Wall clock time and date at job start Fri Apr 10 2020 18:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08991 * 109.47341 * 2 1 4 4 O 1.45205 * 109.46814 * 120.00153 * 2 1 3 5 5 C 1.34234 * 116.99658 * 269.99466 * 4 2 1 6 6 O 1.20825 * 119.99876 * 0.02562 * 5 4 2 7 7 C 1.50700 * 119.99777 * 180.02562 * 5 4 2 8 8 H 1.08996 * 109.30172 * 320.00163 * 7 5 4 9 9 C 1.52921 * 109.29912 * 79.58663 * 7 5 4 10 10 C 1.53270 * 108.71252 * 171.25674 * 9 7 5 11 11 C 1.53070 * 108.24801 * 292.18565 * 10 9 7 12 12 C 1.50173 * 109.89187 * 48.96690 * 11 10 9 13 13 O 1.21283 * 118.24549 * 162.39650 * 12 11 10 14 14 N 1.33356 * 123.50664 * 342.41525 * 12 11 10 15 15 C 1.50698 * 109.47206 * 239.99460 * 2 1 3 16 16 O 1.21283 * 120.00638 * 245.00569 * 15 2 1 17 17 N 1.34779 * 119.99936 * 65.00181 * 15 2 1 18 18 C 1.46502 * 119.99726 * 0.02562 * 17 15 2 19 19 C 1.46496 * 120.00216 * 180.02562 * 17 15 2 20 20 C 1.50706 * 109.47106 * 269.99787 * 19 17 15 21 21 H 1.07999 * 119.99515 * 0.02562 * 20 19 17 22 22 C 1.37870 * 120.00176 * 180.02562 * 20 19 17 23 23 N 1.31520 * 119.99883 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00043 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47293 * 89.99746 * 24 22 20 26 26 H 1.48504 * 109.47104 * 209.99992 * 24 22 20 27 27 H 1.48495 * 109.47249 * 329.99739 * 24 22 20 28 28 H 1.09000 * 109.46858 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46953 * 300.00301 * 1 2 3 30 30 H 1.09005 * 109.46885 * 60.00093 * 1 2 3 31 31 H 1.08996 * 109.60231 * 290.82304 * 9 7 5 32 32 H 1.09005 * 109.60205 * 51.30865 * 9 7 5 33 33 H 1.08995 * 109.70602 * 172.53503 * 10 9 7 34 34 H 1.09002 * 109.84614 * 51.91571 * 10 9 7 35 35 H 1.08998 * 109.40230 * 288.83766 * 11 10 9 36 36 H 1.08999 * 109.32982 * 169.05104 * 11 10 9 37 37 H 0.96999 * 117.94382 * 182.19918 * 14 12 11 38 38 H 1.09003 * 109.47272 * 270.00147 * 18 17 15 39 39 H 1.09002 * 109.47278 * 30.00038 * 18 17 15 40 40 H 1.09000 * 109.47206 * 149.99940 * 18 17 15 41 41 H 1.09001 * 109.47001 * 150.00078 * 19 17 15 42 42 H 1.09000 * 109.47574 * 30.00294 * 19 17 15 43 43 H 0.97004 * 119.99507 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6845 1.1856 5 6 2.2172 0.0640 2.2812 6 8 1.9975 1.2517 2.2505 7 6 2.7193 -0.5770 3.5492 8 1 2.2299 -1.5416 3.6835 9 6 4.2304 -0.7871 3.4453 10 6 4.7601 -1.2326 4.8128 11 6 4.6196 -0.0599 5.7865 12 6 3.2332 0.5110 5.7020 13 8 2.8462 1.2152 6.6104 14 7 2.4048 0.2847 4.6818 15 6 2.0324 -0.7105 -1.2304 16 8 2.6529 -1.7468 -1.1214 17 7 1.7920 -0.1944 -2.4520 18 6 1.0428 1.0577 -2.5836 19 6 2.2798 -0.8853 -3.6481 20 6 3.6615 -0.3880 -3.9871 21 1 4.1295 0.3668 -3.3727 22 6 4.3280 -0.8967 -5.0815 23 7 3.7578 -1.8157 -5.8300 24 14 6.0409 -0.2809 -5.5013 25 1 7.0519 -1.1188 -4.8078 26 1 6.2511 -0.3645 -6.9690 27 1 6.1813 1.1303 -5.0608 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 4.4423 -1.5589 2.7054 32 1 4.7100 0.1465 3.1509 33 1 5.8095 -1.5142 4.7265 34 1 4.1810 -2.0820 5.1752 35 1 5.3453 0.7121 5.5306 36 1 4.8059 -0.4097 6.8019 37 1 1.5383 0.7206 4.6946 38 1 -0.0214 0.8373 -2.6677 39 1 1.2167 1.6793 -1.7053 40 1 1.3756 1.5882 -3.4758 41 1 1.6072 -0.6862 -4.4824 42 1 2.3160 -1.9581 -3.4587 43 1 4.2269 -2.1738 -6.5998 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000800245510.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:35 Heat of formation + Delta-G solvation = -179.987055 kcal Electronic energy + Delta-G solvation = -26467.349581 eV Core-core repulsion = 22511.824642 eV Total energy + Delta-G solvation = -3955.524940 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.34351 -41.25666 -40.43770 -38.05507 -37.33562 -36.70392 -34.91063 -34.09307 -33.13769 -31.15960 -29.60119 -27.68933 -26.88416 -25.90553 -24.34946 -23.88394 -22.33800 -20.49302 -20.21541 -19.33378 -18.70880 -18.67223 -18.09935 -17.45498 -17.32246 -17.11452 -16.78532 -16.45168 -16.04199 -15.76882 -15.23559 -14.97657 -14.81086 -14.65931 -14.55311 -14.30749 -14.12052 -13.69862 -13.54281 -13.34431 -13.14325 -13.06304 -12.82706 -12.74330 -12.63688 -12.53766 -12.21119 -12.09510 -12.00268 -11.93759 -11.78499 -11.70901 -10.97578 -10.65562 -10.63460 -10.40362 -9.52659 -8.24129 -6.38725 0.83857 0.97786 1.37493 1.39713 1.49174 1.54821 1.61308 2.10491 2.30656 2.42155 3.06175 3.28130 3.37852 3.48056 3.49054 3.71406 3.78670 3.81655 3.96565 4.16629 4.31242 4.46364 4.50339 4.59235 4.66085 4.68219 4.79341 4.85474 4.94287 4.94652 5.04906 5.08188 5.15723 5.21938 5.23310 5.50186 5.54447 5.77017 6.02794 6.09990 6.38964 6.59661 6.70143 7.01964 7.19412 7.35248 8.83157 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.017918 B = 0.003146 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.341646 B = 8896.997041 C = 9831.068164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.079 3.921 3 H 0.114 0.886 4 O -0.332 6.332 5 C 0.452 3.548 6 O -0.520 6.520 7 C 0.162 3.838 8 H 0.146 0.854 9 C -0.134 4.134 10 C -0.110 4.110 11 C -0.134 4.134 12 C 0.524 3.476 13 O -0.599 6.599 14 N -0.701 5.701 15 C 0.500 3.500 16 O -0.574 6.574 17 N -0.599 5.599 18 C 0.068 3.932 19 C 0.260 3.740 20 C -0.547 4.547 21 H 0.052 0.948 22 C 0.011 3.989 23 N -0.926 5.926 24 Si 0.966 3.034 25 H -0.279 1.279 26 H -0.275 1.275 27 H -0.264 1.264 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.071 0.929 33 H 0.109 0.891 34 H 0.093 0.907 35 H 0.111 0.889 36 H 0.119 0.881 37 H 0.401 0.599 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.073 0.927 41 H 0.032 0.968 42 H 0.003 0.997 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.350 3.022 18.886 19.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.021 3.979 3 H 0.131 0.869 4 O -0.247 6.247 5 C 0.294 3.706 6 O -0.408 6.408 7 C 0.056 3.944 8 H 0.163 0.837 9 C -0.172 4.172 10 C -0.147 4.147 11 C -0.174 4.174 12 C 0.313 3.687 13 O -0.480 6.480 14 N -0.353 5.353 15 C 0.287 3.713 16 O -0.454 6.454 17 N -0.332 5.332 18 C -0.074 4.074 19 C 0.139 3.861 20 C -0.585 4.585 21 H 0.071 0.929 22 C -0.189 4.189 23 N -0.565 5.565 24 Si 0.790 3.210 25 H -0.205 1.205 26 H -0.200 1.200 27 H -0.188 1.188 28 H 0.090 0.910 29 H 0.106 0.894 30 H 0.125 0.875 31 H 0.126 0.874 32 H 0.090 0.910 33 H 0.127 0.873 34 H 0.111 0.889 35 H 0.129 0.871 36 H 0.138 0.862 37 H 0.237 0.763 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.092 0.908 41 H 0.050 0.950 42 H 0.021 0.979 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.072 2.988 19.162 19.636 hybrid contribution 0.320 0.539 -0.937 1.127 sum -2.752 3.526 18.226 18.766 Atomic orbital electron populations 1.22300 0.89204 1.04627 1.05884 1.22562 0.97842 0.96652 0.80860 0.86877 1.86607 1.76493 1.41843 1.19744 1.24569 0.73879 0.85939 0.86221 1.90681 1.48538 1.17263 1.84333 1.20704 0.99869 0.94546 0.79330 0.83665 1.21995 0.89405 1.04301 1.01495 1.21665 1.04671 0.97280 0.91115 1.21790 0.91155 1.00271 1.04146 1.20894 0.88475 0.79197 0.80089 1.90758 1.77102 1.41266 1.38908 1.45392 1.20150 1.49500 1.20275 1.20584 0.80192 0.85463 0.85046 1.90668 1.42121 1.25889 1.86695 1.48048 1.54093 1.25268 1.05752 1.22186 0.96548 0.84595 1.04022 1.18850 0.93826 0.91892 0.81519 1.21688 1.02180 1.23161 1.11483 0.92945 1.25815 1.02293 0.94935 0.95840 1.70040 1.39764 1.29019 1.17717 0.85444 0.79048 0.78937 0.77570 1.20480 1.19961 1.18802 0.91021 0.89378 0.87523 0.87437 0.91024 0.87285 0.88866 0.87078 0.86245 0.76285 0.89704 0.89549 0.90771 0.94982 0.97851 0.92294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.50 9.27 71.98 0.67 -2.83 16 2 C 0.08 2.33 2.16 29.85 0.06 2.39 16 3 H 0.11 3.18 6.14 -2.39 -0.01 3.16 16 4 O -0.33 -9.51 9.42 -45.11 -0.42 -9.93 16 5 C 0.45 10.75 7.08 71.24 0.50 11.25 16 6 O -0.52 -14.52 15.61 21.97 0.34 -14.18 16 7 C 0.16 2.62 3.57 44.36 0.16 2.78 16 8 H 0.15 1.59 8.14 -2.39 -0.02 1.57 16 9 C -0.13 -1.85 5.27 30.66 0.16 -1.68 16 10 C -0.11 -0.91 6.04 30.71 0.19 -0.73 16 11 C -0.13 -1.58 6.02 29.71 0.18 -1.41 16 12 C 0.52 10.61 7.71 87.71 0.68 11.28 16 13 O -0.60 -17.54 17.78 -3.04 -0.05 -17.59 16 14 N -0.70 -12.81 4.79 -450.24 -2.16 -14.96 16 15 C 0.50 20.38 7.10 87.66 0.62 21.00 16 16 O -0.57 -29.15 16.09 15.71 0.25 -28.90 16 17 N -0.60 -24.34 2.86 -851.11 -2.43 -26.77 16 18 C 0.07 1.89 8.92 127.77 1.14 3.03 16 19 C 0.26 13.52 5.16 85.64 0.44 13.97 16 20 C -0.55 -30.74 9.39 25.60 0.24 -30.50 16 21 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 22 C 0.01 0.60 5.46 84.65 0.46 1.06 16 23 N -0.93 -54.63 13.29 21.45 0.28 -54.34 16 24 Si 0.97 43.86 29.54 68.60 2.03 45.89 16 25 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 26 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 27 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 28 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.11 1.92 5.12 -2.38 -0.01 1.90 16 31 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.07 1.15 8.10 -2.38 -0.02 1.13 16 33 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.09 0.56 8.13 -2.39 -0.02 0.54 16 35 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.40 7.78 8.45 -92.71 -0.78 6.99 16 38 H 0.08 1.81 7.02 -2.39 -0.02 1.80 16 39 H 0.09 1.92 6.08 -2.39 -0.01 1.90 16 40 H 0.07 2.16 8.07 -2.39 -0.02 2.14 16 41 H 0.03 1.67 8.07 -2.39 -0.02 1.65 16 42 H 0.00 0.20 7.42 -2.39 -0.02 0.18 16 43 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -81.29 359.58 3.60 -77.69 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: 0.25 Total: 13.49 kcal Atomic # 6 Polarization: 24.12 SS G_CDS: 5.50 Total: 29.62 kcal Atomic # 7 Polarization: -91.78 SS G_CDS: -4.30 Total: -96.08 kcal Atomic # 8 Polarization: -70.72 SS G_CDS: 0.12 Total: -70.60 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -81.29 3.60 -77.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800245510.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.301 kcal (2) G-P(sol) polarization free energy of solvation -81.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds