Wall clock time and date at job start Fri Apr 10 2020 18:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46502 * 109.47143 * 2 1 4 4 C 1.46494 * 120.00241 * 270.00311 * 3 2 1 5 5 C 1.50707 * 109.47196 * 269.99893 * 4 3 2 6 6 H 1.07996 * 119.99484 * 0.02562 * 5 4 3 7 7 C 1.37871 * 119.99991 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00304 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99837 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47236 * 90.00165 * 9 7 5 11 11 H 1.48493 * 109.47172 * 210.00182 * 9 7 5 12 12 H 1.48495 * 109.47165 * 330.00254 * 9 7 5 13 13 C 1.34781 * 119.99572 * 89.99930 * 3 2 1 14 14 O 1.21283 * 119.99830 * 179.97438 * 13 3 2 15 15 C 1.50695 * 120.00102 * 0.02562 * 13 3 2 16 16 O 1.45208 * 109.47103 * 179.97438 * 15 13 3 17 17 C 1.34223 * 117.00133 * 180.02562 * 16 15 13 18 18 O 1.20830 * 120.00020 * 359.97438 * 17 16 15 19 19 C 1.50697 * 120.00031 * 180.02562 * 17 16 15 20 20 H 1.09001 * 110.21589 * 320.46895 * 19 17 16 21 21 C 1.54831 * 110.33243 * 82.41989 * 19 17 16 22 22 C 1.54631 * 101.60220 * 93.62136 * 21 19 17 23 23 C 1.51281 * 104.31067 * 24.82962 * 22 21 19 24 24 O 1.21288 * 124.93742 * 163.64367 * 23 22 21 25 25 N 1.34418 * 110.11952 * 343.67722 * 23 22 21 26 26 C 1.46493 * 124.35106 * 179.57371 * 25 23 22 27 27 H 1.08994 * 109.46927 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46859 * 299.99992 * 1 2 3 29 29 H 1.08997 * 109.46849 * 59.99796 * 1 2 3 30 30 H 1.09004 * 109.46859 * 240.00008 * 2 1 3 31 31 H 1.08996 * 109.47245 * 120.00571 * 2 1 3 32 32 H 1.09004 * 109.46985 * 29.99562 * 4 3 2 33 33 H 1.09000 * 109.47408 * 149.99771 * 4 3 2 34 34 H 0.97000 * 120.00031 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.47380 * 60.00290 * 15 13 3 36 36 H 1.08990 * 109.47211 * 299.99749 * 15 13 3 37 37 H 1.08999 * 111.07622 * 335.54679 * 21 19 17 38 38 H 1.08994 * 111.01534 * 211.67491 * 21 19 17 39 39 H 1.09002 * 110.48855 * 266.08223 * 22 21 19 40 40 H 1.08998 * 110.48570 * 143.57284 * 22 21 19 41 41 H 1.09008 * 109.47170 * 359.97438 * 26 25 23 42 42 H 1.09005 * 109.47305 * 119.97497 * 26 25 23 43 43 H 1.08996 * 109.47274 * 239.97747 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 -1.2686 5 6 3.6858 1.8351 -1.7038 6 1 4.3426 1.2303 -1.0962 7 6 4.1491 2.3898 -2.8779 8 7 3.3491 3.1259 -3.6180 9 14 5.9135 2.0969 -3.4169 10 1 5.9776 0.8755 -4.2592 11 1 6.3920 3.2641 -4.2002 12 1 6.7736 1.9181 -2.2196 13 6 2.2430 2.0165 1.1673 14 8 2.6477 3.1598 1.1673 15 6 1.9923 1.3059 2.4723 16 8 2.3073 2.1953 3.5760 17 6 2.1373 1.7112 4.8163 18 8 1.7380 0.5818 4.9746 19 6 2.4432 2.5767 6.0115 20 1 3.3416 3.1666 5.8293 21 6 1.2457 3.5076 6.3223 22 6 0.4705 2.6773 7.3714 23 6 1.5205 1.7798 7.9882 24 8 1.3931 1.1785 9.0338 25 7 2.6155 1.7461 7.2092 26 6 3.8253 0.9794 7.5165 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.5817 1.6877 -2.0283 33 1 2.0955 3.1411 -1.1383 34 1 3.6751 3.5164 -4.4439 35 1 2.6229 0.4186 2.5299 36 1 0.9446 1.0114 2.5302 37 1 0.6391 3.6762 5.4325 38 1 1.5851 4.4527 6.7460 39 1 -0.3050 2.0819 6.8894 40 1 0.0343 3.3298 8.1277 41 1 3.6917 0.4531 8.4617 42 1 4.0095 0.2570 6.7213 43 1 4.6750 1.6576 7.5953 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000786179707.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:12 Heat of formation + Delta-G solvation = -166.531351 kcal Electronic energy + Delta-G solvation = -26298.445862 eV Core-core repulsion = 22343.504406 eV Total energy + Delta-G solvation = -3954.941456 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.36244 -41.15606 -40.37061 -37.97106 -37.25180 -36.94414 -34.93253 -33.87694 -31.77312 -30.97748 -29.57159 -28.17978 -27.71678 -25.01302 -24.35538 -23.85707 -22.26062 -20.64464 -20.21559 -19.33131 -18.63713 -18.27557 -18.01078 -17.64669 -17.54031 -17.14499 -16.53185 -16.37344 -16.11835 -15.67376 -14.98742 -14.84073 -14.79891 -14.64228 -14.48150 -14.09010 -13.94388 -13.69364 -13.61623 -13.54642 -13.27628 -13.26560 -13.07038 -12.68626 -12.53449 -12.50126 -12.41466 -12.23116 -12.06689 -11.80713 -11.71482 -11.68779 -11.06441 -10.73281 -10.63607 -10.04800 -9.53780 -8.22645 -6.37043 0.87709 0.99833 1.38074 1.40658 1.48889 1.51250 1.62822 1.89309 2.32706 2.45082 3.07689 3.16966 3.32891 3.41284 3.50043 3.80343 3.90897 3.96150 4.08352 4.14685 4.26788 4.34070 4.37566 4.54443 4.58271 4.76577 4.77538 4.87138 4.90143 4.94583 4.97568 5.03385 5.15931 5.22310 5.24484 5.35881 5.54587 5.79981 5.85172 6.04805 6.46201 6.63257 6.72507 6.95084 7.21974 7.37388 8.84697 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.021594 B = 0.002877 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.344200 B = 9728.406603 C =10181.291795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.094 3.906 3 N -0.595 5.595 4 C 0.263 3.737 5 C -0.545 4.545 6 H 0.054 0.946 7 C 0.010 3.990 8 N -0.927 5.927 9 Si 0.967 3.033 10 H -0.265 1.265 11 H -0.281 1.281 12 H -0.272 1.272 13 C 0.500 3.500 14 O -0.573 6.573 15 C 0.062 3.938 16 O -0.338 6.338 17 C 0.451 3.549 18 O -0.522 6.522 19 C 0.141 3.859 20 H 0.156 0.844 21 C -0.107 4.107 22 C -0.154 4.154 23 C 0.515 3.485 24 O -0.573 6.573 25 N -0.605 5.605 26 C 0.085 3.915 27 H 0.095 0.905 28 H 0.058 0.942 29 H 0.044 0.956 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.028 0.972 33 H 0.002 0.998 34 H 0.268 0.732 35 H 0.113 0.887 36 H 0.122 0.878 37 H 0.109 0.891 38 H 0.137 0.863 39 H 0.108 0.892 40 H 0.133 0.867 41 H 0.077 0.923 42 H 0.059 0.941 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.598 -3.142 18.956 19.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.028 4.028 3 N -0.328 5.328 4 C 0.142 3.858 5 C -0.584 4.584 6 H 0.073 0.927 7 C -0.189 4.189 8 N -0.567 5.567 9 Si 0.791 3.209 10 H -0.190 1.190 11 H -0.207 1.207 12 H -0.197 1.197 13 C 0.287 3.713 14 O -0.453 6.453 15 C -0.015 4.015 16 O -0.253 6.253 17 C 0.292 3.708 18 O -0.410 6.410 19 C 0.034 3.966 20 H 0.173 0.827 21 C -0.144 4.144 22 C -0.194 4.194 23 C 0.306 3.694 24 O -0.452 6.452 25 N -0.338 5.338 26 C -0.056 4.056 27 H 0.114 0.886 28 H 0.077 0.923 29 H 0.064 0.936 30 H 0.099 0.901 31 H 0.114 0.886 32 H 0.046 0.954 33 H 0.020 0.980 34 H 0.076 0.924 35 H 0.131 0.869 36 H 0.139 0.861 37 H 0.127 0.873 38 H 0.155 0.845 39 H 0.126 0.874 40 H 0.151 0.849 41 H 0.096 0.904 42 H 0.077 0.923 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.510 -3.179 19.349 20.121 hybrid contribution 0.887 -0.424 -0.957 1.372 sum -3.623 -3.602 18.393 19.089 Atomic orbital electron populations 1.22173 0.94307 1.03707 1.01933 1.21846 0.95562 0.81102 1.04276 1.48203 1.63628 1.15168 1.05787 1.18785 0.95473 0.91765 0.79746 1.21706 0.97882 1.32162 1.06627 0.92749 1.25820 1.02280 0.94431 0.96415 1.70040 1.37754 1.34075 1.14787 0.85430 0.79119 0.78130 0.78222 1.18989 1.20681 1.19714 1.20499 0.78386 0.86679 0.85721 1.90684 1.46939 1.19982 1.87696 1.22815 1.04651 0.91991 0.82005 1.86569 1.78626 1.45336 1.14742 1.24847 0.73822 0.87335 0.84758 1.90684 1.42675 1.20938 1.86674 1.21553 1.05655 0.89864 0.79486 0.82653 1.22804 0.92941 0.98094 1.00581 1.22478 0.97243 0.98911 1.00752 1.21546 0.83890 0.81019 0.82990 1.90702 1.80806 1.48880 1.24822 1.48113 1.16658 1.48620 1.20455 1.21791 0.85551 0.96291 1.01964 0.88610 0.92254 0.93635 0.90146 0.88554 0.95384 0.97974 0.92357 0.86880 0.86060 0.87287 0.84506 0.87403 0.84927 0.90372 0.92274 0.88736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.76 10.24 71.98 0.74 -3.03 16 2 C 0.09 2.69 5.93 86.38 0.51 3.20 16 3 N -0.60 -23.98 2.46 -826.14 -2.03 -26.00 16 4 C 0.26 13.66 5.16 85.64 0.44 14.10 16 5 C -0.55 -30.52 9.39 25.60 0.24 -30.28 16 6 H 0.05 3.01 7.81 -2.91 -0.02 2.98 16 7 C 0.01 0.55 5.46 84.65 0.46 1.01 16 8 N -0.93 -54.77 13.29 21.45 0.28 -54.49 16 9 Si 0.97 43.83 29.54 68.60 2.03 45.86 16 10 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 11 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 12 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 13 C 0.50 19.94 7.75 87.65 0.68 20.62 16 14 O -0.57 -28.72 16.08 15.76 0.25 -28.46 16 15 C 0.06 1.75 4.50 71.23 0.32 2.07 16 16 O -0.34 -9.31 9.75 -44.99 -0.44 -9.75 16 17 C 0.45 10.20 7.13 71.23 0.51 10.70 16 18 O -0.52 -14.20 16.33 21.95 0.36 -13.84 16 19 C 0.14 2.14 3.61 44.82 0.16 2.30 16 20 H 0.16 1.63 8.14 -2.39 -0.02 1.61 16 21 C -0.11 -1.03 6.72 31.77 0.21 -0.81 16 22 C -0.15 -1.99 6.84 30.59 0.21 -1.78 16 23 C 0.52 11.16 8.03 87.90 0.71 11.86 16 24 O -0.57 -17.23 17.35 -3.05 -0.05 -17.28 16 25 N -0.61 -11.21 2.56 -822.39 -2.11 -13.32 16 26 C 0.09 1.38 11.14 127.77 1.42 2.80 16 27 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.06 1.26 7.22 -2.39 -0.02 1.25 16 29 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.08 2.43 8.07 -2.39 -0.02 2.41 16 31 H 0.10 2.14 6.44 -2.39 -0.02 2.12 16 32 H 0.03 1.48 8.07 -2.39 -0.02 1.46 16 33 H 0.00 0.13 7.42 -2.39 -0.02 0.11 16 34 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 35 H 0.11 2.80 7.39 -2.39 -0.02 2.78 16 36 H 0.12 2.79 7.18 -2.39 -0.02 2.77 16 37 H 0.11 1.01 7.90 -2.39 -0.02 0.99 16 38 H 0.14 0.53 8.14 -2.39 -0.02 0.51 16 39 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.13 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.08 1.42 7.53 -2.38 -0.02 1.40 16 42 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 43 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -82.57 369.05 5.92 -76.65 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: 1.01 Total: 7.87 kcal Atomic # 6 Polarization: 26.15 SS G_CDS: 6.61 Total: 32.77 kcal Atomic # 7 Polarization: -89.96 SS G_CDS: -3.85 Total: -93.81 kcal Atomic # 8 Polarization: -69.45 SS G_CDS: 0.12 Total: -69.33 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -82.57 5.92 -76.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786179707.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.880 kcal (2) G-P(sol) polarization free energy of solvation -82.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds