Wall clock time and date at job start Fri Apr 10 2020 18:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47367 * 2 1 4 4 C 1.50705 * 109.47134 * 239.99541 * 2 1 3 5 5 H 1.08003 * 120.00513 * 237.00864 * 4 2 1 6 6 C 1.37879 * 119.99484 * 57.01327 * 4 2 1 7 7 N 1.31507 * 120.00460 * 5.53620 * 6 4 2 8 8 Si 1.86802 * 119.99892 * 185.54058 * 6 4 2 9 9 H 1.48502 * 109.47245 * 84.99742 * 8 6 4 10 10 H 1.48493 * 109.47212 * 204.99726 * 8 6 4 11 11 H 1.48501 * 109.47042 * 324.99849 * 8 6 4 12 12 C 1.52999 * 109.47132 * 120.00097 * 2 1 3 13 13 N 1.46500 * 109.47259 * 299.99884 * 12 2 1 14 14 C 1.34777 * 120.00452 * 179.97438 * 13 12 2 15 15 O 1.21582 * 119.99574 * 359.97438 * 14 13 12 16 16 N 1.34771 * 120.00172 * 179.97438 * 14 13 12 17 17 N 1.40097 * 119.99975 * 0.02562 * 16 14 13 18 18 C 1.34779 * 120.00431 * 179.72286 * 17 16 14 19 19 O 1.21283 * 119.99148 * 0.27835 * 18 17 16 20 20 C 1.50693 * 120.00753 * 180.27431 * 18 17 16 21 21 H 1.09008 * 110.21259 * 41.92857 * 20 18 17 22 22 C 1.54479 * 110.24730 * 280.00623 * 20 18 17 23 23 C 1.54625 * 101.76421 * 215.58066 * 22 20 18 24 24 C 1.51283 * 104.19695 * 24.79378 * 23 22 20 25 25 O 1.21279 * 124.94317 * 163.74211 * 24 23 22 26 26 N 1.34418 * 110.11341 * 343.74923 * 24 23 22 27 27 H 1.08997 * 109.47625 * 293.93567 * 1 2 3 28 28 H 1.08999 * 109.47214 * 53.93447 * 1 2 3 29 29 H 1.09001 * 109.47455 * 173.93597 * 1 2 3 30 30 H 1.09005 * 109.46980 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47033 * 299.99979 * 3 2 1 32 32 H 1.08999 * 109.46885 * 60.00023 * 3 2 1 33 33 H 0.97005 * 120.00544 * 180.02562 * 7 6 4 34 34 H 1.08995 * 109.47270 * 179.97438 * 12 2 1 35 35 H 1.09006 * 109.47225 * 59.99601 * 12 2 1 36 36 H 0.97007 * 119.99295 * 0.02562 * 13 12 2 37 37 H 0.97003 * 120.00203 * 180.02562 * 16 14 13 38 38 H 0.97000 * 120.00619 * 0.02562 * 17 16 14 39 39 H 1.09007 * 110.97035 * 333.69706 * 22 20 18 40 40 H 1.08994 * 110.97449 * 97.45856 * 22 20 18 41 41 H 1.09007 * 110.48945 * 143.47112 * 23 22 20 42 42 H 1.09002 * 110.48867 * 265.98157 * 23 22 20 43 43 H 0.96999 * 124.34559 * 179.56549 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6925 -1.5596 -1.1321 6 6 1.6491 -0.2765 -2.4818 7 7 0.9351 0.8207 -2.6071 8 14 2.1441 -1.2471 -3.9991 9 1 1.1618 -2.3362 -4.2323 10 1 2.1707 -0.3440 -5.1775 11 1 3.4931 -1.8329 -3.7937 12 6 2.0399 -0.7213 1.2492 13 7 1.5516 -0.0307 2.4454 14 6 1.8768 -0.4914 3.6696 15 8 2.5750 -1.4805 3.7811 16 7 1.4280 0.1442 4.7699 17 7 0.6230 1.2836 4.6414 18 6 0.1695 1.9161 5.7418 19 8 0.4625 1.5017 6.8433 20 6 -0.7015 3.1381 5.6035 21 1 -1.4340 2.9906 4.8099 22 6 0.1655 4.3816 5.3064 23 6 -0.5938 5.4866 6.0768 24 6 -1.3370 4.7388 7.1616 25 8 -1.8253 5.2491 8.1476 26 7 -1.3774 3.4264 6.8739 27 1 -0.3634 0.4169 0.9392 28 1 -0.3633 0.6050 -0.8307 29 1 -0.3634 -1.0219 -0.1086 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 0.6652 1.1259 -3.4875 34 1 3.1299 -0.7217 1.2490 35 1 1.6765 -1.7490 1.2493 36 1 0.9936 0.7578 2.3563 37 1 1.6623 -0.1872 5.6510 38 1 0.3883 1.6149 3.7604 39 1 1.1749 4.2562 5.6983 40 1 0.1873 4.5957 4.2379 41 1 0.1074 6.1969 6.5149 42 1 -1.2931 6.0001 5.4169 43 1 -1.7988 2.7560 7.4341 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000858533785.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:46 Heat of formation + Delta-G solvation = -63.496025 kcal Electronic energy + Delta-G solvation = -26204.153241 eV Core-core repulsion = 22285.972483 eV Total energy + Delta-G solvation = -3918.180758 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.163 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.32776 -40.20308 -39.12331 -36.75273 -36.52443 -35.80454 -33.37293 -31.93597 -31.47652 -30.76606 -28.31480 -25.88678 -25.79748 -24.98123 -23.42630 -21.54860 -21.25172 -20.91666 -19.45040 -18.82023 -18.31239 -17.67397 -16.81737 -16.13378 -15.88433 -15.81918 -15.45182 -15.02649 -14.89230 -14.74129 -14.32680 -14.08555 -13.82523 -13.67884 -13.24565 -13.12777 -13.01012 -12.55168 -12.33660 -11.72639 -11.66725 -11.44732 -11.32588 -10.95897 -10.80561 -10.74566 -10.52854 -10.37875 -10.29804 -10.19049 -9.78209 -9.60514 -9.48068 -8.93684 -8.84802 -8.49655 -8.34174 -6.13466 -4.22077 1.51252 1.92132 2.21356 2.86454 3.19286 3.22806 3.26207 3.29799 3.34198 3.66775 3.77435 4.00132 4.31850 4.34323 4.45859 4.81836 4.86572 5.14575 5.18162 5.26575 5.37613 5.92838 6.09471 6.19195 6.28377 6.31447 6.52531 6.55614 6.61094 6.62051 6.78961 6.84869 6.87480 7.07888 7.20782 7.41070 7.48835 7.60102 7.81148 7.85967 7.97755 8.17522 8.27459 8.60192 8.78224 9.44091 10.88735 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.020174 B = 0.002854 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.562469 B = 9809.750038 C =10848.536706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.056 3.944 3 C -0.130 4.130 4 C -0.509 4.509 5 H 0.059 0.941 6 C 0.069 3.931 7 N -0.885 5.885 8 Si 0.893 3.107 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.146 3.854 13 N -0.729 5.729 14 C 0.706 3.294 15 O -0.574 6.574 16 N -0.539 5.539 17 N -0.518 5.518 18 C 0.505 3.495 19 O -0.525 6.525 20 C 0.124 3.876 21 H 0.116 0.884 22 C -0.126 4.126 23 C -0.154 4.154 24 C 0.524 3.476 25 O -0.528 6.528 26 N -0.708 5.708 27 H 0.003 0.997 28 H 0.083 0.917 29 H 0.031 0.969 30 H 0.028 0.972 31 H 0.087 0.913 32 H 0.002 0.998 33 H 0.261 0.739 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.388 0.612 37 H 0.438 0.562 38 H 0.424 0.576 39 H 0.092 0.908 40 H 0.109 0.891 41 H 0.108 0.892 42 H 0.113 0.887 43 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.664 8.896 11.114 14.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.056 3.944 3 C -0.187 4.187 4 C -0.547 4.547 5 H 0.077 0.923 6 C -0.133 4.133 7 N -0.524 5.524 8 Si 0.721 3.279 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.023 3.977 13 N -0.385 5.385 14 C 0.405 3.595 15 O -0.448 6.448 16 N -0.298 5.298 17 N -0.269 5.269 18 C 0.289 3.711 19 O -0.399 6.399 20 C 0.013 3.987 21 H 0.134 0.866 22 C -0.164 4.164 23 C -0.195 4.195 24 C 0.311 3.689 25 O -0.404 6.404 26 N -0.365 5.365 27 H 0.022 0.978 28 H 0.101 0.899 29 H 0.050 0.950 30 H 0.047 0.953 31 H 0.106 0.894 32 H 0.021 0.979 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.224 0.776 37 H 0.284 0.716 38 H 0.266 0.734 39 H 0.110 0.890 40 H 0.127 0.873 41 H 0.127 0.873 42 H 0.131 0.869 43 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -4.216 8.335 12.081 15.271 hybrid contribution -0.206 -0.560 -0.823 1.017 sum -4.422 7.775 11.257 14.378 Atomic orbital electron populations 1.21815 0.97703 1.00391 0.98728 1.18375 0.92768 0.92800 0.90508 1.21858 0.98822 0.98234 0.99834 1.20942 1.29540 1.14466 0.89789 0.92307 1.24856 0.94885 0.94741 0.98829 1.69798 1.37759 1.21365 1.23433 0.86586 0.79103 0.79918 0.82273 1.20594 1.21313 1.19932 1.21724 0.98285 0.95681 0.81976 1.45586 1.55309 1.32796 1.04806 1.15901 0.80595 0.82682 0.80276 1.91012 1.42916 1.26778 1.84090 1.44759 1.52595 1.22308 1.10112 1.44819 1.49291 1.22696 1.10139 1.20893 0.81474 0.84873 0.83901 1.90788 1.57798 1.66072 1.25245 1.21470 0.95067 0.93347 0.88825 0.86632 1.22716 0.99276 0.91133 1.03282 1.22386 1.00865 0.98738 0.97475 1.20841 0.79018 0.82598 0.86464 1.90786 1.48324 1.71674 1.29628 1.45926 1.57481 1.09693 1.23412 0.97829 0.89862 0.94995 0.95259 0.89443 0.97914 0.92926 0.92410 0.92405 0.77649 0.71622 0.73441 0.88973 0.87269 0.87321 0.86912 0.74275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.56 8.03 37.15 0.30 -2.26 16 2 C 0.06 1.17 0.50 -155.66 -0.08 1.09 16 3 C -0.13 -2.57 8.11 37.16 0.30 -2.27 16 4 C -0.51 -12.40 8.01 -34.44 -0.28 -12.68 16 5 H 0.06 1.46 7.75 -52.48 -0.41 1.05 16 6 C 0.07 1.69 5.13 -17.82 -0.09 1.60 16 7 N -0.89 -21.98 9.45 55.43 0.52 -21.45 16 8 Si 0.89 19.70 29.54 -169.99 -5.02 14.68 16 9 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 10 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 12 C 0.15 2.79 4.50 -4.04 -0.02 2.77 16 13 N -0.73 -11.11 4.87 -65.23 -0.32 -11.43 16 14 C 0.71 11.17 8.68 -86.92 -0.75 10.42 16 15 O -0.57 -11.45 17.18 5.29 0.09 -11.36 16 16 N -0.54 -6.63 6.26 27.63 0.17 -6.46 16 17 N -0.52 -4.53 6.26 31.22 0.20 -4.34 16 18 C 0.50 4.42 7.15 -10.99 -0.08 4.34 16 19 O -0.53 -6.65 16.38 5.56 0.09 -6.56 16 20 C 0.12 0.69 3.92 -68.17 -0.27 0.42 16 21 H 0.12 0.31 8.14 -51.92 -0.42 -0.11 16 22 C -0.13 -0.51 6.67 -25.10 -0.17 -0.68 16 23 C -0.15 -0.78 6.86 -26.74 -0.18 -0.97 16 24 C 0.52 4.86 8.43 -10.86 -0.09 4.77 16 25 O -0.53 -7.27 18.03 5.56 0.10 -7.17 16 26 N -0.71 -5.49 5.46 -53.89 -0.29 -5.79 16 27 H 0.00 0.05 6.71 -51.93 -0.35 -0.30 16 28 H 0.08 1.85 6.25 -51.93 -0.32 1.52 16 29 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.09 1.96 6.10 -51.93 -0.32 1.64 16 32 H 0.00 0.03 6.86 -51.93 -0.36 -0.33 16 33 H 0.26 6.30 8.31 -40.82 -0.34 5.96 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.39 4.89 4.08 -40.82 -0.17 4.73 16 37 H 0.44 5.51 8.10 -182.60 -1.48 4.03 16 38 H 0.42 2.77 6.70 -182.60 -1.22 1.54 16 39 H 0.09 0.45 7.91 -51.93 -0.41 0.04 16 40 H 0.11 0.17 8.14 -51.93 -0.42 -0.25 16 41 H 0.11 0.51 8.14 -51.92 -0.42 0.08 16 42 H 0.11 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.42 3.33 8.94 -40.82 -0.36 2.97 16 LS Contribution 353.59 15.07 5.33 5.33 Total: -1.00 -32.56 353.59 -8.45 -41.01 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -7.91 Total: 6.98 kcal Atomic # 6 Polarization: 7.96 SS G_CDS: -1.41 Total: 6.55 kcal Atomic # 7 Polarization: -49.74 SS G_CDS: 0.28 Total: -49.46 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: 0.28 Total: -25.10 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.02 Total: 14.68 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.56 -8.45 -41.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858533785.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.482 kcal (2) G-P(sol) polarization free energy of solvation -32.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds