Wall clock time and date at job start Fri Apr 10 2020 18:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21283 * 120.00298 * 2 1 4 4 N 1.34777 * 120.00259 * 179.97438 * 2 1 3 5 5 C 1.47066 * 136.05348 * 359.63615 * 4 2 1 6 6 C 1.53756 * 87.89024 * 152.95786 * 5 4 2 7 7 C 1.50705 * 114.26711 * 139.78829 * 6 5 4 8 8 O 1.20824 * 119.99851 * 266.48024 * 7 6 5 9 9 O 1.34229 * 119.99583 * 86.48096 * 7 6 5 10 10 C 1.45207 * 116.99433 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.47105 * 29.99617 * 10 9 7 12 12 C 1.53003 * 109.46620 * 269.99684 * 10 9 7 13 13 C 1.50700 * 109.46914 * 149.99705 * 10 9 7 14 14 O 1.21276 * 120.00051 * 16.02651 * 13 10 9 15 15 N 1.34772 * 119.99812 * 196.01983 * 13 10 9 16 16 C 1.46496 * 119.99997 * 5.37086 * 15 13 10 17 17 C 1.46501 * 119.99822 * 185.36159 * 15 13 10 18 18 C 1.50702 * 109.46813 * 90.00778 * 17 15 13 19 19 H 1.08004 * 120.00027 * 359.97438 * 18 17 15 20 20 C 1.37874 * 120.00102 * 179.97438 * 18 17 15 21 21 N 1.31519 * 120.00088 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 119.99939 * 359.97438 * 20 18 17 23 23 H 1.48504 * 109.47164 * 90.00041 * 22 20 18 24 24 H 1.48505 * 109.46964 * 209.99827 * 22 20 18 25 25 H 1.48500 * 109.46980 * 329.99928 * 22 20 18 26 26 C 1.47064 * 136.06323 * 180.02562 * 4 2 1 27 27 H 1.09003 * 109.47163 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.47010 * 240.00325 * 1 2 3 29 29 H 1.08996 * 109.47003 * 119.99743 * 1 2 3 30 30 H 1.09003 * 113.46719 * 267.69035 * 5 4 2 31 31 H 1.08999 * 113.47335 * 38.12844 * 5 4 2 32 32 H 1.08992 * 114.39706 * 272.67994 * 6 5 4 33 33 H 1.09005 * 109.46706 * 186.14149 * 12 10 9 34 34 H 1.08997 * 109.47130 * 306.13941 * 12 10 9 35 35 H 1.08998 * 109.47014 * 66.14322 * 12 10 9 36 36 H 1.08998 * 109.47458 * 84.82231 * 16 15 13 37 37 H 1.09005 * 109.47031 * 204.81973 * 16 15 13 38 38 H 1.09001 * 109.47413 * 324.81618 * 16 15 13 39 39 H 1.09003 * 109.47236 * 209.99977 * 17 15 13 40 40 H 1.08993 * 109.47388 * 330.00567 * 17 15 13 41 41 H 0.96999 * 119.99814 * 179.97438 * 21 20 18 42 42 H 1.09007 * 113.46289 * 321.86409 * 26 4 2 43 43 H 1.09002 * 113.46910 * 92.30146 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.8265 -2.5945 0.0076 6 6 3.1645 -2.8719 -0.6973 7 6 3.8799 -4.1039 -0.2057 8 8 4.7110 -4.0122 0.6665 9 8 3.5936 -5.3029 -0.7368 10 6 4.3211 -6.4458 -0.2144 11 1 4.5784 -6.2665 0.8296 12 6 5.6011 -6.6505 -1.0272 13 6 3.4596 -7.6782 -0.3149 14 8 2.4793 -7.6762 -1.0288 15 7 3.7788 -8.7827 0.3884 16 6 4.8927 -8.7491 1.3393 17 6 3.0117 -10.0168 0.2021 18 6 3.6410 -10.8389 -0.8930 19 1 4.5238 -10.4780 -1.3998 20 6 3.0898 -12.0518 -1.2479 21 7 3.6387 -12.7691 -2.2039 22 14 1.5633 -12.6765 -0.3709 23 1 0.3519 -12.1985 -1.0846 24 1 1.5746 -14.1614 -0.3545 25 1 1.5500 -12.1661 1.0236 26 6 3.5941 -1.5740 0.0012 27 1 -0.3634 1.0277 0.0005 28 1 -0.3633 -0.5138 0.8900 29 1 -0.3633 -0.5138 -0.8900 30 1 1.7665 -3.0219 1.0086 31 1 0.9552 -2.8286 -0.6040 32 1 3.1236 -2.8023 -1.7842 33 1 6.0915 -7.5700 -0.7074 34 1 5.3518 -6.7210 -2.0860 35 1 6.2719 -5.8064 -0.8673 36 1 4.5416 -8.3645 2.2968 37 1 5.2855 -9.7568 1.4746 38 1 5.6799 -8.1010 0.9541 39 1 3.0112 -10.5880 1.1305 40 1 1.9864 -9.7694 -0.0728 41 1 3.2511 -13.6226 -2.4533 42 1 4.2291 -0.9384 -0.6162 43 1 3.9998 -1.7325 1.0004 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000788157540.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:22 Heat of formation + Delta-G solvation = -128.890711 kcal Electronic energy + Delta-G solvation = -25980.088013 eV Core-core repulsion = 22026.778777 eV Total energy + Delta-G solvation = -3953.309236 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.36392 -41.27992 -40.40416 -38.92877 -37.55859 -36.70182 -34.79691 -33.24556 -32.25858 -30.30542 -29.80592 -27.60535 -27.08875 -26.30750 -25.28572 -23.63241 -21.58481 -20.37477 -20.10826 -19.29211 -19.11989 -18.28571 -18.03151 -17.64184 -17.31511 -16.97364 -16.72833 -16.30735 -16.23531 -15.77076 -15.19473 -14.76887 -14.65113 -14.32616 -14.30272 -14.11699 -13.77331 -13.72924 -13.58584 -13.53987 -13.33523 -13.30033 -13.19824 -13.00611 -12.83743 -12.61039 -12.43614 -12.02622 -12.01050 -11.93984 -11.73181 -11.70668 -11.07264 -10.81652 -10.66555 -9.96154 -9.48268 -8.32423 -6.38067 0.93918 1.11311 1.36088 1.39579 1.47416 1.47682 1.55974 1.77694 2.32740 2.37604 2.95810 3.02084 3.37167 3.38377 3.52891 3.74476 3.80470 3.83016 4.00821 4.25522 4.28700 4.39804 4.43236 4.53698 4.54307 4.57690 4.61580 4.63187 4.68330 4.78665 4.87825 4.89652 4.93674 5.07021 5.09515 5.26296 5.44746 5.53540 6.22563 6.46532 6.53286 6.59039 6.63899 6.97909 7.15707 7.29707 8.84021 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.024043 B = 0.002660 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.288556 B =10524.257238 C =11156.885366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.537 3.463 3 O -0.597 6.597 4 N -0.651 5.651 5 C 0.124 3.876 6 C -0.117 4.117 7 C 0.480 3.520 8 O -0.517 6.517 9 O -0.336 6.336 10 C 0.081 3.919 11 H 0.127 0.873 12 C -0.162 4.162 13 C 0.504 3.496 14 O -0.572 6.572 15 N -0.598 5.598 16 C 0.065 3.935 17 C 0.222 3.778 18 C -0.538 4.538 19 H 0.033 0.967 20 C 0.012 3.988 21 N -0.944 5.944 22 Si 0.946 3.054 23 H -0.276 1.276 24 H -0.278 1.278 25 H -0.236 1.236 26 C 0.118 3.882 27 H 0.094 0.906 28 H 0.108 0.892 29 H 0.112 0.888 30 H 0.103 0.897 31 H 0.124 0.876 32 H 0.160 0.840 33 H 0.090 0.910 34 H 0.061 0.939 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.056 0.944 40 H 0.023 0.977 41 H 0.268 0.732 42 H 0.090 0.910 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.652 20.205 8.547 22.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.330 3.670 3 O -0.478 6.478 4 N -0.386 5.386 5 C 0.002 3.998 6 C -0.137 4.137 7 C 0.323 3.677 8 O -0.406 6.406 9 O -0.251 6.251 10 C 0.023 3.977 11 H 0.145 0.855 12 C -0.219 4.219 13 C 0.291 3.709 14 O -0.451 6.451 15 N -0.330 5.330 16 C -0.077 4.077 17 C 0.100 3.900 18 C -0.576 4.576 19 H 0.052 0.948 20 C -0.186 4.186 21 N -0.584 5.584 22 Si 0.769 3.231 23 H -0.202 1.202 24 H -0.203 1.203 25 H -0.159 1.159 26 C -0.005 4.005 27 H 0.113 0.887 28 H 0.127 0.873 29 H 0.130 0.870 30 H 0.121 0.879 31 H 0.142 0.858 32 H 0.178 0.822 33 H 0.109 0.891 34 H 0.080 0.920 35 H 0.114 0.886 36 H 0.101 0.899 37 H 0.098 0.902 38 H 0.105 0.895 39 H 0.074 0.926 40 H 0.041 0.959 41 H 0.077 0.923 42 H 0.109 0.891 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.733 20.796 8.375 22.585 hybrid contribution -0.090 -0.902 -0.171 0.922 sum -2.823 19.894 8.204 21.704 Atomic orbital electron populations 1.21909 0.87255 1.06298 1.06463 1.21235 0.91790 0.80304 0.73651 1.90723 1.72207 1.32043 1.52821 1.49636 1.09519 1.06201 1.73246 1.23113 0.96867 0.77786 1.02035 1.22939 0.98035 0.87985 1.04723 1.23618 0.80424 0.84690 0.78975 1.90666 1.32883 1.86519 1.30498 1.86654 1.61901 1.15738 1.60845 1.22525 0.91245 0.81919 1.01979 0.85525 1.22170 0.94351 1.04857 1.00513 1.20597 0.85395 0.85005 0.79924 1.90655 1.29719 1.84137 1.40618 1.47826 1.33915 1.10458 1.40813 1.22194 0.88513 1.04662 0.92324 1.19445 0.91956 0.81895 0.96658 1.21543 1.12952 1.03823 1.19291 0.94831 1.25828 1.00530 0.96699 0.95561 1.70044 1.42736 1.14203 1.31389 0.85745 0.78923 0.77743 0.80734 1.20151 1.20291 1.15899 1.22936 0.84879 0.90885 1.01792 0.88730 0.87309 0.86992 0.87921 0.85810 0.82226 0.89134 0.92012 0.88556 0.89886 0.90243 0.89550 0.92569 0.95879 0.92277 0.89144 0.88365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 10.15 71.23 0.72 -0.72 16 2 C 0.54 9.98 8.19 87.66 0.72 10.70 16 3 O -0.60 -17.11 17.86 -3.04 -0.05 -17.16 16 4 N -0.65 -10.01 3.69 -857.80 -3.16 -13.17 16 5 C 0.12 1.35 8.00 83.26 0.67 2.02 16 6 C -0.12 -1.63 4.62 -11.11 -0.05 -1.68 16 7 C 0.48 10.00 7.50 71.24 0.53 10.53 16 8 O -0.52 -12.27 15.17 21.97 0.33 -11.94 16 9 O -0.34 -9.08 9.47 -45.20 -0.43 -9.51 16 10 C 0.08 2.31 2.14 29.85 0.06 2.37 16 11 H 0.13 3.00 6.31 -2.39 -0.02 2.98 16 12 C -0.16 -4.06 9.19 71.98 0.66 -3.40 16 13 C 0.50 19.55 6.95 87.66 0.61 20.16 16 14 O -0.57 -27.61 16.13 15.24 0.25 -27.36 16 15 N -0.60 -22.76 2.86 -851.15 -2.43 -25.19 16 16 C 0.06 1.69 9.79 127.77 1.25 2.94 16 17 C 0.22 10.25 4.25 85.63 0.36 10.61 16 18 C -0.54 -30.24 9.94 25.60 0.25 -29.98 16 19 H 0.03 2.10 8.06 -2.91 -0.02 2.08 16 20 C 0.01 0.69 5.47 84.65 0.46 1.15 16 21 N -0.94 -58.03 13.96 21.45 0.30 -57.73 16 22 Si 0.95 42.70 27.47 68.60 1.88 44.58 16 23 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 24 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 25 H -0.24 -9.44 6.54 99.48 0.65 -8.78 16 26 C 0.12 1.83 7.96 83.18 0.66 2.49 16 27 H 0.09 0.89 8.12 -2.39 -0.02 0.87 16 28 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.10 1.03 8.10 -2.39 -0.02 1.01 16 31 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.16 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.09 2.23 6.33 -2.38 -0.02 2.21 16 34 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.08 2.15 8.03 -2.38 -0.02 2.13 16 38 H 0.09 1.84 4.92 -2.39 -0.01 1.83 16 39 H 0.06 2.34 7.13 -2.39 -0.02 2.33 16 40 H 0.02 1.15 6.78 -2.39 -0.02 1.13 16 41 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 42 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 43 H 0.10 1.62 7.46 -2.39 -0.02 1.60 16 Total: -1.00 -83.91 366.18 4.57 -79.34 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: 0.96 Total: 10.96 kcal Atomic # 6 Polarization: 20.28 SS G_CDS: 6.92 Total: 27.19 kcal Atomic # 7 Polarization: -90.80 SS G_CDS: -5.29 Total: -96.09 kcal Atomic # 8 Polarization: -66.08 SS G_CDS: 0.10 Total: -65.98 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 1.88 Total: 44.58 kcal Total: -83.91 4.57 -79.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788157540.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.554 kcal (2) G-P(sol) polarization free energy of solvation -83.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds