Wall clock time and date at job start Fri Apr 10 2020 18:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21279 * 119.99926 * 2 1 4 4 N 1.34775 * 119.99773 * 179.97438 * 2 1 3 5 5 C 1.47063 * 136.06196 * 359.63468 * 4 2 1 6 6 C 1.53747 * 87.89242 * 152.96007 * 5 4 2 7 7 C 1.50695 * 114.27085 * 139.79317 * 6 5 4 8 8 O 1.20829 * 119.99863 * 266.48013 * 7 6 5 9 9 O 1.34233 * 120.00476 * 86.47060 * 7 6 5 10 10 C 1.45201 * 117.00291 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.46926 * 330.00491 * 10 9 7 12 12 C 1.52994 * 109.46870 * 90.00197 * 10 9 7 13 13 C 1.50705 * 109.46987 * 210.00262 * 10 9 7 14 14 O 1.21283 * 120.00005 * 0.02562 * 13 10 9 15 15 N 1.34769 * 119.99564 * 179.97438 * 13 10 9 16 16 C 1.46497 * 120.00602 * 0.02562 * 15 13 10 17 17 C 1.46503 * 119.99788 * 179.97438 * 15 13 10 18 18 C 1.50703 * 109.46904 * 90.00616 * 17 15 13 19 19 H 1.07999 * 119.99986 * 0.02562 * 18 17 15 20 20 C 1.37876 * 119.99824 * 180.02562 * 18 17 15 21 21 N 1.31510 * 120.00469 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99655 * 179.97438 * 20 18 17 23 23 H 1.48509 * 109.47061 * 60.00003 * 22 20 18 24 24 H 1.48500 * 109.47138 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.47517 * 300.00128 * 22 20 18 26 26 C 1.47066 * 136.05495 * 179.97438 * 4 2 1 27 27 H 1.09002 * 109.47152 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.46980 * 240.00238 * 1 2 3 29 29 H 1.09004 * 109.47113 * 120.00219 * 1 2 3 30 30 H 1.09000 * 113.46723 * 267.69839 * 5 4 2 31 31 H 1.09004 * 113.46617 * 38.12776 * 5 4 2 32 32 H 1.09007 * 114.39667 * 272.67638 * 6 5 4 33 33 H 1.09001 * 109.47125 * 179.97438 * 12 10 9 34 34 H 1.08994 * 109.47557 * 299.99903 * 12 10 9 35 35 H 1.09002 * 109.47106 * 60.00404 * 12 10 9 36 36 H 1.08998 * 109.47280 * 89.99085 * 16 15 13 37 37 H 1.08997 * 109.47215 * 209.99565 * 16 15 13 38 38 H 1.09003 * 109.46588 * 329.99664 * 16 15 13 39 39 H 1.08996 * 109.47454 * 210.00682 * 17 15 13 40 40 H 1.08997 * 109.47395 * 330.00969 * 17 15 13 41 41 H 0.96995 * 120.00141 * 180.02562 * 21 20 18 42 42 H 1.09001 * 113.47292 * 321.87108 * 26 4 2 43 43 H 1.09003 * 113.46573 * 92.31221 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.8266 -2.5945 0.0077 6 6 3.1645 -2.8719 -0.6972 7 6 3.8799 -4.1038 -0.2057 8 8 4.7110 -4.0122 0.6665 9 8 3.5937 -5.3030 -0.7367 10 6 4.3212 -6.4459 -0.2143 11 1 5.3083 -6.1264 0.1198 12 6 3.5522 -7.0439 0.9654 13 6 4.4687 -7.4846 -1.2962 14 8 4.0067 -7.2814 -2.3991 15 7 5.1150 -8.6387 -1.0385 16 6 5.6736 -8.8840 0.2934 17 6 5.2580 -9.6488 -2.0900 18 6 6.5320 -9.3998 -2.8557 19 1 7.1713 -8.5723 -2.5857 20 6 6.8812 -10.2285 -3.9008 21 7 6.1025 -11.2358 -4.2299 22 14 8.4600 -9.9194 -4.8503 23 1 9.6185 -10.0015 -3.9247 24 1 8.6051 -10.9432 -5.9162 25 1 8.4119 -8.5682 -5.4644 26 6 3.5941 -1.5740 0.0002 27 1 -0.3633 1.0277 -0.0005 28 1 -0.3633 -0.5138 0.8900 29 1 -0.3633 -0.5139 -0.8900 30 1 1.7665 -3.0218 1.0086 31 1 0.9552 -2.8285 -0.6040 32 1 3.1236 -2.8024 -1.7843 33 1 4.0981 -7.9022 1.3573 34 1 3.4455 -6.2927 1.7479 35 1 2.5651 -7.3634 0.6313 36 1 4.9261 -9.3755 0.9161 37 1 6.5519 -9.5235 0.2069 38 1 5.9583 -7.9352 0.7483 39 1 5.2931 -10.6404 -1.6390 40 1 4.4081 -9.5886 -2.7697 41 1 6.3485 -11.8190 -4.9649 42 1 4.2287 -0.9387 -0.6177 43 1 4.0005 -1.7321 0.9993 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000788157542.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:24 Heat of formation + Delta-G solvation = -129.159583 kcal Electronic energy + Delta-G solvation = -25926.099942 eV Core-core repulsion = 21972.779047 eV Total energy + Delta-G solvation = -3953.320895 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.36002 -41.26837 -40.38133 -38.91999 -37.53867 -36.71056 -34.92182 -33.11355 -32.24500 -29.92044 -29.48376 -27.72394 -27.08703 -26.18784 -25.47207 -23.82944 -21.57944 -20.45470 -20.10588 -19.32341 -18.68510 -18.24955 -17.94877 -17.62147 -17.28770 -17.08968 -16.63597 -16.44895 -16.16682 -15.67905 -15.21126 -14.81681 -14.56065 -14.35607 -14.21163 -13.98885 -13.75845 -13.62891 -13.60500 -13.45001 -13.32955 -13.24630 -13.01393 -12.96100 -12.79336 -12.59963 -12.40071 -12.19380 -12.02102 -11.91141 -11.74821 -11.68897 -11.06626 -10.64827 -10.60203 -9.95495 -9.50653 -8.23811 -6.38226 0.92274 1.16118 1.36850 1.40485 1.47632 1.49005 1.64081 1.79180 2.32884 2.45424 2.95572 3.06285 3.37622 3.41172 3.54615 3.75467 3.83082 3.88000 4.01518 4.25624 4.33955 4.40101 4.43994 4.54313 4.56949 4.63209 4.67673 4.68883 4.70914 4.89683 4.90417 4.96739 5.08393 5.14838 5.20326 5.29576 5.51370 5.78340 6.03565 6.49173 6.55170 6.64085 6.70801 6.98784 7.21587 7.36546 8.83143 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.022538 B = 0.002595 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.033022 B =10787.040500 C =11272.367340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.535 3.465 3 O -0.599 6.599 4 N -0.651 5.651 5 C 0.131 3.869 6 C -0.122 4.122 7 C 0.480 3.520 8 O -0.520 6.520 9 O -0.336 6.336 10 C 0.079 3.921 11 H 0.114 0.886 12 C -0.167 4.167 13 C 0.498 3.502 14 O -0.579 6.579 15 N -0.600 5.600 16 C 0.068 3.932 17 C 0.260 3.740 18 C -0.547 4.547 19 H 0.052 0.948 20 C 0.010 3.990 21 N -0.925 5.925 22 Si 0.964 3.036 23 H -0.261 1.261 24 H -0.277 1.277 25 H -0.279 1.279 26 C 0.116 3.884 27 H 0.093 0.907 28 H 0.112 0.888 29 H 0.112 0.888 30 H 0.111 0.889 31 H 0.128 0.872 32 H 0.152 0.848 33 H 0.109 0.891 34 H 0.091 0.909 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.072 0.928 38 H 0.089 0.911 39 H 0.033 0.967 40 H 0.002 0.998 41 H 0.268 0.732 42 H 0.083 0.917 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.917 14.252 14.707 23.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.329 3.671 3 O -0.481 6.481 4 N -0.386 5.386 5 C 0.009 3.991 6 C -0.142 4.142 7 C 0.323 3.677 8 O -0.409 6.409 9 O -0.251 6.251 10 C 0.021 3.979 11 H 0.132 0.868 12 C -0.224 4.224 13 C 0.286 3.714 14 O -0.459 6.459 15 N -0.332 5.332 16 C -0.074 4.074 17 C 0.139 3.861 18 C -0.585 4.585 19 H 0.070 0.930 20 C -0.189 4.189 21 N -0.565 5.565 22 Si 0.789 3.211 23 H -0.185 1.185 24 H -0.202 1.202 25 H -0.205 1.205 26 C -0.007 4.007 27 H 0.111 0.889 28 H 0.131 0.869 29 H 0.131 0.869 30 H 0.129 0.871 31 H 0.146 0.854 32 H 0.169 0.831 33 H 0.127 0.873 34 H 0.110 0.890 35 H 0.090 0.910 36 H 0.105 0.895 37 H 0.091 0.909 38 H 0.108 0.892 39 H 0.051 0.949 40 H 0.020 0.980 41 H 0.077 0.923 42 H 0.102 0.898 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -10.745 14.939 14.295 23.302 hybrid contribution 1.225 -0.226 -0.904 1.539 sum -9.520 14.713 13.391 22.055 Atomic orbital electron populations 1.21908 0.86921 1.06306 1.06609 1.21312 0.91907 0.80257 0.73629 1.90725 1.72278 1.32177 1.52872 1.49637 1.09279 1.06437 1.73261 1.23126 0.96264 0.77493 1.02235 1.22921 0.98805 0.88024 1.04410 1.23599 0.80423 0.84634 0.79021 1.90664 1.32865 1.86644 1.30702 1.86622 1.60932 1.15873 1.61696 1.22543 0.98914 0.83480 0.92994 0.86810 1.22412 1.01473 1.03539 0.94940 1.20707 0.78667 0.83349 0.88725 1.90671 1.50463 1.78515 1.26247 1.48042 1.53775 1.17169 1.14229 1.22246 0.99916 1.03303 0.81930 1.18832 0.95494 0.86215 0.85521 1.21662 1.07169 1.13176 1.16520 0.93020 1.25808 1.00716 0.94682 0.97702 1.70021 1.39137 1.17449 1.29865 0.85516 0.79487 0.77702 0.78408 1.18521 1.20241 1.20504 1.22919 0.85106 0.90902 1.01775 0.88853 0.86939 0.86942 0.87088 0.85444 0.83075 0.87295 0.88999 0.90992 0.89495 0.90898 0.89243 0.94883 0.98012 0.92298 0.89824 0.88124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.31 10.15 71.24 0.72 -0.58 16 2 C 0.54 10.00 8.19 87.66 0.72 10.72 16 3 O -0.60 -17.60 17.86 -3.03 -0.05 -17.65 16 4 N -0.65 -10.13 3.69 -857.92 -3.16 -13.29 16 5 C 0.13 1.26 8.00 83.26 0.67 1.93 16 6 C -0.12 -1.89 4.61 -11.13 -0.05 -1.95 16 7 C 0.48 10.86 7.50 71.23 0.53 11.40 16 8 O -0.52 -13.42 15.17 21.95 0.33 -13.08 16 9 O -0.34 -9.50 9.41 -45.09 -0.42 -9.93 16 10 C 0.08 2.27 2.18 29.85 0.07 2.34 16 11 H 0.11 3.12 6.41 -2.39 -0.02 3.10 16 12 C -0.17 -3.28 9.18 71.98 0.66 -2.62 16 13 C 0.50 20.40 7.15 87.66 0.63 21.03 16 14 O -0.58 -30.00 16.08 15.76 0.25 -29.74 16 15 N -0.60 -24.32 2.86 -851.14 -2.43 -26.75 16 16 C 0.07 1.83 8.80 127.77 1.12 2.95 16 17 C 0.26 13.60 5.16 85.63 0.44 14.04 16 18 C -0.55 -30.98 9.39 25.60 0.24 -30.74 16 19 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16 20 C 0.01 0.59 5.46 84.65 0.46 1.05 16 21 N -0.93 -54.93 13.29 21.45 0.28 -54.65 16 22 Si 0.96 44.39 29.54 68.60 2.03 46.42 16 23 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 24 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 25 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 26 C 0.12 1.99 7.96 83.17 0.66 2.65 16 27 H 0.09 0.83 8.12 -2.39 -0.02 0.81 16 28 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.11 0.47 8.14 -2.38 -0.02 0.45 16 30 H 0.11 0.79 8.10 -2.39 -0.02 0.77 16 31 H 0.13 0.56 8.14 -2.38 -0.02 0.55 16 32 H 0.15 2.15 8.14 -2.38 -0.02 2.13 16 33 H 0.11 1.79 4.53 -2.39 -0.01 1.78 16 34 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.09 1.78 6.95 -2.39 -0.02 1.76 16 37 H 0.07 2.09 8.07 -2.39 -0.02 2.07 16 38 H 0.09 1.89 6.01 -2.39 -0.01 1.87 16 39 H 0.03 1.72 8.07 -2.39 -0.02 1.70 16 40 H 0.00 0.11 7.42 -2.39 -0.02 0.09 16 41 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 42 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.10 1.77 7.46 -2.39 -0.02 1.76 16 Total: -1.00 -84.89 367.22 4.72 -80.17 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: 1.02 Total: 6.29 kcal Atomic # 6 Polarization: 25.34 SS G_CDS: 6.87 Total: 32.22 kcal Atomic # 7 Polarization: -89.38 SS G_CDS: -5.31 Total: -94.69 kcal Atomic # 8 Polarization: -70.51 SS G_CDS: 0.11 Total: -70.40 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -84.89 4.72 -80.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788157542.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.989 kcal (2) G-P(sol) polarization free energy of solvation -84.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds