Wall clock time and date at job start Fri Apr 10 2020 18:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08991 * 109.47341 * 2 1 4 4 O 1.45205 * 109.46814 * 120.00153 * 2 1 3 5 5 C 1.34234 * 116.99658 * 269.99466 * 4 2 1 6 6 O 1.20825 * 119.99876 * 0.02562 * 5 4 2 7 7 C 1.50700 * 119.99777 * 180.02562 * 5 4 2 8 8 H 1.08996 * 109.30172 * 320.00163 * 7 5 4 9 9 C 1.52921 * 109.29912 * 79.58663 * 7 5 4 10 10 C 1.53270 * 108.71252 * 171.25674 * 9 7 5 11 11 C 1.53070 * 108.24801 * 292.18565 * 10 9 7 12 12 C 1.50173 * 109.89187 * 48.96690 * 11 10 9 13 13 O 1.21283 * 118.24549 * 162.39650 * 12 11 10 14 14 N 1.33356 * 123.50664 * 342.41525 * 12 11 10 15 15 C 1.50698 * 109.47206 * 239.99460 * 2 1 3 16 16 O 1.21283 * 120.00638 * 245.00569 * 15 2 1 17 17 N 1.34779 * 119.99936 * 65.00181 * 15 2 1 18 18 C 1.46502 * 119.99726 * 0.02562 * 17 15 2 19 19 C 1.46496 * 120.00216 * 180.02562 * 17 15 2 20 20 C 1.50706 * 109.47106 * 269.99787 * 19 17 15 21 21 H 1.07999 * 119.99515 * 0.02562 * 20 19 17 22 22 C 1.37870 * 120.00176 * 180.02562 * 20 19 17 23 23 N 1.31520 * 119.99883 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00043 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47293 * 89.99746 * 24 22 20 26 26 H 1.48504 * 109.47104 * 209.99992 * 24 22 20 27 27 H 1.48495 * 109.47249 * 329.99739 * 24 22 20 28 28 H 1.09000 * 109.46858 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46953 * 300.00301 * 1 2 3 30 30 H 1.09005 * 109.46885 * 60.00093 * 1 2 3 31 31 H 1.08996 * 109.60231 * 290.82304 * 9 7 5 32 32 H 1.09005 * 109.60205 * 51.30865 * 9 7 5 33 33 H 1.08995 * 109.70602 * 172.53503 * 10 9 7 34 34 H 1.09002 * 109.84614 * 51.91571 * 10 9 7 35 35 H 1.08998 * 109.40230 * 288.83766 * 11 10 9 36 36 H 1.08999 * 109.32982 * 169.05104 * 11 10 9 37 37 H 0.96999 * 117.94382 * 182.19918 * 14 12 11 38 38 H 1.09003 * 109.47272 * 270.00147 * 18 17 15 39 39 H 1.09002 * 109.47278 * 30.00038 * 18 17 15 40 40 H 1.09000 * 109.47206 * 149.99940 * 18 17 15 41 41 H 1.09001 * 109.47001 * 150.00078 * 19 17 15 42 42 H 1.09000 * 109.47574 * 30.00294 * 19 17 15 43 43 H 0.97004 * 119.99507 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6845 1.1856 5 6 2.2172 0.0640 2.2812 6 8 1.9975 1.2517 2.2505 7 6 2.7193 -0.5770 3.5492 8 1 2.2299 -1.5416 3.6835 9 6 4.2304 -0.7871 3.4453 10 6 4.7601 -1.2326 4.8128 11 6 4.6196 -0.0599 5.7865 12 6 3.2332 0.5110 5.7020 13 8 2.8462 1.2152 6.6104 14 7 2.4048 0.2847 4.6818 15 6 2.0324 -0.7105 -1.2304 16 8 2.6529 -1.7468 -1.1214 17 7 1.7920 -0.1944 -2.4520 18 6 1.0428 1.0577 -2.5836 19 6 2.2798 -0.8853 -3.6481 20 6 3.6615 -0.3880 -3.9871 21 1 4.1295 0.3668 -3.3727 22 6 4.3280 -0.8967 -5.0815 23 7 3.7578 -1.8157 -5.8300 24 14 6.0409 -0.2809 -5.5013 25 1 7.0519 -1.1188 -4.8078 26 1 6.2511 -0.3645 -6.9690 27 1 6.1813 1.1303 -5.0608 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 4.4423 -1.5589 2.7054 32 1 4.7100 0.1465 3.1509 33 1 5.8095 -1.5142 4.7265 34 1 4.1810 -2.0820 5.1752 35 1 5.3453 0.7121 5.5306 36 1 4.8059 -0.4097 6.8019 37 1 1.5383 0.7206 4.6946 38 1 -0.0214 0.8373 -2.6677 39 1 1.2167 1.6793 -1.7053 40 1 1.3756 1.5882 -3.4758 41 1 1.6072 -0.6862 -4.4824 42 1 2.3160 -1.9581 -3.4587 43 1 4.2269 -2.1738 -6.5998 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000800245510.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:36 Heat of formation + Delta-G solvation = -154.845563 kcal Electronic energy + Delta-G solvation = -26466.259364 eV Core-core repulsion = 22511.824642 eV Total energy + Delta-G solvation = -3954.434723 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.35624 -40.22159 -39.02361 -37.01891 -36.36130 -35.00812 -33.44685 -32.97447 -31.79642 -30.34346 -27.78401 -26.35766 -26.01864 -24.43067 -23.25748 -22.75722 -21.19448 -19.57994 -19.01362 -18.26379 -17.74906 -16.98079 -16.60769 -16.21298 -16.14803 -16.08020 -15.51705 -15.02427 -14.67794 -14.50309 -14.38512 -14.10307 -13.94800 -13.59713 -13.41368 -12.99044 -12.50936 -12.41913 -12.25439 -12.19047 -12.05911 -11.75081 -11.53480 -11.49682 -11.44391 -11.26831 -10.98010 -10.86494 -10.81236 -10.64391 -10.22890 -10.13362 -9.71951 -9.57257 -9.00980 -8.50465 -7.81239 -6.11723 -4.17022 1.82984 1.98442 2.39734 2.94247 3.15779 3.26913 3.33122 3.35764 3.70987 4.12001 4.14180 4.27759 4.34724 4.38648 4.54966 4.72361 4.76821 4.87587 4.95855 4.97874 5.23039 5.25271 5.31999 5.41340 5.44963 5.52045 5.54228 5.55855 5.71569 5.77247 5.89600 6.14458 6.20189 6.34007 6.87626 6.90210 7.31228 7.37198 7.46039 7.83432 7.84006 8.13364 8.20274 8.76126 8.91353 9.48342 10.96424 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.017918 B = 0.003146 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.341646 B = 8896.997041 C = 9831.068164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.069 3.931 3 H 0.106 0.894 4 O -0.319 6.319 5 C 0.450 3.550 6 O -0.498 6.498 7 C 0.157 3.843 8 H 0.117 0.883 9 C -0.132 4.132 10 C -0.120 4.120 11 C -0.139 4.139 12 C 0.528 3.472 13 O -0.552 6.552 14 N -0.704 5.704 15 C 0.509 3.491 16 O -0.519 6.519 17 N -0.594 5.594 18 C 0.075 3.925 19 C 0.247 3.753 20 C -0.530 4.530 21 H 0.058 0.942 22 C 0.062 3.938 23 N -0.894 5.894 24 Si 0.899 3.101 25 H -0.279 1.279 26 H -0.285 1.285 27 H -0.274 1.274 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.090 0.910 31 H 0.106 0.894 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.405 0.595 38 H 0.051 0.949 39 H 0.058 0.942 40 H 0.079 0.921 41 H 0.037 0.963 42 H 0.046 0.954 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.738 2.294 17.914 18.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.011 3.989 3 H 0.124 0.876 4 O -0.233 6.233 5 C 0.290 3.710 6 O -0.385 6.385 7 C 0.050 3.950 8 H 0.135 0.865 9 C -0.170 4.170 10 C -0.158 4.158 11 C -0.178 4.178 12 C 0.316 3.684 13 O -0.430 6.430 14 N -0.358 5.358 15 C 0.293 3.707 16 O -0.395 6.395 17 N -0.328 5.328 18 C -0.069 4.069 19 C 0.128 3.872 20 C -0.569 4.569 21 H 0.076 0.924 22 C -0.140 4.140 23 N -0.532 5.532 24 Si 0.727 3.273 25 H -0.205 1.205 26 H -0.211 1.211 27 H -0.199 1.199 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.109 0.891 31 H 0.125 0.875 32 H 0.101 0.899 33 H 0.107 0.893 34 H 0.097 0.903 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.241 0.759 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.098 0.902 41 H 0.054 0.946 42 H 0.064 0.936 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.430 2.232 18.199 18.654 hybrid contribution 0.488 0.763 -0.623 1.100 sum -2.943 2.995 17.576 18.071 Atomic orbital electron populations 1.22287 0.92176 1.04159 1.04148 1.22707 0.95851 0.97672 0.82675 0.87598 1.86599 1.76108 1.41189 1.19416 1.23884 0.74804 0.86191 0.86076 1.90693 1.47478 1.16291 1.84053 1.20463 0.98820 0.94224 0.81530 0.86506 1.21934 0.90508 1.04691 0.99890 1.21664 1.03272 0.97635 0.93230 1.21732 0.93682 0.99647 1.02777 1.20201 0.87400 0.79994 0.80852 1.90781 1.76002 1.39027 1.37156 1.45336 1.20359 1.49750 1.20372 1.19718 0.81263 0.85960 0.83790 1.90707 1.39672 1.23350 1.85734 1.48078 1.53938 1.23883 1.06892 1.21858 0.95407 0.86703 1.02884 1.19367 0.94357 0.93787 0.79686 1.21412 1.00990 1.23156 1.11346 0.92424 1.24931 0.98240 0.94867 0.95973 1.69931 1.38050 1.28021 1.17233 0.86482 0.84261 0.79172 0.77425 1.20474 1.21069 1.19906 0.90803 0.91327 0.89128 0.87526 0.89927 0.89326 0.90329 0.87797 0.87705 0.75866 0.93042 0.92381 0.90202 0.94551 0.93595 0.92606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.03 9.27 37.16 0.34 -1.68 16 2 C 0.07 1.06 2.16 -27.88 -0.06 1.00 16 3 H 0.11 1.58 6.14 -51.93 -0.32 1.26 16 4 O -0.32 -4.71 9.42 -45.90 -0.43 -5.14 16 5 C 0.45 5.64 7.08 36.01 0.26 5.89 16 6 O -0.50 -7.27 15.61 -18.75 -0.29 -7.56 16 7 C 0.16 1.41 3.57 -69.53 -0.25 1.16 16 8 H 0.12 0.79 8.14 -51.93 -0.42 0.37 16 9 C -0.13 -1.04 5.27 -26.63 -0.14 -1.18 16 10 C -0.12 -0.68 6.04 -26.56 -0.16 -0.84 16 11 C -0.14 -0.97 6.02 -28.10 -0.17 -1.14 16 12 C 0.53 5.63 7.71 -11.87 -0.09 5.54 16 13 O -0.55 -8.12 17.78 5.56 0.10 -8.03 16 14 N -0.70 -6.86 4.79 -55.99 -0.27 -7.13 16 15 C 0.51 10.29 7.10 -10.99 -0.08 10.21 16 16 O -0.52 -12.74 16.09 -14.05 -0.23 -12.96 16 17 N -0.59 -12.05 2.86 -182.95 -0.52 -12.57 16 18 C 0.08 1.11 8.92 59.85 0.53 1.65 16 19 C 0.25 6.22 5.16 -5.19 -0.03 6.19 16 20 C -0.53 -14.65 9.39 -34.44 -0.32 -14.97 16 21 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 22 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 23 N -0.89 -25.92 13.29 55.43 0.74 -25.18 16 24 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 27 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.09 0.96 5.12 -51.93 -0.27 0.70 16 31 H 0.11 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.08 0.72 8.10 -51.93 -0.42 0.30 16 33 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.08 0.37 8.13 -51.93 -0.42 -0.05 16 35 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.40 4.07 8.45 -40.82 -0.35 3.72 16 38 H 0.05 0.63 7.02 -51.93 -0.36 0.26 16 39 H 0.06 0.72 6.08 -51.93 -0.32 0.41 16 40 H 0.08 1.22 8.07 -51.93 -0.42 0.80 16 41 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 42 H 0.05 1.30 7.42 -51.93 -0.39 0.92 16 43 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 359.58 15.07 5.42 5.42 Total: -1.00 -36.00 359.58 -6.95 -42.95 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -6.18 Total: 0.37 kcal Atomic # 6 Polarization: 13.73 SS G_CDS: -0.26 Total: 13.47 kcal Atomic # 7 Polarization: -44.83 SS G_CDS: -0.05 Total: -44.88 kcal Atomic # 8 Polarization: -32.84 SS G_CDS: -0.85 Total: -33.69 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -36.00 -6.95 -42.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800245510.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.892 kcal (2) G-P(sol) polarization free energy of solvation -36.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds