Wall clock time and date at job start Fri Apr 10 2020 18:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34228 * 116.99551 * 2 1 4 4 O 1.20824 * 120.00499 * 0.02562 * 3 2 1 5 5 C 1.50708 * 119.99623 * 180.02562 * 3 2 1 6 6 N 1.46499 * 109.46942 * 180.02562 * 5 3 2 7 7 C 1.36825 * 119.99824 * 264.21278 * 6 5 3 8 8 H 1.08001 * 119.99363 * 210.75353 * 7 6 5 9 9 C 1.39065 * 119.99753 * 30.75725 * 7 6 5 10 10 N 1.31348 * 120.00727 * 5.81362 * 9 7 6 11 11 Si 1.86805 * 119.99527 * 185.81639 * 9 7 6 12 12 H 1.48500 * 109.47199 * 59.99974 * 11 9 7 13 13 H 1.48499 * 109.47180 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47280 * 299.99853 * 11 9 7 15 15 C 1.34780 * 119.99981 * 84.20904 * 6 5 3 16 16 O 1.21650 * 120.00025 * 0.02562 * 15 6 5 17 17 C 1.46952 * 119.99780 * 179.97438 * 15 6 5 18 18 C 1.33121 * 120.00196 * 187.25755 * 17 15 6 19 19 C 1.50706 * 119.99827 * 15.64729 * 18 17 15 20 20 N 1.46897 * 109.47188 * 128.93353 * 19 18 17 21 21 C 1.47017 * 110.99982 * 46.32145 * 20 19 18 22 22 C 1.53089 * 109.25660 * 182.34772 * 21 20 19 23 23 O 1.43017 * 109.29417 * 303.21709 * 22 21 20 24 24 C 1.43011 * 113.73918 * 58.64869 * 23 22 21 25 25 C 1.47013 * 110.99678 * 170.00074 * 20 19 18 26 26 H 1.09002 * 109.47237 * 299.99130 * 1 2 3 27 27 H 1.09000 * 109.47581 * 60.00030 * 1 2 3 28 28 H 1.09004 * 109.46897 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46763 * 60.00615 * 5 3 2 30 30 H 1.08999 * 109.46898 * 300.00038 * 5 3 2 31 31 H 0.96999 * 120.00327 * 179.97438 * 10 9 7 32 32 H 1.08006 * 120.00119 * 7.26788 * 17 15 6 33 33 H 1.07999 * 120.00345 * 195.63876 * 18 17 15 34 34 H 1.09002 * 109.46453 * 8.93404 * 19 18 17 35 35 H 1.09003 * 109.46731 * 248.94132 * 19 18 17 36 36 H 1.09005 * 109.46764 * 62.43202 * 21 20 19 37 37 H 1.09000 * 109.54469 * 302.30480 * 21 20 19 38 38 H 1.09002 * 109.50719 * 183.26013 * 22 21 20 39 39 H 1.09000 * 109.50973 * 63.17633 * 22 21 20 40 40 H 1.08997 * 109.50671 * 61.26636 * 24 23 22 41 41 H 1.09001 * 109.50900 * 181.35011 * 24 23 22 42 42 H 1.08997 * 109.51206 * 57.67330 * 25 20 19 43 43 H 1.09006 * 109.50767 * 297.54356 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9816 2.6798 0.0002 7 6 4.2896 3.3027 -1.1785 8 1 5.0262 4.0924 -1.1954 9 6 3.6542 2.9190 -2.3545 10 7 2.6786 2.0404 -2.3174 11 14 4.1883 3.6533 -3.9870 12 1 5.6176 3.3321 -4.2303 13 1 3.3605 3.0836 -5.0804 14 1 4.0117 5.1272 -3.9483 15 6 4.0602 3.3587 1.1618 16 8 3.7867 2.8047 2.2098 17 6 4.4773 4.7678 1.1626 18 6 4.6948 5.3970 2.3154 19 6 4.8619 4.6047 3.5864 20 7 6.0869 5.0344 4.2738 21 6 6.1754 6.5010 4.3250 22 6 7.4913 6.9043 4.9955 23 8 7.5607 6.3112 6.2951 24 6 7.4786 4.8835 6.2814 25 6 6.1621 4.4597 5.6249 26 1 -0.3634 0.5137 0.8901 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.9556 0.7811 -0.8909 30 1 3.9563 0.7806 0.8891 31 1 2.2352 1.7730 -3.1376 32 1 4.6073 5.2930 0.2278 33 1 4.7516 6.4752 2.3398 34 1 4.9331 3.5438 3.3464 35 1 4.0026 4.7735 4.2354 36 1 5.3378 6.8957 4.9003 37 1 6.1444 6.9038 3.3127 38 1 7.5351 7.9895 5.0879 39 1 8.3292 6.5565 4.3914 40 1 8.3157 4.4762 5.7145 41 1 7.5140 4.5071 7.3038 42 1 6.1209 3.3724 5.5607 43 1 5.3247 4.8216 6.2216 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000865977806.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:50 Heat of formation + Delta-G solvation = -128.733795 kcal Electronic energy + Delta-G solvation = -26808.460886 eV Core-core repulsion = 22855.158455 eV Total energy + Delta-G solvation = -3953.302431 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -41.34993 -40.63814 -40.08704 -37.62600 -36.91407 -36.40712 -33.92279 -33.51144 -32.11249 -30.51858 -29.07139 -27.87707 -26.79652 -25.28258 -24.96927 -22.93835 -21.68632 -21.28629 -20.62563 -18.52604 -18.33575 -18.18250 -17.47735 -17.28750 -17.00423 -16.91836 -16.39050 -16.18528 -16.05233 -15.94384 -15.55771 -15.20620 -15.08455 -14.51033 -14.26686 -14.18291 -13.98749 -13.45023 -13.23355 -13.09120 -12.97916 -12.83094 -12.80731 -12.61907 -12.36633 -12.35154 -12.15768 -12.06206 -11.53218 -11.48042 -11.33299 -10.92949 -10.64670 -10.38254 -10.09636 -9.73580 -9.27392 -8.37160 -6.04229 0.51372 1.48407 1.51055 1.58564 1.81796 1.98545 2.33683 2.54059 2.86077 2.95406 3.03463 3.20085 3.86247 3.99059 4.05107 4.15173 4.21351 4.27988 4.32346 4.35106 4.35862 4.42067 4.48594 4.53819 4.61487 4.67559 4.70939 4.74983 4.77997 4.83618 4.91769 5.01390 5.07110 5.38634 5.46151 5.65228 5.73393 5.88557 5.94699 6.04453 6.18903 6.33463 7.06666 7.30272 7.48209 7.89486 8.69714 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.016042 B = 0.003672 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.048773 B = 7624.242296 C = 8951.399079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.380 6.380 3 C 0.489 3.511 4 O -0.535 6.535 5 C 0.157 3.843 6 N -0.433 5.433 7 C -0.350 4.350 8 H 0.113 0.887 9 C -0.002 4.002 10 N -0.897 5.897 11 Si 1.000 3.000 12 H -0.259 1.259 13 H -0.289 1.289 14 H -0.268 1.268 15 C 0.486 3.514 16 O -0.619 6.619 17 C -0.180 4.180 18 C -0.088 4.088 19 C 0.068 3.932 20 N -0.540 5.540 21 C 0.005 3.995 22 C 0.064 3.936 23 O -0.403 6.403 24 C 0.068 3.932 25 C 0.016 3.984 26 H 0.048 0.952 27 H 0.043 0.957 28 H 0.133 0.867 29 H 0.114 0.886 30 H 0.089 0.911 31 H 0.270 0.730 32 H 0.138 0.862 33 H 0.150 0.850 34 H 0.104 0.896 35 H 0.029 0.971 36 H 0.037 0.963 37 H 0.100 0.900 38 H 0.119 0.881 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.118 0.882 42 H 0.084 0.916 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.270 3.705 7.635 10.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.297 6.297 3 C 0.332 3.668 4 O -0.422 6.422 5 C 0.032 3.968 6 N -0.150 5.150 7 C -0.477 4.477 8 H 0.131 0.869 9 C -0.204 4.204 10 N -0.535 5.535 11 Si 0.824 3.176 12 H -0.183 1.183 13 H -0.215 1.215 14 H -0.193 1.193 15 C 0.280 3.720 16 O -0.509 6.509 17 C -0.201 4.201 18 C -0.109 4.109 19 C -0.058 4.058 20 N -0.266 5.266 21 C -0.123 4.123 22 C -0.012 4.012 23 O -0.322 6.322 24 C -0.008 4.008 25 C -0.112 4.112 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.151 0.849 29 H 0.132 0.868 30 H 0.107 0.893 31 H 0.080 0.920 32 H 0.155 0.845 33 H 0.167 0.833 34 H 0.121 0.879 35 H 0.047 0.953 36 H 0.055 0.945 37 H 0.119 0.881 38 H 0.137 0.863 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.136 0.864 42 H 0.103 0.897 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 6.196 3.525 7.862 10.613 hybrid contribution -1.453 0.271 -0.977 1.772 sum 4.742 3.797 6.886 9.182 Atomic orbital electron populations 1.23245 0.76401 1.04681 1.01018 1.86415 1.23945 1.34022 1.85295 1.23907 0.92517 0.80725 0.69656 1.90467 1.67219 1.37661 1.46846 1.20423 0.87220 0.85913 1.03293 1.43398 1.56859 1.08075 1.06684 1.19926 1.22736 1.20902 0.84169 0.86936 1.26301 0.93845 0.96741 1.03494 1.69669 1.21833 1.32478 1.29494 0.84877 0.78465 0.78417 0.75890 1.18337 1.21472 1.19326 1.19120 0.81752 0.87914 0.83230 1.90459 1.57134 1.71373 1.31968 1.22698 1.03747 0.93837 0.99861 1.23681 0.94263 0.99993 0.92940 1.21709 0.89439 1.02200 0.92456 1.62489 1.37169 1.09269 1.17627 1.23014 0.98574 0.88181 1.02484 1.22803 0.95707 0.99326 0.83401 1.87929 1.94294 1.20607 1.29392 1.22741 0.95313 0.80667 1.02128 1.22833 0.98760 1.00983 0.88623 0.93330 0.93763 0.84885 0.86810 0.89274 0.91959 0.84453 0.83272 0.87851 0.95343 0.94509 0.88144 0.86311 0.92045 0.92001 0.86406 0.89712 0.94653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.39 10.56 113.37 1.20 2.58 16 2 O -0.38 -16.51 10.57 -51.40 -0.54 -17.05 16 3 C 0.49 24.79 5.93 71.24 0.42 25.21 16 4 O -0.53 -30.65 15.19 21.97 0.33 -30.32 16 5 C 0.16 7.64 5.14 85.64 0.44 8.08 16 6 N -0.43 -21.88 2.14 -643.87 -1.38 -23.26 16 7 C -0.35 -17.23 8.71 84.11 0.73 -16.49 16 8 H 0.11 5.09 6.48 -2.91 -0.02 5.07 16 9 C 0.00 -0.08 5.16 84.96 0.44 0.36 16 10 N -0.90 -46.73 8.58 21.68 0.19 -46.54 16 11 Si 1.00 38.63 29.56 68.60 2.03 40.66 16 12 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 13 H -0.29 -11.33 7.11 99.48 0.71 -10.62 16 14 H -0.27 -10.13 7.11 99.48 0.71 -9.43 16 15 C 0.49 23.81 7.16 86.53 0.62 24.43 16 16 O -0.62 -32.03 12.99 -4.19 -0.05 -32.09 16 17 C -0.18 -7.29 9.20 23.40 0.22 -7.08 16 18 C -0.09 -2.98 8.74 24.54 0.21 -2.77 16 19 C 0.07 2.38 4.87 85.56 0.42 2.80 16 20 N -0.54 -15.62 4.87 -899.77 -4.38 -20.00 16 21 C 0.01 0.12 5.11 86.31 0.44 0.56 16 22 C 0.06 1.29 7.01 72.01 0.50 1.79 16 23 O -0.40 -9.44 10.83 -148.98 -1.61 -11.05 16 24 C 0.07 1.43 7.01 72.01 0.50 1.93 16 25 C 0.02 0.41 5.63 86.31 0.49 0.90 16 26 H 0.05 1.67 8.13 -2.39 -0.02 1.65 16 27 H 0.04 1.61 8.13 -2.39 -0.02 1.60 16 28 H 0.13 3.25 8.14 -2.38 -0.02 3.23 16 29 H 0.11 5.46 6.96 -2.39 -0.02 5.44 16 30 H 0.09 4.06 7.60 -2.39 -0.02 4.04 16 31 H 0.27 13.65 8.31 -92.71 -0.77 12.88 16 32 H 0.14 5.24 6.50 -2.91 -0.02 5.22 16 33 H 0.15 3.89 6.36 -2.91 -0.02 3.87 16 34 H 0.10 4.40 4.94 -6.74 -0.03 4.36 16 35 H 0.03 1.04 8.08 -2.39 -0.02 1.02 16 36 H 0.04 0.88 8.14 -2.38 -0.02 0.86 16 37 H 0.10 2.12 5.95 -2.39 -0.01 2.11 16 38 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 43 H 0.04 0.92 8.14 -2.38 -0.02 0.90 16 Total: -1.00 -67.81 348.83 2.21 -65.60 By element: Atomic # 1 Polarization: 30.73 SS G_CDS: 1.00 Total: 31.72 kcal Atomic # 6 Polarization: 35.69 SS G_CDS: 6.63 Total: 42.32 kcal Atomic # 7 Polarization: -84.22 SS G_CDS: -5.58 Total: -89.80 kcal Atomic # 8 Polarization: -88.63 SS G_CDS: -1.88 Total: -90.51 kcal Atomic # 14 Polarization: 38.63 SS G_CDS: 2.03 Total: 40.66 kcal Total: -67.81 2.21 -65.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865977806.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.134 kcal (2) G-P(sol) polarization free energy of solvation -67.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds