Wall clock time and date at job start Fri Apr 10 2020 18:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21283 * 120.00298 * 2 1 4 4 N 1.34777 * 120.00259 * 179.97438 * 2 1 3 5 5 C 1.47066 * 136.05348 * 359.63615 * 4 2 1 6 6 C 1.53756 * 87.89024 * 152.95786 * 5 4 2 7 7 C 1.50705 * 114.26711 * 139.78829 * 6 5 4 8 8 O 1.20824 * 119.99851 * 266.48024 * 7 6 5 9 9 O 1.34229 * 119.99583 * 86.48096 * 7 6 5 10 10 C 1.45207 * 116.99433 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.47105 * 29.99617 * 10 9 7 12 12 C 1.53003 * 109.46620 * 269.99684 * 10 9 7 13 13 C 1.50700 * 109.46914 * 149.99705 * 10 9 7 14 14 O 1.21276 * 120.00051 * 16.02651 * 13 10 9 15 15 N 1.34772 * 119.99812 * 196.01983 * 13 10 9 16 16 C 1.46496 * 119.99997 * 5.37086 * 15 13 10 17 17 C 1.46501 * 119.99822 * 185.36159 * 15 13 10 18 18 C 1.50702 * 109.46813 * 90.00778 * 17 15 13 19 19 H 1.08004 * 120.00027 * 359.97438 * 18 17 15 20 20 C 1.37874 * 120.00102 * 179.97438 * 18 17 15 21 21 N 1.31519 * 120.00088 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 119.99939 * 359.97438 * 20 18 17 23 23 H 1.48504 * 109.47164 * 90.00041 * 22 20 18 24 24 H 1.48505 * 109.46964 * 209.99827 * 22 20 18 25 25 H 1.48500 * 109.46980 * 329.99928 * 22 20 18 26 26 C 1.47064 * 136.06323 * 180.02562 * 4 2 1 27 27 H 1.09003 * 109.47163 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.47010 * 240.00325 * 1 2 3 29 29 H 1.08996 * 109.47003 * 119.99743 * 1 2 3 30 30 H 1.09003 * 113.46719 * 267.69035 * 5 4 2 31 31 H 1.08999 * 113.47335 * 38.12844 * 5 4 2 32 32 H 1.08992 * 114.39706 * 272.67994 * 6 5 4 33 33 H 1.09005 * 109.46706 * 186.14149 * 12 10 9 34 34 H 1.08997 * 109.47130 * 306.13941 * 12 10 9 35 35 H 1.08998 * 109.47014 * 66.14322 * 12 10 9 36 36 H 1.08998 * 109.47458 * 84.82231 * 16 15 13 37 37 H 1.09005 * 109.47031 * 204.81973 * 16 15 13 38 38 H 1.09001 * 109.47413 * 324.81618 * 16 15 13 39 39 H 1.09003 * 109.47236 * 209.99977 * 17 15 13 40 40 H 1.08993 * 109.47388 * 330.00567 * 17 15 13 41 41 H 0.96999 * 119.99814 * 179.97438 * 21 20 18 42 42 H 1.09007 * 113.46289 * 321.86409 * 26 4 2 43 43 H 1.09002 * 113.46910 * 92.30146 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.8265 -2.5945 0.0076 6 6 3.1645 -2.8719 -0.6973 7 6 3.8799 -4.1039 -0.2057 8 8 4.7110 -4.0122 0.6665 9 8 3.5936 -5.3029 -0.7368 10 6 4.3211 -6.4458 -0.2144 11 1 4.5784 -6.2665 0.8296 12 6 5.6011 -6.6505 -1.0272 13 6 3.4596 -7.6782 -0.3149 14 8 2.4793 -7.6762 -1.0288 15 7 3.7788 -8.7827 0.3884 16 6 4.8927 -8.7491 1.3393 17 6 3.0117 -10.0168 0.2021 18 6 3.6410 -10.8389 -0.8930 19 1 4.5238 -10.4780 -1.3998 20 6 3.0898 -12.0518 -1.2479 21 7 3.6387 -12.7691 -2.2039 22 14 1.5633 -12.6765 -0.3709 23 1 0.3519 -12.1985 -1.0846 24 1 1.5746 -14.1614 -0.3545 25 1 1.5500 -12.1661 1.0236 26 6 3.5941 -1.5740 0.0012 27 1 -0.3634 1.0277 0.0005 28 1 -0.3633 -0.5138 0.8900 29 1 -0.3633 -0.5138 -0.8900 30 1 1.7665 -3.0219 1.0086 31 1 0.9552 -2.8286 -0.6040 32 1 3.1236 -2.8023 -1.7842 33 1 6.0915 -7.5700 -0.7074 34 1 5.3518 -6.7210 -2.0860 35 1 6.2719 -5.8064 -0.8673 36 1 4.5416 -8.3645 2.2968 37 1 5.2855 -9.7568 1.4746 38 1 5.6799 -8.1010 0.9541 39 1 3.0112 -10.5880 1.1305 40 1 1.9864 -9.7694 -0.0728 41 1 3.2511 -13.6226 -2.4533 42 1 4.2291 -0.9384 -0.6162 43 1 3.9998 -1.7325 1.0004 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000788157540.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:22 Heat of formation + Delta-G solvation = -103.093579 kcal Electronic energy + Delta-G solvation = -25978.969365 eV Core-core repulsion = 22026.778777 eV Total energy + Delta-G solvation = -3952.190588 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.50175 -40.26640 -39.11528 -38.05916 -36.50224 -35.08139 -32.84814 -31.97394 -31.46507 -29.27410 -28.45046 -26.48794 -26.27188 -25.26830 -23.94043 -22.12043 -20.63166 -19.46649 -18.92890 -18.35476 -17.40135 -17.07163 -17.03034 -16.37819 -16.34518 -15.95405 -15.59771 -15.11179 -14.80862 -14.38199 -14.03597 -13.79327 -13.45628 -13.32478 -13.18644 -13.07650 -12.83638 -12.75424 -12.45366 -12.40065 -12.34228 -12.29075 -11.99656 -11.57077 -11.55154 -11.35414 -11.02536 -10.86398 -10.79284 -10.57694 -10.26972 -10.22405 -9.62345 -9.25554 -9.11081 -8.65873 -7.86581 -6.15777 -4.15712 1.83515 2.04026 2.17782 2.55862 3.06188 3.24449 3.30415 3.32319 3.62182 3.69340 3.97373 4.31291 4.33297 4.49528 4.59528 4.69185 4.77937 4.89695 4.93036 4.95582 4.98253 4.99142 5.15933 5.17553 5.19312 5.41267 5.45795 5.54092 5.60144 5.64406 5.71546 5.98842 6.16000 6.24064 6.57902 6.83583 7.15992 7.19705 7.47412 7.51728 7.69852 8.02772 8.37361 8.72645 8.86821 9.43649 10.97288 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.024043 B = 0.002660 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.288556 B =10524.257238 C =11156.885366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.544 3.456 3 O -0.543 6.543 4 N -0.651 5.651 5 C 0.120 3.880 6 C -0.125 4.125 7 C 0.476 3.524 8 O -0.503 6.503 9 O -0.320 6.320 10 C 0.071 3.929 11 H 0.104 0.896 12 C -0.166 4.166 13 C 0.513 3.487 14 O -0.520 6.520 15 N -0.591 5.591 16 C 0.073 3.927 17 C 0.216 3.784 18 C -0.533 4.533 19 H 0.075 0.925 20 C 0.073 3.927 21 N -0.895 5.895 22 Si 0.876 3.124 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.266 1.266 26 C 0.123 3.877 27 H 0.094 0.906 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.143 0.857 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.049 0.951 37 H 0.083 0.917 38 H 0.063 0.937 39 H 0.034 0.966 40 H 0.039 0.961 41 H 0.266 0.734 42 H 0.091 0.909 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.663 19.585 6.697 20.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.336 3.664 3 O -0.420 6.420 4 N -0.388 5.388 5 C -0.004 4.004 6 C -0.145 4.145 7 C 0.317 3.683 8 O -0.391 6.391 9 O -0.235 6.235 10 C 0.013 3.987 11 H 0.122 0.878 12 C -0.223 4.223 13 C 0.297 3.703 14 O -0.395 6.395 15 N -0.325 5.325 16 C -0.071 4.071 17 C 0.096 3.904 18 C -0.572 4.572 19 H 0.094 0.906 20 C -0.129 4.129 21 N -0.533 5.533 22 Si 0.703 3.297 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.190 1.190 26 C 0.000 4.000 27 H 0.113 0.887 28 H 0.108 0.892 29 H 0.109 0.891 30 H 0.114 0.886 31 H 0.118 0.882 32 H 0.161 0.839 33 H 0.107 0.893 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.067 0.933 37 H 0.102 0.898 38 H 0.081 0.919 39 H 0.052 0.948 40 H 0.057 0.943 41 H 0.075 0.925 42 H 0.109 0.891 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.781 20.180 6.479 21.269 hybrid contribution -0.504 -0.744 0.440 1.000 sum -2.285 19.436 6.919 20.757 Atomic orbital electron populations 1.21879 0.90613 1.05634 1.04612 1.20436 0.90217 0.80939 0.74853 1.90750 1.70884 1.30154 1.50165 1.49576 1.09401 1.05596 1.74210 1.22963 0.96782 0.79294 1.01312 1.22880 0.97658 0.90180 1.03782 1.23089 0.80672 0.84982 0.79542 1.90673 1.32110 1.86517 1.29797 1.86638 1.61511 1.15104 1.60266 1.22691 0.92175 0.83445 1.00382 0.87789 1.22176 0.94713 1.03662 1.01773 1.19756 0.85648 0.83715 0.81167 1.90695 1.27333 1.82951 1.38527 1.47747 1.33056 1.11645 1.40023 1.21871 0.89351 1.03953 0.91922 1.19747 0.92661 0.80566 0.97443 1.21305 1.14178 1.03223 1.18474 0.90648 1.24853 0.96946 0.96401 0.94734 1.69892 1.40623 1.13471 1.29331 0.86848 0.84014 0.78179 0.80638 1.19823 1.21010 1.19035 1.22905 0.84519 0.90645 1.01895 0.88671 0.89240 0.89080 0.88626 0.88236 0.83925 0.89280 0.90417 0.91120 0.93257 0.89835 0.91888 0.94828 0.94259 0.92457 0.89093 0.87946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.95 10.15 36.00 0.37 -0.59 16 2 C 0.54 5.38 8.19 -10.99 -0.09 5.29 16 3 O -0.54 -7.74 17.86 5.55 0.10 -7.64 16 4 N -0.65 -5.58 3.69 -185.06 -0.68 -6.26 16 5 C 0.12 0.81 8.00 -8.38 -0.07 0.75 16 6 C -0.13 -1.00 4.62 -91.11 -0.42 -1.42 16 7 C 0.48 5.44 7.50 36.01 0.27 5.71 16 8 O -0.50 -6.53 15.17 -18.75 -0.28 -6.81 16 9 O -0.32 -4.58 9.47 -45.75 -0.43 -5.01 16 10 C 0.07 1.07 2.14 -27.88 -0.06 1.01 16 11 H 0.10 1.38 6.31 -51.93 -0.33 1.06 16 12 C -0.17 -2.20 9.19 37.16 0.34 -1.86 16 13 C 0.51 10.08 6.95 -10.99 -0.08 10.00 16 14 O -0.52 -12.38 16.13 -13.54 -0.22 -12.60 16 15 N -0.59 -11.56 2.86 -182.96 -0.52 -12.08 16 16 C 0.07 1.04 9.79 59.84 0.59 1.62 16 17 C 0.22 5.05 4.25 -5.19 -0.02 5.03 16 18 C -0.53 -14.72 9.94 -34.44 -0.34 -15.06 16 19 H 0.08 2.27 8.06 -52.48 -0.42 1.85 16 20 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 21 N -0.90 -26.83 13.96 55.43 0.77 -26.06 16 22 Si 0.88 20.86 27.47 -169.99 -4.67 16.19 16 23 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.27 -5.92 6.54 56.52 0.37 -5.55 16 26 C 0.12 1.03 7.96 -8.51 -0.07 0.97 16 27 H 0.09 0.52 8.12 -51.93 -0.42 0.10 16 28 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.10 0.61 8.10 -51.93 -0.42 0.19 16 31 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.14 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.09 1.16 6.33 -51.93 -0.33 0.83 16 34 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.08 1.21 8.03 -51.93 -0.42 0.80 16 38 H 0.06 0.76 4.92 -51.93 -0.26 0.50 16 39 H 0.03 0.74 7.13 -51.93 -0.37 0.37 16 40 H 0.04 0.98 6.78 -51.93 -0.35 0.63 16 41 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 42 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.10 0.90 7.46 -51.93 -0.39 0.51 16 LS Contribution 366.18 15.07 5.52 5.52 Total: -1.00 -36.96 366.18 -6.35 -43.31 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: -6.25 Total: -1.97 kcal Atomic # 6 Polarization: 13.10 SS G_CDS: 0.32 Total: 13.42 kcal Atomic # 7 Polarization: -43.97 SS G_CDS: -0.43 Total: -44.41 kcal Atomic # 8 Polarization: -31.23 SS G_CDS: -0.84 Total: -32.06 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.67 Total: 16.19 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -36.96 -6.35 -43.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788157540.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.783 kcal (2) G-P(sol) polarization free energy of solvation -36.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds