Wall clock time and date at job start Fri Apr 10 2020 18:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21279 * 119.99926 * 2 1 4 4 N 1.34775 * 119.99773 * 179.97438 * 2 1 3 5 5 C 1.47063 * 136.06196 * 359.63468 * 4 2 1 6 6 C 1.53747 * 87.89242 * 152.96007 * 5 4 2 7 7 C 1.50695 * 114.27085 * 139.79317 * 6 5 4 8 8 O 1.20829 * 119.99863 * 266.48013 * 7 6 5 9 9 O 1.34233 * 120.00476 * 86.47060 * 7 6 5 10 10 C 1.45201 * 117.00291 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.46926 * 330.00491 * 10 9 7 12 12 C 1.52994 * 109.46870 * 90.00197 * 10 9 7 13 13 C 1.50705 * 109.46987 * 210.00262 * 10 9 7 14 14 O 1.21283 * 120.00005 * 0.02562 * 13 10 9 15 15 N 1.34769 * 119.99564 * 179.97438 * 13 10 9 16 16 C 1.46497 * 120.00602 * 0.02562 * 15 13 10 17 17 C 1.46503 * 119.99788 * 179.97438 * 15 13 10 18 18 C 1.50703 * 109.46904 * 90.00616 * 17 15 13 19 19 H 1.07999 * 119.99986 * 0.02562 * 18 17 15 20 20 C 1.37876 * 119.99824 * 180.02562 * 18 17 15 21 21 N 1.31510 * 120.00469 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99655 * 179.97438 * 20 18 17 23 23 H 1.48509 * 109.47061 * 60.00003 * 22 20 18 24 24 H 1.48500 * 109.47138 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.47517 * 300.00128 * 22 20 18 26 26 C 1.47066 * 136.05495 * 179.97438 * 4 2 1 27 27 H 1.09002 * 109.47152 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.46980 * 240.00238 * 1 2 3 29 29 H 1.09004 * 109.47113 * 120.00219 * 1 2 3 30 30 H 1.09000 * 113.46723 * 267.69839 * 5 4 2 31 31 H 1.09004 * 113.46617 * 38.12776 * 5 4 2 32 32 H 1.09007 * 114.39667 * 272.67638 * 6 5 4 33 33 H 1.09001 * 109.47125 * 179.97438 * 12 10 9 34 34 H 1.08994 * 109.47557 * 299.99903 * 12 10 9 35 35 H 1.09002 * 109.47106 * 60.00404 * 12 10 9 36 36 H 1.08998 * 109.47280 * 89.99085 * 16 15 13 37 37 H 1.08997 * 109.47215 * 209.99565 * 16 15 13 38 38 H 1.09003 * 109.46588 * 329.99664 * 16 15 13 39 39 H 1.08996 * 109.47454 * 210.00682 * 17 15 13 40 40 H 1.08997 * 109.47395 * 330.00969 * 17 15 13 41 41 H 0.96995 * 120.00141 * 180.02562 * 21 20 18 42 42 H 1.09001 * 113.47292 * 321.87108 * 26 4 2 43 43 H 1.09003 * 113.46573 * 92.31221 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.8266 -2.5945 0.0077 6 6 3.1645 -2.8719 -0.6972 7 6 3.8799 -4.1038 -0.2057 8 8 4.7110 -4.0122 0.6665 9 8 3.5937 -5.3030 -0.7367 10 6 4.3212 -6.4459 -0.2143 11 1 5.3083 -6.1264 0.1198 12 6 3.5522 -7.0439 0.9654 13 6 4.4687 -7.4846 -1.2962 14 8 4.0067 -7.2814 -2.3991 15 7 5.1150 -8.6387 -1.0385 16 6 5.6736 -8.8840 0.2934 17 6 5.2580 -9.6488 -2.0900 18 6 6.5320 -9.3998 -2.8557 19 1 7.1713 -8.5723 -2.5857 20 6 6.8812 -10.2285 -3.9008 21 7 6.1025 -11.2358 -4.2299 22 14 8.4600 -9.9194 -4.8503 23 1 9.6185 -10.0015 -3.9247 24 1 8.6051 -10.9432 -5.9162 25 1 8.4119 -8.5682 -5.4644 26 6 3.5941 -1.5740 0.0002 27 1 -0.3633 1.0277 -0.0005 28 1 -0.3633 -0.5138 0.8900 29 1 -0.3633 -0.5139 -0.8900 30 1 1.7665 -3.0218 1.0086 31 1 0.9552 -2.8285 -0.6040 32 1 3.1236 -2.8024 -1.7843 33 1 4.0981 -7.9022 1.3573 34 1 3.4455 -6.2927 1.7479 35 1 2.5651 -7.3634 0.6313 36 1 4.9261 -9.3755 0.9161 37 1 6.5519 -9.5235 0.2069 38 1 5.9583 -7.9352 0.7483 39 1 5.2931 -10.6404 -1.6390 40 1 4.4081 -9.5886 -2.7697 41 1 6.3485 -11.8190 -4.9649 42 1 4.2287 -0.9387 -0.6177 43 1 4.0005 -1.7321 0.9993 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000788157542.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:25 Heat of formation + Delta-G solvation = -103.660787 kcal Electronic energy + Delta-G solvation = -25924.994231 eV Core-core repulsion = 21972.779047 eV Total energy + Delta-G solvation = -3952.215184 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.47101 -40.23246 -39.04111 -38.02868 -36.43708 -35.01740 -32.98461 -31.88947 -31.41420 -29.26065 -27.72538 -26.48565 -26.32811 -25.14036 -24.00206 -22.37021 -20.60594 -19.46156 -18.95536 -18.35952 -17.40347 -16.90623 -16.58634 -16.48006 -16.20868 -15.84910 -15.53537 -15.16937 -14.68918 -14.29615 -14.24532 -13.65843 -13.55741 -13.31304 -13.17263 -12.98247 -12.87674 -12.75604 -12.49486 -12.36573 -12.24411 -12.15163 -11.71301 -11.45787 -11.34932 -11.20168 -10.97557 -10.81953 -10.74724 -10.60687 -10.25716 -10.21058 -9.71622 -9.23905 -8.98370 -8.48485 -7.79326 -6.09844 -4.15095 1.87818 2.08139 2.18987 2.59704 3.18828 3.29390 3.33854 3.37721 3.64671 3.79318 3.97646 4.33086 4.40108 4.50104 4.65674 4.76394 4.77618 4.87460 4.90905 4.95252 4.97360 5.02004 5.19006 5.21004 5.24834 5.42467 5.46765 5.55917 5.57198 5.57653 5.77408 5.90888 6.15979 6.28048 6.92039 7.21082 7.33202 7.39883 7.53711 7.70850 7.85735 8.15294 8.22582 8.78578 8.93470 9.50163 10.98253 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.022538 B = 0.002595 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.033022 B =10787.040500 C =11272.367340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.544 3.456 3 O -0.542 6.542 4 N -0.651 5.651 5 C 0.121 3.879 6 C -0.125 4.125 7 C 0.476 3.524 8 O -0.504 6.504 9 O -0.319 6.319 10 C 0.069 3.931 11 H 0.107 0.893 12 C -0.175 4.175 13 C 0.508 3.492 14 O -0.519 6.519 15 N -0.595 5.595 16 C 0.075 3.925 17 C 0.247 3.753 18 C -0.530 4.530 19 H 0.057 0.943 20 C 0.062 3.938 21 N -0.894 5.894 22 Si 0.899 3.101 23 H -0.277 1.277 24 H -0.286 1.286 25 H -0.276 1.276 26 C 0.122 3.878 27 H 0.094 0.906 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.144 0.856 33 H 0.094 0.906 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.052 0.948 37 H 0.079 0.921 38 H 0.059 0.941 39 H 0.036 0.964 40 H 0.046 0.954 41 H 0.265 0.735 42 H 0.091 0.909 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.540 13.938 13.084 21.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.335 3.665 3 O -0.419 6.419 4 N -0.388 5.388 5 C -0.003 4.003 6 C -0.145 4.145 7 C 0.318 3.682 8 O -0.391 6.391 9 O -0.234 6.234 10 C 0.011 3.989 11 H 0.125 0.875 12 C -0.232 4.232 13 C 0.292 3.708 14 O -0.395 6.395 15 N -0.329 5.329 16 C -0.069 4.069 17 C 0.129 3.871 18 C -0.569 4.569 19 H 0.075 0.925 20 C -0.140 4.140 21 N -0.533 5.533 22 Si 0.726 3.274 23 H -0.202 1.202 24 H -0.211 1.211 25 H -0.201 1.201 26 C 0.000 4.000 27 H 0.113 0.887 28 H 0.107 0.893 29 H 0.109 0.891 30 H 0.113 0.887 31 H 0.116 0.884 32 H 0.162 0.838 33 H 0.112 0.888 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.070 0.930 37 H 0.097 0.903 38 H 0.077 0.923 39 H 0.054 0.946 40 H 0.064 0.936 41 H 0.074 0.926 42 H 0.110 0.890 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -10.370 14.657 12.609 21.939 hybrid contribution 1.105 -0.116 -0.420 1.187 sum -9.265 14.540 12.189 21.115 Atomic orbital electron populations 1.21877 0.90648 1.05633 1.04527 1.20430 0.90202 0.80966 0.74921 1.90754 1.70874 1.30150 1.50087 1.49565 1.09444 1.05546 1.74207 1.22947 0.96746 0.79437 1.01132 1.22878 0.97521 0.90215 1.03926 1.23061 0.80689 0.84873 0.79581 1.90674 1.32037 1.86621 1.29812 1.86613 1.60799 1.15159 1.60835 1.22673 0.97492 0.84420 0.94346 0.87519 1.22402 1.01999 1.02556 0.96290 1.19750 0.80057 0.82764 0.88185 1.90712 1.48091 1.77212 1.23479 1.48067 1.53682 1.17940 1.13186 1.21892 0.99254 1.01299 0.84405 1.19355 0.98121 0.84876 0.84797 1.21376 1.06416 1.13361 1.15766 0.92475 1.24928 0.97344 0.94954 0.96780 1.69911 1.37426 1.16641 1.29281 0.86544 0.83155 0.78100 0.79550 1.20208 1.21113 1.20131 1.22903 0.84467 0.90739 1.01916 0.88680 0.89290 0.89109 0.88697 0.88359 0.83836 0.88791 0.91369 0.90913 0.92977 0.90270 0.92277 0.94572 0.93628 0.92561 0.89047 0.87928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.91 10.15 36.01 0.37 -0.54 16 2 C 0.54 5.39 8.19 -10.98 -0.09 5.30 16 3 O -0.54 -7.84 17.86 5.56 0.10 -7.75 16 4 N -0.65 -5.62 3.69 -185.10 -0.68 -6.31 16 5 C 0.12 0.77 8.00 -8.39 -0.07 0.70 16 6 C -0.13 -1.08 4.61 -91.14 -0.42 -1.50 16 7 C 0.48 5.78 7.50 36.00 0.27 6.05 16 8 O -0.50 -6.94 15.17 -18.75 -0.28 -7.22 16 9 O -0.32 -4.72 9.41 -45.91 -0.43 -5.15 16 10 C 0.07 1.05 2.18 -27.88 -0.06 0.99 16 11 H 0.11 1.57 6.41 -51.93 -0.33 1.24 16 12 C -0.18 -2.00 9.18 37.15 0.34 -1.66 16 13 C 0.51 10.35 7.15 -10.99 -0.08 10.27 16 14 O -0.52 -12.97 16.08 -14.11 -0.23 -13.20 16 15 N -0.60 -12.07 2.86 -182.96 -0.52 -12.59 16 16 C 0.08 1.10 8.80 59.85 0.53 1.63 16 17 C 0.25 6.25 5.16 -5.19 -0.03 6.23 16 18 C -0.53 -14.74 9.39 -34.44 -0.32 -15.07 16 19 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 20 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 21 N -0.89 -26.06 13.29 55.43 0.74 -25.32 16 22 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 26 C 0.12 1.10 7.96 -8.53 -0.07 1.03 16 27 H 0.09 0.51 8.12 -51.93 -0.42 0.09 16 28 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.09 0.51 8.10 -51.93 -0.42 0.09 16 31 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.14 1.12 8.14 -51.92 -0.42 0.70 16 33 H 0.09 0.96 4.53 -51.93 -0.24 0.72 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.05 0.62 6.95 -51.93 -0.36 0.26 16 37 H 0.08 1.20 8.07 -51.93 -0.42 0.78 16 38 H 0.06 0.72 6.01 -51.93 -0.31 0.41 16 39 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 40 H 0.05 1.30 7.42 -51.93 -0.39 0.92 16 41 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 42 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.10 0.94 7.46 -51.93 -0.39 0.56 16 LS Contribution 367.22 15.07 5.53 5.53 Total: -1.00 -37.00 367.22 -6.73 -43.73 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: -6.20 Total: -3.36 kcal Atomic # 6 Polarization: 14.80 SS G_CDS: 0.27 Total: 15.08 kcal Atomic # 7 Polarization: -43.76 SS G_CDS: -0.47 Total: -44.22 kcal Atomic # 8 Polarization: -32.47 SS G_CDS: -0.84 Total: -33.31 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -37.00 -6.73 -43.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788157542.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.934 kcal (2) G-P(sol) polarization free energy of solvation -37.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds