Wall clock time and date at job start Fri Apr 10 2020 18:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34228 * 116.99551 * 2 1 4 4 O 1.20824 * 120.00499 * 0.02562 * 3 2 1 5 5 C 1.50708 * 119.99623 * 180.02562 * 3 2 1 6 6 N 1.46499 * 109.46942 * 180.02562 * 5 3 2 7 7 C 1.36825 * 119.99824 * 264.21278 * 6 5 3 8 8 H 1.08001 * 119.99363 * 210.75353 * 7 6 5 9 9 C 1.39065 * 119.99753 * 30.75725 * 7 6 5 10 10 N 1.31348 * 120.00727 * 5.81362 * 9 7 6 11 11 Si 1.86805 * 119.99527 * 185.81639 * 9 7 6 12 12 H 1.48500 * 109.47199 * 59.99974 * 11 9 7 13 13 H 1.48499 * 109.47180 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47280 * 299.99853 * 11 9 7 15 15 C 1.34780 * 119.99981 * 84.20904 * 6 5 3 16 16 O 1.21650 * 120.00025 * 0.02562 * 15 6 5 17 17 C 1.46952 * 119.99780 * 179.97438 * 15 6 5 18 18 C 1.33121 * 120.00196 * 187.25755 * 17 15 6 19 19 C 1.50706 * 119.99827 * 15.64729 * 18 17 15 20 20 N 1.46897 * 109.47188 * 128.93353 * 19 18 17 21 21 C 1.47017 * 110.99982 * 46.32145 * 20 19 18 22 22 C 1.53089 * 109.25660 * 182.34772 * 21 20 19 23 23 O 1.43017 * 109.29417 * 303.21709 * 22 21 20 24 24 C 1.43011 * 113.73918 * 58.64869 * 23 22 21 25 25 C 1.47013 * 110.99678 * 170.00074 * 20 19 18 26 26 H 1.09002 * 109.47237 * 299.99130 * 1 2 3 27 27 H 1.09000 * 109.47581 * 60.00030 * 1 2 3 28 28 H 1.09004 * 109.46897 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46763 * 60.00615 * 5 3 2 30 30 H 1.08999 * 109.46898 * 300.00038 * 5 3 2 31 31 H 0.96999 * 120.00327 * 179.97438 * 10 9 7 32 32 H 1.08006 * 120.00119 * 7.26788 * 17 15 6 33 33 H 1.07999 * 120.00345 * 195.63876 * 18 17 15 34 34 H 1.09002 * 109.46453 * 8.93404 * 19 18 17 35 35 H 1.09003 * 109.46731 * 248.94132 * 19 18 17 36 36 H 1.09005 * 109.46764 * 62.43202 * 21 20 19 37 37 H 1.09000 * 109.54469 * 302.30480 * 21 20 19 38 38 H 1.09002 * 109.50719 * 183.26013 * 22 21 20 39 39 H 1.09000 * 109.50973 * 63.17633 * 22 21 20 40 40 H 1.08997 * 109.50671 * 61.26636 * 24 23 22 41 41 H 1.09001 * 109.50900 * 181.35011 * 24 23 22 42 42 H 1.08997 * 109.51206 * 57.67330 * 25 20 19 43 43 H 1.09006 * 109.50767 * 297.54356 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9816 2.6798 0.0002 7 6 4.2896 3.3027 -1.1785 8 1 5.0262 4.0924 -1.1954 9 6 3.6542 2.9190 -2.3545 10 7 2.6786 2.0404 -2.3174 11 14 4.1883 3.6533 -3.9870 12 1 5.6176 3.3321 -4.2303 13 1 3.3605 3.0836 -5.0804 14 1 4.0117 5.1272 -3.9483 15 6 4.0602 3.3587 1.1618 16 8 3.7867 2.8047 2.2098 17 6 4.4773 4.7678 1.1626 18 6 4.6948 5.3970 2.3154 19 6 4.8619 4.6047 3.5864 20 7 6.0869 5.0344 4.2738 21 6 6.1754 6.5010 4.3250 22 6 7.4913 6.9043 4.9955 23 8 7.5607 6.3112 6.2951 24 6 7.4786 4.8835 6.2814 25 6 6.1621 4.4597 5.6249 26 1 -0.3634 0.5137 0.8901 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.9556 0.7811 -0.8909 30 1 3.9563 0.7806 0.8891 31 1 2.2352 1.7730 -3.1376 32 1 4.6073 5.2930 0.2278 33 1 4.7516 6.4752 2.3398 34 1 4.9331 3.5438 3.3464 35 1 4.0026 4.7735 4.2354 36 1 5.3378 6.8957 4.9003 37 1 6.1444 6.9038 3.3127 38 1 7.5351 7.9895 5.0879 39 1 8.3292 6.5565 4.3914 40 1 8.3157 4.4762 5.7145 41 1 7.5140 4.5071 7.3038 42 1 6.1209 3.3724 5.5607 43 1 5.3247 4.8216 6.2216 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865977806.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:51 Heat of formation + Delta-G solvation = -107.846531 kcal Electronic energy + Delta-G solvation = -26807.555147 eV Core-core repulsion = 22855.158455 eV Total energy + Delta-G solvation = -3952.396692 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.64528 -39.35705 -38.40164 -36.16550 -35.31586 -34.56583 -32.46649 -31.65376 -31.12925 -28.83156 -27.76835 -26.30819 -25.06360 -24.09090 -23.75121 -21.36106 -20.32918 -19.71289 -18.91978 -16.86380 -16.62942 -16.51681 -16.16746 -15.96663 -15.48557 -15.22917 -15.06105 -14.94208 -14.80751 -14.44191 -14.05475 -13.80305 -13.59875 -13.09089 -12.69071 -12.49751 -12.35984 -12.16607 -11.81665 -11.60768 -11.38626 -11.32962 -11.25487 -11.24920 -10.95027 -10.87389 -10.66704 -10.53560 -10.40515 -9.77195 -9.65257 -9.42474 -9.05110 -8.83994 -8.37804 -8.10951 -7.79647 -6.54526 -4.15292 2.07930 3.09373 3.13910 3.15465 3.63175 3.76223 3.79900 4.02747 4.06781 4.41633 4.67425 4.89716 4.99860 5.04854 5.09639 5.16486 5.29447 5.51075 5.57564 5.60306 5.70722 5.71774 5.79513 5.81976 5.86083 5.92249 5.97018 6.04760 6.16618 6.30829 6.41924 6.52612 6.59906 6.97294 7.06337 7.16731 7.21805 7.22944 7.30846 7.52133 7.66868 8.18708 8.91816 9.17983 9.31092 9.72440 10.52801 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.016042 B = 0.003672 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.048773 B = 7624.242296 C = 8951.399079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.378 6.378 3 C 0.487 3.513 4 O -0.495 6.495 5 C 0.159 3.841 6 N -0.418 5.418 7 C -0.336 4.336 8 H 0.101 0.899 9 C 0.042 3.958 10 N -0.869 5.869 11 Si 0.932 3.068 12 H -0.271 1.271 13 H -0.283 1.283 14 H -0.272 1.272 15 C 0.497 3.503 16 O -0.597 6.597 17 C -0.147 4.147 18 C -0.123 4.123 19 C 0.063 3.937 20 N -0.532 5.532 21 C 0.008 3.992 22 C 0.064 3.936 23 O -0.391 6.391 24 C 0.065 3.935 25 C 0.019 3.981 26 H 0.049 0.951 27 H 0.054 0.946 28 H 0.084 0.916 29 H 0.116 0.884 30 H 0.081 0.919 31 H 0.274 0.726 32 H 0.129 0.871 33 H 0.112 0.888 34 H 0.136 0.864 35 H 0.035 0.965 36 H 0.038 0.962 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.095 0.905 42 H 0.087 0.913 43 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.169 2.421 7.394 9.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 O -0.296 6.296 3 C 0.328 3.672 4 O -0.379 6.379 5 C 0.034 3.966 6 N -0.135 5.135 7 C -0.463 4.463 8 H 0.119 0.881 9 C -0.164 4.164 10 N -0.506 5.506 11 Si 0.758 3.242 12 H -0.196 1.196 13 H -0.209 1.209 14 H -0.197 1.197 15 C 0.290 3.710 16 O -0.486 6.486 17 C -0.169 4.169 18 C -0.144 4.144 19 C -0.062 4.062 20 N -0.258 5.258 21 C -0.120 4.120 22 C -0.013 4.013 23 O -0.309 6.309 24 C -0.012 4.012 25 C -0.110 4.110 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.103 0.897 29 H 0.133 0.867 30 H 0.099 0.901 31 H 0.085 0.915 32 H 0.147 0.853 33 H 0.129 0.871 34 H 0.153 0.847 35 H 0.053 0.947 36 H 0.056 0.944 37 H 0.109 0.891 38 H 0.112 0.888 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.113 0.887 42 H 0.106 0.894 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 5.074 2.255 7.604 9.416 hybrid contribution -1.081 0.704 -1.062 1.671 sum 3.992 2.959 6.542 8.216 Atomic orbital electron populations 1.22898 0.78833 1.01646 1.01564 1.86445 1.21577 1.35665 1.85936 1.23738 0.92124 0.80561 0.70789 1.90504 1.66334 1.36300 1.44804 1.20382 0.87470 0.85662 1.03130 1.43183 1.56378 1.07696 1.06219 1.19544 1.22331 1.20442 0.84022 0.88145 1.25434 0.94029 0.96498 1.00400 1.69549 1.20695 1.31134 1.29181 0.85912 0.78548 0.79343 0.80362 1.19642 1.20854 1.19701 1.18469 0.82263 0.86576 0.83709 1.90469 1.56256 1.70456 1.31406 1.22769 1.00237 0.95505 0.98375 1.23299 0.98647 0.98281 0.94161 1.21979 0.88358 1.03789 0.92093 1.62522 1.39142 1.07518 1.16596 1.22894 0.97566 0.89899 1.01666 1.22674 0.96727 0.97882 0.84036 1.87938 1.94388 1.20056 1.28553 1.22663 0.96590 0.81087 1.00899 1.22745 0.97632 1.01095 0.89479 0.93257 0.92697 0.89735 0.86659 0.90074 0.91490 0.85321 0.87071 0.84724 0.94681 0.94374 0.89089 0.88844 0.92315 0.92282 0.88728 0.89424 0.94284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.79 10.56 101.05 1.07 1.86 16 2 O -0.38 -8.17 10.57 -39.25 -0.41 -8.59 16 3 C 0.49 12.04 5.93 36.01 0.21 12.25 16 4 O -0.50 -13.81 15.19 -18.75 -0.28 -14.09 16 5 C 0.16 3.75 5.14 -5.19 -0.03 3.73 16 6 N -0.42 -10.33 2.14 -117.49 -0.25 -10.58 16 7 C -0.34 -8.20 8.71 -15.02 -0.13 -8.33 16 8 H 0.10 2.29 6.48 -52.49 -0.34 1.95 16 9 C 0.04 1.03 5.16 -17.45 -0.09 0.94 16 10 N -0.87 -22.24 8.58 55.50 0.48 -21.77 16 11 Si 0.93 18.95 29.56 -169.99 -5.02 13.93 16 12 H -0.27 -5.36 7.11 56.52 0.40 -4.95 16 13 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 14 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16 15 C 0.50 11.93 7.16 -12.73 -0.09 11.84 16 16 O -0.60 -14.99 12.99 5.23 0.07 -14.92 16 17 C -0.15 -3.01 9.20 -37.84 -0.35 -3.35 16 18 C -0.12 -2.16 8.74 -36.09 -0.32 -2.48 16 19 C 0.06 1.11 4.87 -4.97 -0.02 1.09 16 20 N -0.53 -8.05 4.87 -235.75 -1.15 -9.19 16 21 C 0.01 0.10 5.11 -3.71 -0.02 0.09 16 22 C 0.06 0.73 7.01 37.20 0.26 0.99 16 23 O -0.39 -5.06 10.83 -35.23 -0.38 -5.45 16 24 C 0.06 0.74 7.01 37.21 0.26 1.00 16 25 C 0.02 0.25 5.63 -3.71 -0.02 0.23 16 26 H 0.05 0.85 8.13 -51.93 -0.42 0.43 16 27 H 0.05 1.00 8.13 -51.93 -0.42 0.58 16 28 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.12 2.67 6.96 -51.93 -0.36 2.31 16 30 H 0.08 1.78 7.60 -51.93 -0.39 1.38 16 31 H 0.27 6.79 8.31 -40.82 -0.34 6.46 16 32 H 0.13 2.50 6.50 -52.48 -0.34 2.16 16 33 H 0.11 1.63 6.36 -52.49 -0.33 1.30 16 34 H 0.14 2.80 4.94 -52.20 -0.26 2.54 16 35 H 0.04 0.64 8.08 -51.93 -0.42 0.22 16 36 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.09 1.11 5.95 -51.93 -0.31 0.80 16 38 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 43 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 348.83 15.07 5.26 5.26 Total: -1.00 -30.86 348.83 -7.09 -37.95 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -6.12 Total: 7.60 kcal Atomic # 6 Polarization: 19.11 SS G_CDS: 0.74 Total: 19.85 kcal Atomic # 7 Polarization: -40.61 SS G_CDS: -0.92 Total: -41.54 kcal Atomic # 8 Polarization: -42.03 SS G_CDS: -1.01 Total: -43.04 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.02 Total: 13.93 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.86 -7.09 -37.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865977806.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.897 kcal (2) G-P(sol) polarization free energy of solvation -30.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds