Wall clock time and date at job start Fri Apr 10 2020 18:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46497 * 109.47422 * 2 1 4 4 C 1.46507 * 119.99454 * 269.99810 * 3 2 1 5 5 C 1.50694 * 109.47065 * 269.99785 * 4 3 2 6 6 H 1.08007 * 120.00292 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00100 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00245 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 119.99865 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.47038 * 89.99927 * 9 7 5 11 11 H 1.48497 * 109.47392 * 210.00152 * 9 7 5 12 12 H 1.48502 * 109.47242 * 330.00284 * 9 7 5 13 13 C 1.34772 * 120.00289 * 89.99877 * 3 2 1 14 14 O 1.21279 * 119.99853 * 180.02562 * 13 3 2 15 15 C 1.50695 * 119.99954 * 359.97438 * 13 3 2 16 16 O 1.45205 * 109.47198 * 180.02562 * 15 13 3 17 17 C 1.34225 * 117.00065 * 180.02562 * 16 15 13 18 18 O 1.20830 * 120.00033 * 359.97438 * 17 16 15 19 19 C 1.50699 * 120.00092 * 180.02562 * 17 16 15 20 20 C 1.53494 * 114.20890 * 180.02562 * 19 17 16 21 21 N 1.47068 * 87.98741 * 220.14448 * 20 19 17 22 22 C 1.34770 * 136.06023 * 207.08795 * 21 20 19 23 23 C 1.50703 * 120.00142 * 179.97438 * 22 21 20 24 24 O 1.21278 * 120.00031 * 359.97438 * 22 21 20 25 25 C 1.47073 * 87.88380 * 27.33684 * 21 20 19 26 26 H 1.08998 * 109.46994 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46893 * 300.00373 * 1 2 3 28 28 H 1.09003 * 109.46842 * 60.00144 * 1 2 3 29 29 H 1.09001 * 109.47417 * 239.99094 * 2 1 3 30 30 H 1.09003 * 109.46842 * 119.99856 * 2 1 3 31 31 H 1.08993 * 109.47073 * 30.00305 * 4 3 2 32 32 H 1.09007 * 109.46772 * 149.99886 * 4 3 2 33 33 H 0.97000 * 120.00193 * 180.02562 * 8 7 5 34 34 H 1.09004 * 109.47383 * 60.00312 * 15 13 3 35 35 H 1.08996 * 109.47271 * 300.00347 * 15 13 3 36 36 H 1.09004 * 113.27863 * 313.06300 * 19 17 16 37 37 H 1.08999 * 113.47287 * 105.35872 * 20 19 17 38 38 H 1.09004 * 113.46400 * 334.92119 * 20 19 17 39 39 H 1.09002 * 109.47152 * 359.97438 * 23 22 21 40 40 H 1.09001 * 109.46980 * 239.99906 * 23 22 21 41 41 H 1.09004 * 109.47113 * 119.99887 * 23 22 21 42 42 H 1.08996 * 113.46538 * 87.43892 * 25 21 20 43 43 H 1.08992 * 113.47227 * 217.88212 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 -1.2689 5 6 3.6858 1.8348 -1.7038 6 1 4.3428 1.2300 -1.0961 7 6 4.1495 2.3901 -2.8775 8 7 5.3918 2.1838 -3.2569 9 14 3.0133 3.4355 -3.9289 10 1 3.1159 4.8557 -3.5072 11 1 3.4069 3.3131 -5.3555 12 1 1.6137 2.9689 -3.7598 13 6 2.2431 2.0165 1.1671 14 8 2.6469 3.1601 1.1670 15 6 1.9913 1.3064 2.4722 16 8 2.3054 2.1962 3.5759 17 6 2.1343 1.7126 4.8162 18 8 1.7349 0.5833 4.9746 19 6 2.4394 2.5785 6.0113 20 6 2.1977 1.8931 7.3633 21 7 1.6410 3.1644 7.8497 22 6 1.5187 3.7765 9.0441 23 6 0.8617 5.1298 9.1337 24 8 1.9375 3.2382 10.0470 25 6 1.2706 3.4711 6.4598 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5140 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.5818 1.6876 -2.0284 32 1 2.0957 3.1410 -1.1386 33 1 5.7181 2.5748 -4.0825 34 1 2.6211 0.4187 2.5303 35 1 0.9433 1.0127 2.5298 36 1 3.3969 3.0939 5.9367 37 1 3.1162 1.5988 7.8711 38 1 1.4646 1.0877 7.3167 39 1 0.5527 5.4502 8.1387 40 1 1.5691 5.8507 9.5437 41 1 -0.0114 5.0676 9.7833 42 1 0.2931 3.0818 6.1751 43 1 1.3992 4.5213 6.1979 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000788158163.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:27 Heat of formation + Delta-G solvation = -106.038781 kcal Electronic energy + Delta-G solvation = -25650.257968 eV Core-core repulsion = 21697.939666 eV Total energy + Delta-G solvation = -3952.318302 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.47617 -40.15936 -39.13235 -38.06987 -36.49550 -35.48777 -32.81466 -31.72180 -30.53863 -29.82568 -28.96852 -27.10581 -26.49278 -24.47238 -23.11380 -22.31629 -20.76071 -19.46738 -18.77973 -18.28919 -17.45779 -17.18150 -16.93645 -16.66087 -16.37330 -16.07722 -15.63062 -15.23077 -14.77673 -14.31913 -14.09593 -13.62891 -13.61664 -13.40753 -13.28101 -13.12023 -12.92250 -12.78915 -12.59863 -12.46541 -12.32461 -12.23477 -11.90753 -11.52982 -11.36646 -11.09310 -10.98820 -10.85003 -10.68966 -10.56852 -10.27344 -10.22408 -9.61332 -9.26560 -9.18807 -8.64466 -7.89268 -6.14049 -4.13750 1.82518 2.02425 2.17417 2.54740 3.08259 3.24962 3.30726 3.32702 3.61828 3.66887 3.95595 4.31156 4.34303 4.50557 4.63491 4.69589 4.73580 4.89005 4.94491 4.99762 5.01333 5.07060 5.16983 5.17776 5.19003 5.23676 5.42954 5.43143 5.53254 5.59182 5.86652 6.04483 6.15131 6.29086 6.59611 6.83674 7.17281 7.19100 7.45676 7.53387 7.69614 8.03858 8.38995 8.74042 8.89103 9.45229 10.99168 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.022749 B = 0.002526 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.549220 B =11081.043298 C =11579.265552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.101 3.899 3 N -0.587 5.587 4 C 0.218 3.782 5 C -0.532 4.532 6 H 0.075 0.925 7 C 0.073 3.927 8 N -0.895 5.895 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.266 1.266 13 C 0.509 3.491 14 O -0.518 6.518 15 C 0.050 3.950 16 O -0.323 6.323 17 C 0.476 3.524 18 O -0.504 6.504 19 C -0.125 4.125 20 C 0.122 3.878 21 N -0.650 5.650 22 C 0.544 3.456 23 C -0.166 4.166 24 O -0.543 6.543 25 C 0.119 3.881 26 H 0.065 0.935 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.090 0.910 30 H 0.068 0.932 31 H 0.033 0.967 32 H 0.038 0.962 33 H 0.265 0.735 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.144 0.856 37 H 0.091 0.909 38 H 0.103 0.897 39 H 0.077 0.923 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.366 0.358 17.731 21.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.023 4.023 3 N -0.320 5.320 4 C 0.098 3.902 5 C -0.570 4.570 6 H 0.093 0.907 7 C -0.130 4.130 8 N -0.534 5.534 9 Si 0.703 3.297 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.191 1.191 13 C 0.294 3.706 14 O -0.393 6.393 15 C -0.028 4.028 16 O -0.238 6.238 17 C 0.318 3.682 18 O -0.391 6.391 19 C -0.145 4.145 20 C 0.000 4.000 21 N -0.387 5.387 22 C 0.336 3.664 23 C -0.225 4.225 24 O -0.420 6.420 25 C -0.004 4.004 26 H 0.083 0.917 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.109 0.891 30 H 0.086 0.914 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.075 0.925 34 H 0.117 0.883 35 H 0.115 0.885 36 H 0.162 0.838 37 H 0.110 0.890 38 H 0.121 0.879 39 H 0.096 0.904 40 H 0.116 0.884 41 H 0.115 0.885 42 H 0.114 0.886 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -11.937 0.522 18.352 21.899 hybrid contribution -0.465 0.230 -0.890 1.030 sum -12.402 0.752 17.462 21.431 Atomic orbital electron populations 1.22245 0.96456 1.01919 1.02309 1.21551 0.93662 0.83543 1.03555 1.47880 1.64126 1.13558 1.06480 1.19708 0.97559 0.93426 0.79489 1.21303 0.95247 1.33187 1.07303 0.90692 1.24856 0.95016 0.95765 0.97329 1.69892 1.15103 1.44787 1.23581 0.86849 0.81389 0.81616 0.79815 1.19845 1.21028 1.19057 1.19696 0.79490 0.87131 0.84293 1.90721 1.44292 1.17562 1.86727 1.22983 1.02889 0.92699 0.84183 1.86565 1.78162 1.44841 1.14187 1.23074 0.74283 0.86480 0.84373 1.90692 1.42154 1.19644 1.86659 1.22876 1.03148 0.98441 0.90005 1.22907 1.00600 0.88094 0.88445 1.49631 1.60581 1.21723 1.06733 1.20440 0.78414 0.87374 0.80201 1.21823 1.02619 0.93581 1.04514 1.90751 1.49729 1.67447 1.34085 1.22970 0.97168 1.01341 0.78913 0.91653 0.93055 0.91950 0.89133 0.91363 0.94864 0.94399 0.92476 0.88279 0.88513 0.83807 0.89024 0.87925 0.90373 0.88400 0.88456 0.88638 0.88235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.95 10.24 37.16 0.38 -1.57 16 2 C 0.10 1.44 5.93 -4.04 -0.02 1.41 16 3 N -0.59 -11.30 2.46 -175.06 -0.43 -11.73 16 4 C 0.22 5.07 4.23 -5.19 -0.02 5.05 16 5 C -0.53 -14.78 9.94 -34.44 -0.34 -15.12 16 6 H 0.07 2.29 8.06 -52.48 -0.42 1.87 16 7 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 8 N -0.90 -27.05 13.96 55.43 0.77 -26.28 16 9 Si 0.88 20.91 27.47 -169.99 -4.67 16.24 16 10 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.27 -5.91 6.54 56.52 0.37 -5.54 16 13 C 0.51 9.84 7.75 -10.99 -0.09 9.75 16 14 O -0.52 -12.30 16.08 -14.10 -0.23 -12.52 16 15 C 0.05 0.71 4.50 36.00 0.16 0.87 16 16 O -0.32 -4.57 9.75 -45.89 -0.45 -5.02 16 17 C 0.48 5.41 7.53 36.01 0.27 5.68 16 18 O -0.50 -6.53 15.70 -18.75 -0.29 -6.83 16 19 C -0.12 -1.01 4.61 -91.13 -0.42 -1.43 16 20 C 0.12 1.03 7.96 -8.50 -0.07 0.97 16 21 N -0.65 -5.50 3.69 -185.04 -0.68 -6.18 16 22 C 0.54 5.32 8.19 -10.99 -0.09 5.23 16 23 C -0.17 -0.91 10.36 36.01 0.37 -0.53 16 24 O -0.54 -7.73 17.88 5.56 0.10 -7.64 16 25 C 0.12 0.76 7.58 -8.36 -0.06 0.70 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.55 7.22 -51.93 -0.37 0.17 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.09 1.35 8.07 -51.93 -0.42 0.93 16 30 H 0.07 0.82 6.44 -51.93 -0.33 0.48 16 31 H 0.03 0.73 7.13 -51.93 -0.37 0.36 16 32 H 0.04 0.94 6.85 -51.93 -0.36 0.59 16 33 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 34 H 0.10 1.30 7.39 -51.93 -0.38 0.92 16 35 H 0.10 1.14 7.18 -51.93 -0.37 0.77 16 36 H 0.14 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.10 0.89 7.46 -51.93 -0.39 0.51 16 39 H 0.08 0.29 7.31 -51.93 -0.38 -0.09 16 40 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.10 0.54 8.10 -51.93 -0.42 0.12 16 43 H 0.10 0.45 7.94 -51.93 -0.41 0.04 16 LS Contribution 368.33 15.07 5.55 5.55 Total: -1.00 -37.39 368.33 -6.69 -44.08 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: -6.34 Total: -2.67 kcal Atomic # 6 Polarization: 13.01 SS G_CDS: -0.03 Total: 12.99 kcal Atomic # 7 Polarization: -43.85 SS G_CDS: -0.34 Total: -44.19 kcal Atomic # 8 Polarization: -31.13 SS G_CDS: -0.87 Total: -32.00 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.67 Total: 16.24 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -37.39 -6.69 -44.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788158163.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.963 kcal (2) G-P(sol) polarization free energy of solvation -37.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds