Wall clock time and date at job start Fri Apr 10 2020 18:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46497 * 109.47422 * 2 1 4 4 C 1.46507 * 119.99454 * 269.99810 * 3 2 1 5 5 C 1.50694 * 109.47065 * 269.99785 * 4 3 2 6 6 H 1.08007 * 120.00292 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00100 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00245 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 119.99865 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.47038 * 89.99927 * 9 7 5 11 11 H 1.48497 * 109.47392 * 210.00152 * 9 7 5 12 12 H 1.48502 * 109.47242 * 330.00284 * 9 7 5 13 13 C 1.34772 * 120.00289 * 89.99877 * 3 2 1 14 14 O 1.21279 * 119.99853 * 180.02562 * 13 3 2 15 15 C 1.50695 * 119.99954 * 359.97438 * 13 3 2 16 16 O 1.45205 * 109.47198 * 180.02562 * 15 13 3 17 17 C 1.34225 * 117.00065 * 180.02562 * 16 15 13 18 18 O 1.20830 * 120.00033 * 359.97438 * 17 16 15 19 19 C 1.50699 * 120.00092 * 180.02562 * 17 16 15 20 20 C 1.53494 * 114.20890 * 180.02562 * 19 17 16 21 21 N 1.47068 * 87.98741 * 220.14448 * 20 19 17 22 22 C 1.34770 * 136.06023 * 207.08795 * 21 20 19 23 23 C 1.50703 * 120.00142 * 179.97438 * 22 21 20 24 24 O 1.21278 * 120.00031 * 359.97438 * 22 21 20 25 25 C 1.47073 * 87.88380 * 27.33684 * 21 20 19 26 26 H 1.08998 * 109.46994 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46893 * 300.00373 * 1 2 3 28 28 H 1.09003 * 109.46842 * 60.00144 * 1 2 3 29 29 H 1.09001 * 109.47417 * 239.99094 * 2 1 3 30 30 H 1.09003 * 109.46842 * 119.99856 * 2 1 3 31 31 H 1.08993 * 109.47073 * 30.00305 * 4 3 2 32 32 H 1.09007 * 109.46772 * 149.99886 * 4 3 2 33 33 H 0.97000 * 120.00193 * 180.02562 * 8 7 5 34 34 H 1.09004 * 109.47383 * 60.00312 * 15 13 3 35 35 H 1.08996 * 109.47271 * 300.00347 * 15 13 3 36 36 H 1.09004 * 113.27863 * 313.06300 * 19 17 16 37 37 H 1.08999 * 113.47287 * 105.35872 * 20 19 17 38 38 H 1.09004 * 113.46400 * 334.92119 * 20 19 17 39 39 H 1.09002 * 109.47152 * 359.97438 * 23 22 21 40 40 H 1.09001 * 109.46980 * 239.99906 * 23 22 21 41 41 H 1.09004 * 109.47113 * 119.99887 * 23 22 21 42 42 H 1.08996 * 113.46538 * 87.43892 * 25 21 20 43 43 H 1.08992 * 113.47227 * 217.88212 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 -1.2689 5 6 3.6858 1.8348 -1.7038 6 1 4.3428 1.2300 -1.0961 7 6 4.1495 2.3901 -2.8775 8 7 5.3918 2.1838 -3.2569 9 14 3.0133 3.4355 -3.9289 10 1 3.1159 4.8557 -3.5072 11 1 3.4069 3.3131 -5.3555 12 1 1.6137 2.9689 -3.7598 13 6 2.2431 2.0165 1.1671 14 8 2.6469 3.1601 1.1670 15 6 1.9913 1.3064 2.4722 16 8 2.3054 2.1962 3.5759 17 6 2.1343 1.7126 4.8162 18 8 1.7349 0.5833 4.9746 19 6 2.4394 2.5785 6.0113 20 6 2.1977 1.8931 7.3633 21 7 1.6410 3.1644 7.8497 22 6 1.5187 3.7765 9.0441 23 6 0.8617 5.1298 9.1337 24 8 1.9375 3.2382 10.0470 25 6 1.2706 3.4711 6.4598 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5140 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.5818 1.6876 -2.0284 32 1 2.0957 3.1410 -1.1386 33 1 5.7181 2.5748 -4.0825 34 1 2.6211 0.4187 2.5303 35 1 0.9433 1.0127 2.5298 36 1 3.3969 3.0939 5.9367 37 1 3.1162 1.5988 7.8711 38 1 1.4646 1.0877 7.3167 39 1 0.5527 5.4502 8.1387 40 1 1.5691 5.8507 9.5437 41 1 -0.0114 5.0676 9.7833 42 1 0.2931 3.0818 6.1751 43 1 1.3992 4.5213 6.1979 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000788158163.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:26 Heat of formation + Delta-G solvation = -132.100369 kcal Electronic energy + Delta-G solvation = -25651.388083 eV Core-core repulsion = 21697.939666 eV Total energy + Delta-G solvation = -3953.448417 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.30095 -41.16712 -40.44158 -38.91421 -37.55002 -36.98279 -34.86838 -32.44139 -32.02175 -30.87449 -29.86249 -28.63467 -27.08053 -25.40303 -24.43230 -23.91952 -21.64700 -20.22885 -20.08641 -19.23415 -19.10865 -18.25017 -18.07918 -17.71380 -17.62712 -17.06764 -16.76773 -16.31485 -16.18734 -15.63652 -15.28560 -14.75781 -14.66881 -14.43800 -14.27726 -14.21145 -13.88892 -13.76219 -13.61765 -13.42945 -13.34460 -13.28271 -13.14820 -12.96654 -12.55035 -12.40754 -12.12794 -12.00978 -12.00263 -11.77712 -11.73823 -11.73105 -11.06903 -10.82113 -10.76222 -9.95953 -9.50731 -8.32762 -6.38428 0.94015 1.10588 1.35368 1.39150 1.47254 1.47870 1.60419 1.77922 2.32411 2.37997 2.95916 3.01679 3.37200 3.41561 3.58601 3.76043 3.94402 3.99388 4.03082 4.17058 4.25528 4.38665 4.39620 4.45548 4.56785 4.60697 4.62392 4.64972 4.78423 4.88218 4.90249 4.98167 5.01354 5.05419 5.21586 5.38516 5.46308 5.58104 6.22343 6.47832 6.54021 6.60373 6.63539 6.98462 7.17594 7.30618 8.84057 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.022749 B = 0.002526 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.549220 B =11081.043298 C =11579.265552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.092 3.908 3 N -0.593 5.593 4 C 0.226 3.774 5 C -0.537 4.537 6 H 0.029 0.971 7 C 0.010 3.990 8 N -0.946 5.946 9 Si 0.948 3.052 10 H -0.275 1.275 11 H -0.277 1.277 12 H -0.235 1.235 13 C 0.501 3.499 14 O -0.573 6.573 15 C 0.060 3.940 16 O -0.341 6.341 17 C 0.483 3.517 18 O -0.519 6.519 19 C -0.119 4.119 20 C 0.116 3.884 21 N -0.650 5.650 22 C 0.537 3.463 23 C -0.159 4.159 24 O -0.599 6.599 25 C 0.126 3.874 26 H 0.094 0.906 27 H 0.061 0.939 28 H 0.051 0.949 29 H 0.079 0.921 30 H 0.094 0.906 31 H 0.055 0.945 32 H 0.023 0.977 33 H 0.268 0.732 34 H 0.113 0.887 35 H 0.130 0.870 36 H 0.156 0.844 37 H 0.087 0.913 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.106 0.894 41 H 0.106 0.894 42 H 0.109 0.891 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.208 0.724 17.887 23.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.030 4.030 3 N -0.325 5.325 4 C 0.104 3.896 5 C -0.576 4.576 6 H 0.047 0.953 7 C -0.188 4.188 8 N -0.586 5.586 9 Si 0.770 3.230 10 H -0.201 1.201 11 H -0.203 1.203 12 H -0.158 1.158 13 C 0.288 3.712 14 O -0.452 6.452 15 C -0.016 4.016 16 O -0.256 6.256 17 C 0.325 3.675 18 O -0.408 6.408 19 C -0.139 4.139 20 C -0.007 4.007 21 N -0.386 5.386 22 C 0.330 3.670 23 C -0.217 4.217 24 O -0.480 6.480 25 C 0.004 3.996 26 H 0.113 0.887 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.097 0.903 30 H 0.112 0.888 31 H 0.073 0.927 32 H 0.041 0.959 33 H 0.077 0.923 34 H 0.131 0.869 35 H 0.147 0.853 36 H 0.173 0.827 37 H 0.105 0.895 38 H 0.118 0.882 39 H 0.120 0.880 40 H 0.124 0.876 41 H 0.125 0.875 42 H 0.126 0.874 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -14.824 0.838 18.500 23.721 hybrid contribution 0.505 0.015 -0.886 1.020 sum -14.319 0.853 17.614 22.716 Atomic orbital electron populations 1.22179 0.93606 1.03875 1.02374 1.21888 0.95933 0.80796 1.04360 1.47971 1.63901 1.15305 1.05356 1.19370 0.94946 0.93248 0.82005 1.21554 0.97081 1.32185 1.06782 0.95272 1.25866 0.96717 0.97213 0.98991 1.70051 1.17478 1.46517 1.24510 0.85715 0.80552 0.79041 0.77654 1.20090 1.20276 1.15787 1.20549 0.78064 0.86695 0.85854 1.90683 1.46746 1.20092 1.87717 1.22848 1.05031 0.91902 0.81865 1.86571 1.78709 1.45351 1.15006 1.23545 0.73400 0.86564 0.83944 1.90686 1.42991 1.20460 1.86629 1.22920 1.04586 0.98385 0.88008 1.22935 1.00514 0.88463 0.88740 1.49708 1.59950 1.21530 1.07377 1.21271 0.77671 0.88479 0.79585 1.21866 1.02679 0.90901 1.06290 1.90722 1.52258 1.69043 1.35968 1.23143 0.96862 1.02577 0.77010 0.88704 0.91953 0.92939 0.90255 0.88791 0.92728 0.95919 0.92283 0.86948 0.85278 0.82674 0.89467 0.88164 0.87998 0.87591 0.87512 0.87350 0.85657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.15 10.24 71.98 0.74 -2.41 16 2 C 0.09 2.44 5.93 86.38 0.51 2.95 16 3 N -0.59 -22.38 2.46 -826.16 -2.03 -24.41 16 4 C 0.23 10.45 4.23 85.63 0.36 10.82 16 5 C -0.54 -30.68 9.94 25.60 0.25 -30.43 16 6 H 0.03 1.87 8.06 -2.91 -0.02 1.84 16 7 C 0.01 0.59 5.47 84.65 0.46 1.05 16 8 N -0.95 -58.87 13.96 21.45 0.30 -58.57 16 9 Si 0.95 43.02 27.47 68.60 1.88 44.90 16 10 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 11 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 12 H -0.23 -9.40 6.54 99.48 0.65 -8.75 16 13 C 0.50 19.11 7.75 87.66 0.68 19.79 16 14 O -0.57 -27.63 16.08 15.77 0.25 -27.38 16 15 C 0.06 1.60 4.50 71.23 0.32 1.92 16 16 O -0.34 -9.11 9.75 -45.01 -0.44 -9.55 16 17 C 0.48 10.04 7.53 71.24 0.54 10.58 16 18 O -0.52 -12.42 15.70 21.95 0.34 -12.07 16 19 C -0.12 -1.70 4.61 -11.12 -0.05 -1.75 16 20 C 0.12 1.85 7.96 83.18 0.66 2.52 16 21 N -0.65 -9.94 3.69 -857.74 -3.16 -13.11 16 22 C 0.54 9.92 8.19 87.66 0.72 10.64 16 23 C -0.16 -1.36 10.36 71.24 0.74 -0.62 16 24 O -0.60 -17.24 17.88 -3.02 -0.05 -17.29 16 25 C 0.13 1.25 7.58 83.27 0.63 1.88 16 26 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.06 1.08 7.22 -2.39 -0.02 1.07 16 28 H 0.05 1.13 8.14 -2.39 -0.02 1.12 16 29 H 0.08 2.28 8.07 -2.39 -0.02 2.26 16 30 H 0.09 1.99 6.44 -2.39 -0.02 1.98 16 31 H 0.05 2.29 7.13 -2.39 -0.02 2.27 16 32 H 0.02 1.12 6.85 -2.38 -0.02 1.11 16 33 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 34 H 0.11 2.70 7.39 -2.39 -0.02 2.69 16 35 H 0.13 2.60 7.18 -2.39 -0.02 2.58 16 36 H 0.16 1.89 8.14 -2.38 -0.02 1.88 16 37 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.10 1.66 7.46 -2.38 -0.02 1.64 16 39 H 0.10 0.38 7.31 -2.39 -0.02 0.36 16 40 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.11 0.75 8.14 -2.38 -0.02 0.73 16 42 H 0.11 0.86 8.10 -2.39 -0.02 0.84 16 43 H 0.13 0.66 7.94 -2.39 -0.02 0.64 16 Total: -1.00 -85.99 368.33 4.62 -81.37 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: 0.96 Total: 9.17 kcal Atomic # 6 Polarization: 20.37 SS G_CDS: 6.56 Total: 26.93 kcal Atomic # 7 Polarization: -91.20 SS G_CDS: -4.89 Total: -96.09 kcal Atomic # 8 Polarization: -66.39 SS G_CDS: 0.11 Total: -66.29 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 1.88 Total: 44.90 kcal Total: -85.99 4.62 -81.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788158163.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.731 kcal (2) G-P(sol) polarization free energy of solvation -85.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds