Wall clock time and date at job start Fri Apr 10 2020 18:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47367 * 2 1 4 4 C 1.50705 * 109.47134 * 239.99541 * 2 1 3 5 5 H 1.08003 * 120.00513 * 237.00864 * 4 2 1 6 6 C 1.37879 * 119.99484 * 57.01327 * 4 2 1 7 7 N 1.31507 * 120.00460 * 5.53620 * 6 4 2 8 8 Si 1.86802 * 119.99892 * 185.54058 * 6 4 2 9 9 H 1.48502 * 109.47245 * 84.99742 * 8 6 4 10 10 H 1.48493 * 109.47212 * 204.99726 * 8 6 4 11 11 H 1.48501 * 109.47042 * 324.99849 * 8 6 4 12 12 C 1.52999 * 109.47132 * 120.00097 * 2 1 3 13 13 N 1.46500 * 109.47259 * 299.99884 * 12 2 1 14 14 C 1.34777 * 120.00452 * 179.97438 * 13 12 2 15 15 O 1.21582 * 119.99574 * 359.97438 * 14 13 12 16 16 N 1.34771 * 120.00172 * 179.97438 * 14 13 12 17 17 N 1.40097 * 119.99975 * 0.02562 * 16 14 13 18 18 C 1.34779 * 120.00431 * 179.72286 * 17 16 14 19 19 O 1.21283 * 119.99148 * 0.27835 * 18 17 16 20 20 C 1.50693 * 120.00753 * 180.27431 * 18 17 16 21 21 H 1.09008 * 110.21259 * 41.92857 * 20 18 17 22 22 C 1.54479 * 110.24730 * 280.00623 * 20 18 17 23 23 C 1.54625 * 101.76421 * 215.58066 * 22 20 18 24 24 C 1.51283 * 104.19695 * 24.79378 * 23 22 20 25 25 O 1.21279 * 124.94317 * 163.74211 * 24 23 22 26 26 N 1.34418 * 110.11341 * 343.74923 * 24 23 22 27 27 H 1.08997 * 109.47625 * 293.93567 * 1 2 3 28 28 H 1.08999 * 109.47214 * 53.93447 * 1 2 3 29 29 H 1.09001 * 109.47455 * 173.93597 * 1 2 3 30 30 H 1.09005 * 109.46980 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47033 * 299.99979 * 3 2 1 32 32 H 1.08999 * 109.46885 * 60.00023 * 3 2 1 33 33 H 0.97005 * 120.00544 * 180.02562 * 7 6 4 34 34 H 1.08995 * 109.47270 * 179.97438 * 12 2 1 35 35 H 1.09006 * 109.47225 * 59.99601 * 12 2 1 36 36 H 0.97007 * 119.99295 * 0.02562 * 13 12 2 37 37 H 0.97003 * 120.00203 * 180.02562 * 16 14 13 38 38 H 0.97000 * 120.00619 * 0.02562 * 17 16 14 39 39 H 1.09007 * 110.97035 * 333.69706 * 22 20 18 40 40 H 1.08994 * 110.97449 * 97.45856 * 22 20 18 41 41 H 1.09007 * 110.48945 * 143.47112 * 23 22 20 42 42 H 1.09002 * 110.48867 * 265.98157 * 23 22 20 43 43 H 0.96999 * 124.34559 * 179.56549 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6925 -1.5596 -1.1321 6 6 1.6491 -0.2765 -2.4818 7 7 0.9351 0.8207 -2.6071 8 14 2.1441 -1.2471 -3.9991 9 1 1.1618 -2.3362 -4.2323 10 1 2.1707 -0.3440 -5.1775 11 1 3.4931 -1.8329 -3.7937 12 6 2.0399 -0.7213 1.2492 13 7 1.5516 -0.0307 2.4454 14 6 1.8768 -0.4914 3.6696 15 8 2.5750 -1.4805 3.7811 16 7 1.4280 0.1442 4.7699 17 7 0.6230 1.2836 4.6414 18 6 0.1695 1.9161 5.7418 19 8 0.4625 1.5017 6.8433 20 6 -0.7015 3.1381 5.6035 21 1 -1.4340 2.9906 4.8099 22 6 0.1655 4.3816 5.3064 23 6 -0.5938 5.4866 6.0768 24 6 -1.3370 4.7388 7.1616 25 8 -1.8253 5.2491 8.1476 26 7 -1.3774 3.4264 6.8739 27 1 -0.3634 0.4169 0.9392 28 1 -0.3633 0.6050 -0.8307 29 1 -0.3634 -1.0219 -0.1086 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 0.6652 1.1259 -3.4875 34 1 3.1299 -0.7217 1.2490 35 1 1.6765 -1.7490 1.2493 36 1 0.9936 0.7578 2.3563 37 1 1.6623 -0.1872 5.6510 38 1 0.3883 1.6149 3.7604 39 1 1.1749 4.2562 5.6983 40 1 0.1873 4.5957 4.2379 41 1 0.1074 6.1969 6.5149 42 1 -1.2931 6.0001 5.4169 43 1 -1.7988 2.7560 7.4341 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000858533785.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:45 Heat of formation + Delta-G solvation = -89.925128 kcal Electronic energy + Delta-G solvation = -26205.299293 eV Core-core repulsion = 22285.972483 eV Total energy + Delta-G solvation = -3919.326810 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.163 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.05700 -41.25231 -40.07164 -38.20250 -37.40296 -36.80117 -34.93216 -32.88260 -32.35876 -32.00343 -28.96203 -27.47939 -27.42249 -26.65777 -23.97348 -22.49167 -22.21911 -21.51877 -20.68043 -20.26289 -19.11656 -18.39306 -17.80867 -17.59598 -16.89801 -16.81941 -16.51371 -16.45651 -15.99305 -15.88912 -15.34306 -15.04694 -14.71541 -14.70175 -14.65041 -14.12542 -13.94719 -13.58793 -13.23458 -13.04100 -13.01643 -12.70308 -12.57481 -12.51700 -12.16900 -12.12013 -12.05966 -11.78753 -11.42062 -11.37048 -11.14521 -11.00863 -10.65901 -10.35577 -10.25823 -10.14362 -9.40796 -7.99388 -6.11809 0.64927 1.20597 1.45602 1.49970 1.53422 1.55840 1.98829 2.01632 2.34160 2.50753 3.03138 3.25768 3.31426 3.57186 3.93745 4.03770 4.10776 4.42802 4.51505 4.57922 4.77315 4.88556 5.02529 5.03602 5.07962 5.10735 5.13031 5.25131 5.27345 5.34016 5.56233 5.61620 5.69063 5.74980 5.76220 5.92046 6.19465 6.23631 6.28416 6.49241 6.59596 6.91698 7.12960 7.18047 7.38277 7.55341 8.99707 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.020174 B = 0.002854 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.562469 B = 9809.750038 C =10848.536706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.052 3.948 3 C -0.121 4.121 4 C -0.530 4.530 5 H 0.042 0.958 6 C 0.034 3.966 7 N -0.894 5.894 8 Si 0.936 3.064 9 H -0.281 1.281 10 H -0.285 1.285 11 H -0.279 1.279 12 C 0.162 3.838 13 N -0.716 5.716 14 C 0.710 3.290 15 O -0.619 6.619 16 N -0.532 5.532 17 N -0.506 5.506 18 C 0.510 3.490 19 O -0.567 6.567 20 C 0.128 3.872 21 H 0.160 0.840 22 C -0.119 4.119 23 C -0.146 4.146 24 C 0.513 3.487 25 O -0.586 6.586 26 N -0.710 5.710 27 H 0.045 0.955 28 H 0.062 0.938 29 H 0.015 0.985 30 H 0.016 0.984 31 H 0.063 0.937 32 H 0.045 0.955 33 H 0.260 0.740 34 H 0.041 0.959 35 H 0.040 0.960 36 H 0.404 0.596 37 H 0.439 0.561 38 H 0.437 0.563 39 H 0.082 0.918 40 H 0.148 0.852 41 H 0.112 0.888 42 H 0.139 0.861 43 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.401 10.383 10.580 15.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.052 3.948 3 C -0.179 4.179 4 C -0.568 4.568 5 H 0.061 0.939 6 C -0.166 4.166 7 N -0.532 5.532 8 Si 0.764 3.236 9 H -0.207 1.207 10 H -0.210 1.210 11 H -0.204 1.204 12 C 0.038 3.962 13 N -0.373 5.373 14 C 0.409 3.591 15 O -0.497 6.497 16 N -0.288 5.288 17 N -0.259 5.259 18 C 0.296 3.704 19 O -0.443 6.443 20 C 0.018 3.982 21 H 0.177 0.823 22 C -0.157 4.157 23 C -0.185 4.185 24 C 0.301 3.699 25 O -0.466 6.466 26 N -0.365 5.365 27 H 0.063 0.937 28 H 0.080 0.920 29 H 0.034 0.966 30 H 0.035 0.965 31 H 0.082 0.918 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.242 0.758 37 H 0.284 0.716 38 H 0.282 0.718 39 H 0.101 0.899 40 H 0.166 0.834 41 H 0.130 0.870 42 H 0.157 0.843 43 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -4.973 9.853 11.518 15.952 hybrid contribution 0.018 -1.041 -0.597 1.200 sum -4.955 8.812 10.921 14.882 Atomic orbital electron populations 1.21666 0.96723 0.99308 1.00071 1.18365 0.93460 0.93268 0.89742 1.21698 0.97996 0.97440 1.00764 1.21259 1.29474 1.14430 0.91683 0.93923 1.25321 0.95282 0.95498 1.00501 1.69882 1.38061 1.21701 1.23585 0.85913 0.78418 0.78948 0.80308 1.20711 1.21043 1.20415 1.21265 0.97185 0.94983 0.82757 1.45158 1.55453 1.33042 1.03655 1.15835 0.80222 0.82268 0.80754 1.90987 1.44861 1.28900 1.84916 1.44437 1.52260 1.23093 1.08977 1.44866 1.48586 1.21314 1.11145 1.21579 0.80764 0.85108 0.82984 1.90790 1.59208 1.67332 1.26934 1.21830 0.95535 0.92146 0.88708 0.82322 1.22853 0.98123 0.89327 1.05400 1.22437 1.00985 0.98759 0.96350 1.21644 0.78461 0.83223 0.86560 1.90749 1.50868 1.72798 1.32175 1.46101 1.56831 1.09372 1.24155 0.93652 0.91953 0.96562 0.96464 0.91801 0.93591 0.93061 0.94063 0.94121 0.75773 0.71565 0.71785 0.89884 0.83372 0.86954 0.84323 0.74895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.51 8.03 71.98 0.58 -3.93 16 2 C 0.05 2.11 0.50 -52.93 -0.03 2.08 16 3 C -0.12 -4.52 8.11 71.98 0.58 -3.94 16 4 C -0.53 -25.82 8.01 25.60 0.20 -25.61 16 5 H 0.04 2.16 7.75 -2.91 -0.02 2.13 16 6 C 0.03 1.68 5.13 84.66 0.43 2.12 16 7 N -0.89 -43.72 9.45 21.45 0.20 -43.52 16 8 Si 0.94 40.28 29.54 68.60 2.03 42.30 16 9 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 10 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 11 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 12 C 0.16 6.03 4.50 86.38 0.39 6.42 16 13 N -0.72 -19.98 4.87 -478.54 -2.33 -22.31 16 14 C 0.71 21.25 8.68 179.06 1.55 22.80 16 15 O -0.62 -24.50 17.18 -3.97 -0.07 -24.57 16 16 N -0.53 -11.93 6.26 -184.76 -1.16 -13.09 16 17 N -0.51 -7.04 6.26 -173.53 -1.09 -8.12 16 18 C 0.51 7.42 7.15 87.65 0.63 8.05 16 19 O -0.57 -13.55 16.38 -3.04 -0.05 -13.60 16 20 C 0.13 0.91 3.92 44.70 0.18 1.09 16 21 H 0.16 -0.09 8.14 -2.38 -0.02 -0.11 16 22 C -0.12 -0.42 6.67 31.65 0.21 -0.21 16 23 C -0.15 -1.00 6.86 30.59 0.21 -0.79 16 24 C 0.51 8.83 8.43 87.90 0.74 9.58 16 25 O -0.59 -16.32 18.03 -3.03 -0.05 -16.38 16 26 N -0.71 -9.71 5.46 -442.99 -2.42 -12.13 16 27 H 0.04 1.28 6.71 -2.39 -0.02 1.26 16 28 H 0.06 2.64 6.25 -2.39 -0.01 2.63 16 29 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.02 0.65 8.14 -2.38 -0.02 0.63 16 31 H 0.06 2.73 6.10 -2.39 -0.01 2.72 16 32 H 0.05 1.27 6.86 -2.39 -0.02 1.25 16 33 H 0.26 12.36 8.31 -92.70 -0.77 11.59 16 34 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 36 H 0.40 8.43 4.08 -92.70 -0.38 8.05 16 37 H 0.44 10.46 8.10 -213.32 -1.73 8.73 16 38 H 0.44 3.49 6.70 -213.32 -1.43 2.06 16 39 H 0.08 0.51 7.91 -2.38 -0.02 0.49 16 40 H 0.15 -0.53 8.14 -2.39 -0.02 -0.54 16 41 H 0.11 0.75 8.14 -2.38 -0.02 0.73 16 42 H 0.14 0.29 8.14 -2.39 -0.02 0.27 16 43 H 0.41 6.27 8.94 -92.71 -0.83 5.44 16 Total: -1.00 -74.11 353.59 -2.53 -76.64 By element: Atomic # 1 Polarization: 20.39 SS G_CDS: -3.27 Total: 17.12 kcal Atomic # 6 Polarization: 11.97 SS G_CDS: 5.68 Total: 17.65 kcal Atomic # 7 Polarization: -92.38 SS G_CDS: -6.79 Total: -99.17 kcal Atomic # 8 Polarization: -54.37 SS G_CDS: -0.17 Total: -54.55 kcal Atomic # 14 Polarization: 40.28 SS G_CDS: 2.03 Total: 42.30 kcal Total: -74.11 -2.53 -76.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858533785.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.287 kcal (2) G-P(sol) polarization free energy of solvation -74.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds