Wall clock time and date at job start Fri Apr 10 2020 18:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46512 * 109.47033 * 2 1 4 4 C 1.46491 * 119.99962 * 90.00019 * 3 2 1 5 5 C 1.50702 * 109.46957 * 269.99883 * 4 3 2 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 3 7 7 C 1.37884 * 119.99942 * 179.72213 * 5 4 3 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 4 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 4 10 10 H 1.48504 * 109.47196 * 60.00645 * 9 7 5 11 11 H 1.48504 * 109.46887 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47679 * 300.00280 * 9 7 5 13 13 C 1.34774 * 119.99637 * 270.00069 * 3 2 1 14 14 O 1.21281 * 119.99656 * 179.97438 * 13 3 2 15 15 C 1.50708 * 120.00400 * 359.97438 * 13 3 2 16 16 O 1.45196 * 109.46992 * 179.97438 * 15 13 3 17 17 C 1.34227 * 116.99590 * 179.97438 * 16 15 13 18 18 O 1.20832 * 120.00486 * 0.02562 * 17 16 15 19 19 C 1.50699 * 119.99985 * 180.02562 * 17 16 15 20 20 C 1.52997 * 109.47276 * 180.02562 * 19 17 16 21 21 H 1.08999 * 110.43669 * 54.29962 * 20 19 17 22 22 C 1.54633 * 110.48645 * 176.83921 * 20 19 17 23 23 C 1.54487 * 101.76370 * 93.88267 * 22 20 19 24 24 N 1.46761 * 105.47385 * 25.41317 * 23 22 20 25 25 C 1.34750 * 111.35224 * 343.02032 * 24 23 22 26 26 O 1.21276 * 125.12008 * 180.37032 * 25 24 23 27 27 H 1.09001 * 109.47311 * 300.00158 * 1 2 3 28 28 H 1.09003 * 109.47524 * 60.00120 * 1 2 3 29 29 H 1.09007 * 109.47128 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47453 * 240.00375 * 2 1 3 31 31 H 1.09003 * 109.47524 * 119.99880 * 2 1 3 32 32 H 1.09004 * 109.47166 * 150.00149 * 4 3 2 33 33 H 1.08994 * 109.47507 * 29.99855 * 4 3 2 34 34 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 35 35 H 1.08999 * 109.46957 * 300.00083 * 15 13 3 36 36 H 1.08998 * 109.46767 * 59.99658 * 15 13 3 37 37 H 1.09003 * 109.47540 * 300.00199 * 19 17 16 38 38 H 1.09004 * 109.47227 * 60.00252 * 19 17 16 39 39 H 1.09000 * 110.96731 * 211.99819 * 22 20 19 40 40 H 1.08999 * 110.97028 * 335.76336 * 22 20 19 41 41 H 1.08996 * 110.24757 * 144.41325 * 23 22 20 42 42 H 1.08994 * 110.24361 * 266.32731 * 23 22 20 43 43 H 0.96997 * 124.34888 * 162.97733 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 1.2687 5 6 1.0065 2.7823 1.7037 6 1 0.1155 2.7248 1.0961 7 6 0.9932 3.5006 2.8805 8 7 2.0781 3.5703 3.6206 9 14 -0.5657 4.3748 3.4235 10 1 -1.6555 3.3811 3.5975 11 1 -0.3196 5.0709 4.7121 12 1 -0.9612 5.3678 2.3927 13 6 2.2428 2.0166 -1.1672 14 8 2.6466 3.1602 -1.1672 15 6 1.9922 1.3060 -2.4724 16 8 2.3060 2.1958 -3.5760 17 6 2.1359 1.7118 -4.8163 18 8 1.7374 0.5821 -4.9747 19 6 2.4417 2.5773 -6.0114 20 6 2.1645 1.7914 -7.2946 21 1 1.1469 1.4008 -7.2893 22 6 2.3951 2.6838 -8.5362 23 6 3.8605 2.3514 -8.8951 24 7 4.0994 1.0061 -8.3594 25 6 3.1628 0.6658 -7.4523 26 8 3.1244 -0.3862 -6.8502 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.0643 2.7986 1.1383 33 1 2.5505 1.3453 2.0283 34 1 2.0689 4.0760 4.4484 35 1 2.6228 0.4188 -2.5299 36 1 0.9444 1.0114 -2.5302 37 1 1.8116 3.4664 -5.9871 38 1 3.4902 2.8742 -5.9862 39 1 1.7221 2.4053 -9.3471 40 1 2.2848 3.7386 -8.2845 41 1 3.9942 2.3558 -9.9768 42 1 4.5351 3.0696 -8.4293 43 1 4.8367 0.4344 -8.6245 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884922752.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:12 Heat of formation + Delta-G solvation = -181.121542 kcal Electronic energy + Delta-G solvation = -26124.565192 eV Core-core repulsion = 22168.991057 eV Total energy + Delta-G solvation = -3955.574135 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.00927 -41.13573 -40.39820 -37.61837 -37.41450 -36.98288 -34.88718 -33.95431 -31.70685 -30.91121 -29.90850 -28.50097 -27.02057 -24.75352 -24.22824 -22.69424 -22.40725 -20.80648 -20.26954 -19.00719 -18.74138 -18.24658 -18.05979 -17.86897 -17.40626 -17.02055 -16.47240 -16.44604 -15.83925 -15.79921 -14.95994 -14.85690 -14.62917 -14.56421 -14.36406 -14.01031 -13.94720 -13.71786 -13.47664 -13.43699 -13.30175 -13.07054 -13.02119 -12.71951 -12.54360 -12.23267 -12.21499 -11.93868 -11.91953 -11.76296 -11.66116 -11.57390 -10.75453 -10.72653 -10.62228 -9.99368 -9.56762 -8.21544 -6.34712 1.17515 1.26807 1.37661 1.41559 1.48632 1.58713 1.61413 2.33019 2.45474 2.48821 3.08552 3.37224 3.41443 3.48074 3.68074 3.80122 3.94504 4.00279 4.14237 4.18023 4.28182 4.40975 4.49665 4.55228 4.57310 4.80615 4.86662 4.90836 4.95001 5.02343 5.13722 5.19500 5.22258 5.36205 5.44394 5.56812 5.79696 5.96501 6.05791 6.05927 6.55313 6.70369 6.73116 7.20208 7.32434 7.37517 8.86157 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.025390 B = 0.002690 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.544049 B =10408.213295 C =10801.751266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.098 3.902 3 N -0.596 5.596 4 C 0.261 3.739 5 C -0.537 4.537 6 H 0.057 0.943 7 C 0.008 3.992 8 N -0.929 5.929 9 Si 0.965 3.035 10 H -0.261 1.261 11 H -0.279 1.279 12 H -0.277 1.277 13 C 0.501 3.499 14 O -0.575 6.575 15 C 0.063 3.937 16 O -0.352 6.352 17 C 0.440 3.560 18 O -0.510 6.510 19 C -0.091 4.091 20 C -0.114 4.114 21 H 0.105 0.895 22 C -0.116 4.116 23 C 0.093 3.907 24 N -0.731 5.731 25 C 0.501 3.499 26 O -0.567 6.567 27 H 0.047 0.953 28 H 0.048 0.952 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.001 0.999 33 H 0.029 0.971 34 H 0.267 0.733 35 H 0.111 0.889 36 H 0.113 0.887 37 H 0.155 0.845 38 H 0.124 0.876 39 H 0.101 0.899 40 H 0.126 0.874 41 H 0.107 0.893 42 H 0.090 0.910 43 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.444 -3.022 -27.275 27.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.024 4.024 3 N -0.328 5.328 4 C 0.140 3.860 5 C -0.576 4.576 6 H 0.075 0.925 7 C -0.191 4.191 8 N -0.569 5.569 9 Si 0.790 3.210 10 H -0.186 1.186 11 H -0.204 1.204 12 H -0.203 1.203 13 C 0.289 3.711 14 O -0.455 6.455 15 C -0.013 4.013 16 O -0.268 6.268 17 C 0.283 3.717 18 O -0.397 6.397 19 C -0.128 4.128 20 C -0.136 4.136 21 H 0.123 0.877 22 C -0.154 4.154 23 C -0.030 4.030 24 N -0.387 5.387 25 C 0.287 3.713 26 O -0.445 6.445 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.112 0.888 30 H 0.115 0.885 31 H 0.105 0.895 32 H 0.019 0.981 33 H 0.047 0.953 34 H 0.076 0.924 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.173 0.827 38 H 0.142 0.858 39 H 0.120 0.880 40 H 0.144 0.856 41 H 0.125 0.875 42 H 0.108 0.892 43 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 0.498 -3.195 -26.769 26.963 hybrid contribution -0.169 -0.109 0.904 0.926 sum 0.329 -3.304 -25.865 26.077 Atomic orbital electron populations 1.22170 0.95124 1.03115 1.01871 1.21845 0.95604 0.80780 1.04141 1.48218 1.63678 1.15113 1.05788 1.18854 0.95831 0.91764 0.79550 1.21648 0.97806 1.31770 1.06330 0.92520 1.25837 0.99871 0.96925 0.96489 1.70045 1.29607 1.42503 1.14734 0.85501 0.79385 0.78782 0.77356 1.18575 1.20424 1.20257 1.20488 0.78393 0.86532 0.85736 1.90664 1.47511 1.19565 1.87741 1.22716 1.04158 0.92079 0.82391 1.86555 1.79444 1.45463 1.15320 1.24723 0.74572 0.87673 0.84744 1.90783 1.42085 1.20395 1.86410 1.21464 1.07397 0.98528 0.85412 1.21861 1.00398 0.95302 0.96037 0.87714 1.22796 0.96140 1.01656 0.94777 1.22425 0.97261 0.82044 1.01305 1.46466 1.29404 1.19982 1.42827 1.21452 0.83640 0.87739 0.78487 1.90787 1.76050 1.28229 1.49425 0.93415 0.93253 0.88846 0.88482 0.89481 0.98128 0.95269 0.92421 0.87089 0.86955 0.82749 0.85757 0.88008 0.85584 0.87527 0.89212 0.74865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.94 10.24 71.98 0.74 -4.20 16 2 C 0.10 3.14 5.98 86.37 0.52 3.66 16 3 N -0.60 -26.04 2.46 -826.15 -2.03 -28.07 16 4 C 0.26 14.18 5.20 85.64 0.45 14.62 16 5 C -0.54 -30.86 8.92 25.60 0.23 -30.63 16 6 H 0.06 3.21 7.42 -2.91 -0.02 3.19 16 7 C 0.01 0.44 5.46 84.66 0.46 0.90 16 8 N -0.93 -56.32 13.29 21.45 0.28 -56.03 16 9 Si 0.97 44.98 29.54 68.60 2.03 47.01 16 10 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 11 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 12 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 13 C 0.50 22.25 7.75 87.66 0.68 22.93 16 14 O -0.58 -31.24 16.08 15.77 0.25 -30.99 16 15 C 0.06 2.17 4.50 71.24 0.32 2.49 16 16 O -0.35 -11.92 9.75 -45.03 -0.44 -12.36 16 17 C 0.44 12.40 7.75 71.24 0.55 12.95 16 18 O -0.51 -17.27 13.58 28.81 0.39 -16.88 16 19 C -0.09 -1.43 5.22 29.85 0.16 -1.27 16 20 C -0.11 -1.65 2.55 -10.80 -0.03 -1.67 16 21 H 0.10 1.76 7.96 -2.39 -0.02 1.74 16 22 C -0.12 -0.42 6.71 31.66 0.21 -0.21 16 23 C 0.09 0.34 7.78 86.84 0.68 1.02 16 24 N -0.73 -9.22 6.25 -459.37 -2.87 -12.09 16 25 C 0.50 11.01 7.44 87.85 0.65 11.66 16 26 O -0.57 -19.47 16.03 17.57 0.28 -19.19 16 27 H 0.05 1.73 7.26 -2.39 -0.02 1.71 16 28 H 0.05 1.45 7.22 -2.39 -0.02 1.44 16 29 H 0.09 2.12 8.14 -2.38 -0.02 2.10 16 30 H 0.10 2.46 6.44 -2.39 -0.02 2.44 16 31 H 0.09 2.67 7.89 -2.39 -0.02 2.65 16 32 H 0.00 0.04 7.42 -2.38 -0.02 0.02 16 33 H 0.03 1.60 7.89 -2.39 -0.02 1.58 16 34 H 0.27 15.21 8.31 -92.70 -0.77 14.44 16 35 H 0.11 3.37 7.39 -2.39 -0.02 3.35 16 36 H 0.11 3.43 7.18 -2.39 -0.02 3.42 16 37 H 0.15 1.42 8.13 -2.39 -0.02 1.40 16 38 H 0.12 1.60 8.14 -2.38 -0.02 1.58 16 39 H 0.10 0.18 8.14 -2.39 -0.02 0.16 16 40 H 0.13 -0.18 7.90 -2.39 -0.02 -0.20 16 41 H 0.11 -0.08 8.14 -2.39 -0.02 -0.10 16 42 H 0.09 0.13 8.14 -2.39 -0.02 0.11 16 43 H 0.41 4.48 8.96 -92.71 -0.83 3.65 16 Total: -1.00 -90.20 361.88 3.71 -86.48 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: 0.20 Total: 9.88 kcal Atomic # 6 Polarization: 26.62 SS G_CDS: 5.61 Total: 32.23 kcal Atomic # 7 Polarization: -91.58 SS G_CDS: -4.61 Total: -96.19 kcal Atomic # 8 Polarization: -79.91 SS G_CDS: 0.49 Total: -79.42 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -90.20 3.71 -86.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884922752.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.637 kcal (2) G-P(sol) polarization free energy of solvation -90.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds