10431 -12.88658 -12.61250 -12.56802 -12.22919 -12.11643 -11.90889 -11.75668 -11.67597 -11.29099 -11.00871 -10.95192 -10.81231 -10.69383 -10.58953 -10.19771 -10.19511 -9.71723 -9.26503 -9.06226 -8.49650 -7.82494 -6.10737 -4.15885 1.82893 1.96457 2.34132 2.72538 3.16227 3.26379 3.33481 3.37801 3.73463 3.85794 3.93271 4.33957 4.38852 4.48790 4.65477 4.77518 4.88832 4.96978 5.03905 5.10908 5.17584 5.24070 5.27743 5.28839 5.38716 5.43861 5.45278 5.51954 5.66438 5.92588 5.96638 6.13017 6.17328 6.38451 6.62509 6.92798 7.33116 7.39534 7.49288 7.77851 7.85012 8.14716 8.22212 8.77370 8.92575 9.49427 10.97426 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.021594 B = 0.002877 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.344200 B = 9728.406603 C =10181.291795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.101 3.899 3 N -0.591 5.591 4 C 0.248 3.752 5 C -0.530 4.530 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.507 3.493 14 O -0.518 6.518 15 C 0.049 3.951 16 O -0.324 6.324 17 C 0.446 3.554 18 O -0.498 6.498 19 C 0.142 3.858 20 H 0.130 0.870 21 C -0.116 4.116 22 C -0.159 4.159 23 C 0.527 3.473 24 O -0.526 6.526 25 N -0.604 5.604 26 C 0.090 3.910 27 H 0.062 0.938 28 H 0.049 0.951 29 H 0.064 0.936 30 H 0.088 0.912 31 H 0.064 0.936 32 H 0.036 0.964 33 H 0.045 0.955 34 H 0.264 0.736 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.103 0.897 38 H 0.105 0.895 39 H 0.109 0.891 40 H 0.111 0.889 41 H 0.088 0.912 42 H 0.064 0.936 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.930 -2.579 18.084 18.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.023 4.023 3 N -0.325 5.325 4 C 0.129 3.871 5 C -0.568 4.568 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.199 1.199 13 C 0.291 3.709 14 O -0.394 6.394 15 C -0.028 4.028 16 O -0.238 6.238 17 C 0.286 3.714 18 O -0.385 6.385 19 C 0.035 3.965 20 H 0.148 0.852 21 C -0.154 4.154 22 C -0.199 4.199 23 C 0.315 3.685 24 O -0.402 6.402 25 N -0.338 5.338 26 C -0.051 4.051 27 H 0.081 0.919 28 H 0.068 0.932 29 H 0.083 0.917 30 H 0.106 0.894 31 H 0.082 0.918 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.122 0.878 38 H 0.124 0.876 39 H 0.127 0.873 40 H 0.129 0.871 41 H 0.106 0.894 42 H 0.083 0.917 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.828 -2.574 18.483 19.276 hybrid contribution 1.010 -0.572 -0.697 1.354 sum -3.818 -3.146 17.787 18.462 Atomic orbital electron populations 1.22232 0.96476 1.01742 1.02414 1.21517 0.93793 0.83933 1.03046 1.48219 1.63708 1.13397 1.07144 1.19341 0.96503 0.93707 0.77509 1.21417 0.96852 1.32166 1.06406 0.92401 1.24928 0.97938 0.94816 0.96335 1.69925 1.35753 1.33256 1.14320 0.86483 0.84537 0.77715 0.78612 1.20622 1.21035 1.19870 1.19675 0.79808 0.87161 0.84241 1.90720 1.44504 1.17469 1.86714 1.23015 1.02775 0.92645 0.84351 1.86559 1.78235 1.44985 1.14055 1.24145 0.74932 0.87283 0.85009 1.90691 1.41435 1.19723 1.86621 1.21215 1.03345 0.90346 0.81582 0.85205 1.22675 0.94267 0.97747 1.00708 1.22428 0.98257 0.99158 1.00090 1.20863 0.82991 0.81160 0.83466 1.90734 1.79874 1.46860 1.22753 1.47919 1.16633 1.48815 1.20479 1.21681 0.84966 0.95732 1.02718 0.91870 0.93164 0.91729 0.89363 0.91807 0.94612 0.93656 0.92625 0.88666 0.88663 0.87829 0.87604 0.87326 0.87099 0.89358 0.91741 0.91405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.14 10.24 37.16 0.38 -1.76 16 2 C 0.10 1.52 5.93 -4.04 -0.02 1.50 16 3 N -0.59 -11.86 2.46 -175.06 -0.43 -12.29 16 4 C 0.25 6.21 5.16 -5.19 -0.03 6.18 16 5 C -0.53 -14.56 9.39 -34.44 -0.32 -14.88 16 6 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -25.90 13.29 55.43 0.74 -25.16 16 9 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 13 C 0.51 10.13 7.75 -10.99 -0.09 10.05 16 14 O -0.52 -12.66 16.08 -14.11 -0.23 -12.88 16 15 C 0.05 0.74 4.50 36.00 0.16 0.91 16 16 O -0.32 -4.76 9.75 -45.88 -0.45 -5.20 16 17 C 0.45 5.52 7.13 36.00 0.26 5.78 16 18 O -0.50 -7.25 16.33 -18.75 -0.31 -7.56 16 19 C 0.14 1.26 3.61 -67.97 -0.25 1.02 16 20 H 0.13 0.90 8.14 -51.93 -0.42 0.47 16 21 C -0.12 -0.75 6.72 -24.91 -0.17 -0.91 16 22 C -0.16 -1.21 6.84 -26.74 -0.18 -1.40 16 23 C 0.53 6.00 8.03 -10.86 -0.09 5.92 16 24 O -0.53 -7.91 17.35 5.55 0.10 -7.81 16 25 N -0.60 -6.10 2.56 -173.81 -0.45 -6.55 16 26 C 0.09 0.78 11.14 59.84 0.67 1.45 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.60 7.22 -51.93 -0.38 0.22 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.09 1.37 8.07 -51.93 -0.42 0.96 16 31 H 0.06 0.80 6.44 -51.93 -0.33 0.47 16 32 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 33 H 0.05 1.28 7.42 -51.93 -0.39 0.90 16 34 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 35 H 0.10 1.31 7.39 -51.93 -0.38 0.93 16 36 H 0.10 1.24 7.18 -51.93 -0.37 0.86 16 37 H 0.10 0.64 7.90 -51.93 -0.41 0.23 16 38 H 0.11 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.09 0.81 7.53 -51.92 -0.39 0.41 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 369.05 15.07 5.56 5.56 Total: -1.00 -36.39 369.05 -6.67 -43.07 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: -6.42 Total: -2.99 kcal Atomic # 6 Polarization: 15.26 SS G_CDS: 0.23 Total: 15.48 kcal Atomic # 7 Polarization: -43.86 SS G_CDS: -0.14 Total: -44.00 kcal Atomic # 8 Polarization: -32.57 SS G_CDS: -0.88 Total: -33.46 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.39 -6.67 -43.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786179707.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.918 kcal (2) G-P(sol) polarization free energy of solvation -36.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds