Wall clock time and date at job start Fri Apr 10 2020 18:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34222 * 117.00265 * 2 1 4 4 O 1.20831 * 119.99852 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00370 * 180.02562 * 3 2 1 6 6 H 1.08999 * 110.46797 * 53.82063 * 5 3 2 7 7 C 1.54093 * 110.81835 * 291.21598 * 5 3 2 8 8 N 1.47094 * 103.77673 * 241.54479 * 7 5 3 9 9 C 1.46497 * 125.55966 * 179.97438 * 8 7 5 10 10 N 1.46901 * 109.47052 * 269.71658 * 9 8 7 11 11 C 1.46843 * 111.00428 * 278.95328 * 10 9 8 12 12 C 1.53038 * 109.52803 * 174.16203 * 11 10 9 13 13 C 1.53121 * 109.27699 * 59.17743 * 12 11 10 14 14 C 1.53114 * 109.16368 * 302.35015 * 13 12 11 15 15 H 1.09001 * 109.50240 * 297.67651 * 14 13 12 16 16 C 1.50694 * 109.50422 * 177.59401 * 14 13 12 17 17 H 1.08000 * 120.00563 * 239.99799 * 16 14 13 18 18 C 1.37885 * 119.99902 * 59.99962 * 16 14 13 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 14 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.46985 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47276 * 299.99832 * 20 18 16 23 23 H 1.48498 * 109.47150 * 60.00043 * 20 18 16 24 24 C 1.46853 * 110.99810 * 154.74598 * 10 9 8 25 25 C 1.34003 * 108.88027 * 359.66431 * 8 7 5 26 26 O 1.21515 * 123.07170 * 180.20690 * 25 8 7 27 27 O 1.33777 * 113.85890 * 0.22429 * 25 8 7 28 28 H 1.09002 * 109.46745 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47069 * 299.99942 * 1 2 3 30 30 H 1.08996 * 109.46690 * 60.00357 * 1 2 3 31 31 H 1.08997 * 110.66151 * 122.92286 * 7 5 3 32 32 H 1.08999 * 110.47140 * 0.07159 * 7 5 3 33 33 H 1.08996 * 109.47297 * 149.72197 * 9 8 7 34 34 H 1.08994 * 109.47224 * 29.71512 * 9 8 7 35 35 H 1.08999 * 109.46223 * 54.14056 * 11 10 9 36 36 H 1.09000 * 109.46085 * 294.18174 * 11 10 9 37 37 H 1.08997 * 109.49793 * 299.24033 * 12 11 10 38 38 H 1.08998 * 109.53821 * 179.14541 * 12 11 10 39 39 H 1.09003 * 109.51869 * 182.44240 * 13 12 11 40 40 H 1.09003 * 109.51910 * 62.25213 * 13 12 11 41 41 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 42 42 H 1.08995 * 109.46140 * 65.82542 * 24 10 9 43 43 H 1.08998 * 109.46036 * 305.85324 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9782 0.6929 -0.8251 7 6 4.1411 0.7827 1.3418 8 7 4.8413 1.9608 1.8760 9 6 5.5650 2.0174 3.1485 10 7 4.6480 2.4414 4.2149 11 6 4.4804 3.9002 4.2157 12 6 3.4121 4.2918 5.2392 13 6 3.8403 3.8077 6.6273 14 6 4.0550 2.2922 6.5870 15 1 3.1156 1.7981 6.3390 16 6 4.5337 1.8159 7.9341 17 1 5.4897 1.3214 8.0237 18 6 3.7513 2.0114 9.0525 19 7 2.5874 2.6140 8.9436 20 14 4.3445 1.4202 10.7223 21 1 3.3279 1.7492 11.7536 22 1 4.5519 -0.0496 10.6820 23 1 5.6255 2.0919 11.0587 24 6 5.1047 1.9587 5.5245 25 6 4.7151 2.9719 1.0057 26 8 5.2008 4.0703 1.1903 27 8 4.0051 2.6616 -0.0849 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 4.8398 -0.0387 1.1830 32 1 3.3372 0.4785 2.0121 33 1 6.3846 2.7315 3.0689 34 1 5.9642 1.0308 3.3836 35 1 4.1718 4.2309 3.2240 36 1 5.4261 4.3743 4.4784 37 1 2.4628 3.8292 4.9693 38 1 3.2983 5.3758 5.2508 39 1 3.0621 4.0463 7.3523 40 1 4.7698 4.2997 6.9139 41 1 2.0368 2.7512 9.7304 42 1 6.0474 2.4419 5.7810 43 1 5.2494 0.8791 5.4833 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853525525.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:34 Heat of formation + Delta-G solvation = -160.386846 kcal Electronic energy + Delta-G solvation = -27098.341603 eV Core-core repulsion = 23143.666592 eV Total energy + Delta-G solvation = -3954.675011 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.04315 -41.36636 -39.85937 -38.47789 -37.61579 -36.74914 -35.09701 -33.27560 -31.86215 -31.61753 -28.59131 -27.44911 -26.93008 -25.49473 -23.96787 -23.28433 -22.75681 -21.75426 -20.43702 -19.47555 -18.86272 -18.36444 -18.17980 -18.13684 -17.43526 -16.87031 -16.71751 -16.22511 -16.16829 -15.51586 -15.22751 -15.20916 -14.90905 -14.57848 -14.52247 -14.40988 -14.21776 -13.85296 -13.54115 -13.46051 -13.08313 -12.83607 -12.77684 -12.69911 -12.53733 -12.51480 -11.97812 -11.91195 -11.82280 -11.71777 -11.56098 -11.42841 -11.03766 -10.68404 -10.37641 -10.19200 -9.30526 -8.05397 -6.19914 0.78880 0.95166 1.44023 1.45657 1.46449 1.53571 1.55865 2.40921 2.46113 2.93957 3.05043 3.22376 3.34233 3.64186 3.86203 4.08716 4.15468 4.27404 4.28832 4.31301 4.39833 4.41426 4.50150 4.57711 4.60123 4.70341 4.72683 4.84251 4.91905 5.01625 5.13868 5.14632 5.21328 5.31117 5.48652 5.64966 5.90394 6.03320 6.11776 6.18289 6.19544 6.43234 6.45899 6.81088 6.93555 7.48680 8.99172 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.016751 B = 0.003541 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.178490 B = 7905.567903 C = 8635.229822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.340 6.340 3 C 0.454 3.546 4 O -0.528 6.528 5 C 0.083 3.917 6 H 0.212 0.788 7 C 0.083 3.917 8 N -0.611 5.611 9 C 0.307 3.693 10 N -0.564 5.564 11 C 0.075 3.925 12 C -0.110 4.110 13 C -0.102 4.102 14 C 0.053 3.947 15 H -0.003 1.003 16 C -0.532 4.532 17 H 0.061 0.939 18 C 0.013 3.987 19 N -0.919 5.919 20 Si 0.955 3.045 21 H -0.290 1.290 22 H -0.267 1.267 23 H -0.272 1.272 24 C 0.087 3.913 25 C 0.640 3.360 26 O -0.558 6.558 27 O -0.321 6.321 28 H 0.143 0.857 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.168 0.832 32 H 0.096 0.904 33 H 0.063 0.937 34 H 0.139 0.861 35 H 0.058 0.942 36 H 0.028 0.972 37 H 0.042 0.958 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.025 0.975 41 H 0.259 0.741 42 H 0.027 0.973 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.328 -11.079 -19.321 22.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.255 6.255 3 C 0.297 3.703 4 O -0.417 6.417 5 C 0.027 3.973 6 H 0.229 0.771 7 C -0.039 4.039 8 N -0.358 5.358 9 C 0.098 3.902 10 N -0.291 5.291 11 C -0.053 4.053 12 C -0.147 4.147 13 C -0.140 4.140 14 C 0.035 3.965 15 H 0.015 0.985 16 C -0.570 4.570 17 H 0.079 0.921 18 C -0.186 4.186 19 N -0.559 5.559 20 Si 0.780 3.220 21 H -0.216 1.216 22 H -0.192 1.192 23 H -0.198 1.198 24 C -0.040 4.040 25 C 0.394 3.606 26 O -0.445 6.445 27 O -0.231 6.231 28 H 0.161 0.839 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.186 0.814 32 H 0.115 0.885 33 H 0.081 0.919 34 H 0.157 0.843 35 H 0.076 0.924 36 H 0.046 0.954 37 H 0.061 0.939 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.044 0.956 41 H 0.068 0.932 42 H 0.045 0.955 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.687 -10.254 -19.399 22.007 hybrid contribution 0.032 0.817 1.338 1.568 sum 1.720 -9.437 -18.061 20.451 Atomic orbital electron populations 1.23648 0.74035 1.06313 1.02456 1.86447 1.25251 1.30573 1.83279 1.23811 0.92048 0.82156 0.72314 1.90767 1.67542 1.38021 1.45321 1.23712 0.87895 0.80720 1.05000 0.77139 1.23091 0.99742 0.89971 0.91102 1.48326 1.55595 1.11799 1.20113 1.21893 0.87629 1.03741 0.76941 1.61643 1.49939 1.12033 1.05524 1.21905 0.97425 0.87617 0.98311 1.21567 0.97943 0.99251 0.95987 1.21474 0.99351 0.98502 0.94703 1.18581 0.93614 0.92143 0.92206 0.98458 1.21498 1.04441 1.37820 0.93278 0.92102 1.25747 0.94955 0.95294 1.02606 1.70051 1.12131 1.43373 1.30304 0.85665 0.77823 0.79128 0.79337 1.21570 1.19169 1.19764 1.21993 0.96446 0.99520 0.86021 1.18676 0.77903 0.84912 0.79143 1.91011 1.53210 1.23141 1.77159 1.87344 1.65291 1.30840 1.39597 0.83946 0.92823 0.91500 0.81437 0.88544 0.91883 0.84299 0.92352 0.95373 0.93900 0.92422 0.92473 0.95622 0.93240 0.95482 0.89869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.56 113.37 1.20 1.56 16 2 O -0.34 -5.22 10.56 -51.34 -0.54 -5.77 16 3 C 0.45 9.47 7.15 71.24 0.51 9.98 16 4 O -0.53 -16.51 16.31 28.12 0.46 -16.05 16 5 C 0.08 1.26 4.38 30.22 0.13 1.39 16 6 H 0.21 0.72 8.14 -2.39 -0.02 0.70 16 7 C 0.08 1.12 7.34 86.64 0.64 1.76 16 8 N -0.61 -14.44 3.17 -962.59 -3.05 -17.49 16 9 C 0.31 7.73 5.85 170.81 1.00 8.73 16 10 N -0.56 -19.47 4.75 -908.73 -4.32 -23.79 16 11 C 0.08 2.92 5.28 86.33 0.46 3.37 16 12 C -0.11 -4.71 6.09 30.65 0.19 -4.53 16 13 C -0.10 -5.02 5.02 30.67 0.15 -4.87 16 14 C 0.05 2.63 2.26 -11.49 -0.03 2.60 16 15 H 0.00 -0.16 8.14 -2.39 -0.02 -0.17 16 16 C -0.53 -28.24 8.56 25.60 0.22 -28.02 16 17 H 0.06 3.07 7.74 -2.91 -0.02 3.05 16 18 C 0.01 0.68 5.30 84.66 0.45 1.13 16 19 N -0.92 -53.30 11.35 21.45 0.24 -53.05 16 20 Si 0.95 42.67 29.54 68.60 2.03 44.70 16 21 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 22 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 23 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 24 C 0.09 3.32 4.62 86.33 0.40 3.72 16 25 C 0.64 19.68 8.18 129.91 1.06 20.74 16 26 O -0.56 -21.88 16.05 19.64 0.32 -21.56 16 27 O -0.32 -8.62 10.37 -41.07 -0.43 -9.05 16 28 H 0.14 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.05 0.86 8.13 -2.39 -0.02 0.84 16 30 H 0.07 0.84 8.13 -2.39 -0.02 0.82 16 31 H 0.17 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.10 1.52 7.73 -2.39 -0.02 1.51 16 33 H 0.06 1.69 7.70 -2.39 -0.02 1.67 16 34 H 0.14 2.40 7.70 -2.39 -0.02 2.38 16 35 H 0.06 2.37 5.79 -2.39 -0.01 2.36 16 36 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.06 3.19 6.15 -2.39 -0.01 3.18 16 40 H 0.02 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 42 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.08 2.82 7.91 -2.39 -0.02 2.80 16 Total: -1.00 -79.18 352.62 2.09 -77.09 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: 1.01 Total: 7.40 kcal Atomic # 6 Polarization: 11.19 SS G_CDS: 6.37 Total: 17.56 kcal Atomic # 7 Polarization: -87.21 SS G_CDS: -7.13 Total: -94.33 kcal Atomic # 8 Polarization: -52.23 SS G_CDS: -0.19 Total: -52.42 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -79.18 2.09 -77.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853525525.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.297 kcal (2) G-P(sol) polarization free energy of solvation -79.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds