Wall clock time and date at job start Fri Apr 10 2020 18:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08992 * 109.47404 * 2 1 4 4 O 1.45198 * 109.46767 * 120.00039 * 2 1 3 5 5 C 1.34228 * 117.00315 * 269.99870 * 4 2 1 6 6 O 1.20835 * 119.99555 * 0.02562 * 5 4 2 7 7 C 1.50690 * 120.00597 * 180.02562 * 5 4 2 8 8 C 1.52996 * 109.47602 * 180.02562 * 7 5 4 9 9 H 1.09003 * 110.43650 * 54.29504 * 8 7 5 10 10 C 1.54629 * 110.49182 * 176.84374 * 8 7 5 11 11 C 1.54482 * 101.76726 * 93.87484 * 10 8 7 12 12 N 1.46767 * 105.47018 * 25.42022 * 11 10 8 13 13 C 1.34740 * 111.35103 * 343.01643 * 12 11 10 14 14 O 1.21284 * 125.11801 * 180.39208 * 13 12 11 15 15 C 1.50700 * 109.46769 * 239.99760 * 2 1 3 16 16 O 1.21281 * 119.99959 * 256.02162 * 15 2 1 17 17 N 1.34778 * 119.99806 * 76.03331 * 15 2 1 18 18 C 1.46494 * 120.00128 * 5.36099 * 17 15 2 19 19 C 1.46499 * 119.99700 * 185.35729 * 17 15 2 20 20 C 1.50702 * 109.46860 * 89.99917 * 19 17 15 21 21 H 1.07999 * 120.00293 * 0.02562 * 20 19 17 22 22 C 1.37886 * 120.00009 * 179.97438 * 20 19 17 23 23 N 1.31512 * 119.99899 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 119.99761 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.47675 * 89.99696 * 24 22 20 26 26 H 1.48501 * 109.46849 * 209.99988 * 24 22 20 27 27 H 1.48503 * 109.47182 * 329.99508 * 24 22 20 28 28 H 1.09003 * 109.47298 * 306.13991 * 1 2 3 29 29 H 1.08997 * 109.47061 * 186.13631 * 1 2 3 30 30 H 1.09000 * 109.46859 * 66.13778 * 1 2 3 31 31 H 1.09003 * 109.47180 * 300.00184 * 7 5 4 32 32 H 1.09002 * 109.47103 * 59.99618 * 7 5 4 33 33 H 1.08997 * 110.97195 * 212.00053 * 10 8 7 34 34 H 1.09007 * 110.96432 * 335.75667 * 10 8 7 35 35 H 1.09001 * 110.24321 * 144.41638 * 11 10 8 36 36 H 1.08991 * 110.24550 * 266.41898 * 11 10 8 37 37 H 0.97004 * 124.34395 * 162.97674 * 12 11 10 38 38 H 1.08998 * 109.47479 * 84.82343 * 18 17 15 39 39 H 1.09002 * 109.47016 * 204.82429 * 18 17 15 40 40 H 1.09000 * 109.46810 * 324.81906 * 18 17 15 41 41 H 1.09003 * 109.47348 * 209.99678 * 19 17 15 42 42 H 1.09008 * 109.47508 * 330.00271 * 19 17 15 43 43 H 0.96998 * 119.99785 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6845 1.1856 5 6 2.2171 0.0639 2.2812 6 8 1.9974 1.2517 2.2506 7 6 2.7192 -0.5770 3.5492 8 6 2.8631 0.4889 4.6372 9 1 1.9262 1.0311 4.7652 10 6 3.3018 -0.1561 5.9723 11 6 4.8375 -0.0014 5.9073 12 7 5.0782 1.1486 5.0277 13 6 3.9855 1.4445 4.2970 14 8 3.9110 2.3430 3.4857 15 6 2.0323 -0.7105 -1.2305 16 8 2.4736 -1.8367 -1.1427 17 7 1.9913 -0.0942 -2.4284 18 6 1.5692 1.3058 -2.5178 19 6 2.3689 -0.8243 -3.6410 20 6 1.1507 -1.4919 -4.2252 21 1 0.1911 -1.3828 -3.7419 22 6 1.2610 -2.2411 -5.3775 23 7 0.1977 -2.8232 -5.8876 24 14 2.9206 -2.4291 -6.2140 25 1 3.6178 -3.6213 -5.6682 26 1 2.7217 -2.5980 -7.6759 27 1 3.7416 -1.2174 -5.9628 28 1 -0.3634 0.6061 0.8299 29 1 -0.3633 -1.0217 0.1098 30 1 -0.3633 0.4157 -0.9398 31 1 2.0103 -1.3373 3.8774 32 1 3.6883 -1.0401 3.3632 33 1 2.8905 0.3882 6.8223 34 1 3.0169 -1.2076 6.0096 35 1 5.2393 0.1937 6.9016 36 1 5.2896 -0.8993 5.4864 37 1 5.9165 1.6342 4.9788 38 1 2.4231 1.9557 -2.3267 39 1 1.1776 1.5042 -3.5155 40 1 0.7926 1.4991 -1.7777 41 1 2.7862 -0.1285 -4.3690 42 1 3.1137 -1.5806 -3.3928 43 1 0.2754 -3.3505 -6.6980 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884932952.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:16 Heat of formation + Delta-G solvation = -175.643245 kcal Electronic energy + Delta-G solvation = -26453.824556 eV Core-core repulsion = 22498.487978 eV Total energy + Delta-G solvation = -3955.336578 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.10892 -41.25022 -40.39606 -37.65910 -37.41660 -36.75515 -34.83427 -34.02435 -33.06594 -30.36570 -29.95454 -27.68423 -27.32839 -25.87934 -24.13941 -22.66012 -22.24212 -20.79004 -20.38415 -19.18788 -19.08266 -18.25378 -18.20660 -17.57131 -17.37447 -16.98678 -16.47358 -16.36848 -16.01157 -15.76587 -15.06003 -14.84274 -14.65978 -14.57600 -14.35279 -14.23661 -13.78717 -13.72067 -13.63136 -13.52468 -13.35523 -13.25499 -13.09627 -12.85186 -12.63620 -12.47059 -12.21662 -12.06148 -11.94272 -11.88902 -11.75830 -11.54804 -10.84467 -10.75290 -10.70443 -10.00073 -9.54387 -8.35291 -6.40981 1.14597 1.27907 1.34038 1.36682 1.45133 1.50736 1.59777 2.29968 2.32398 2.48462 2.98623 3.34295 3.36775 3.43476 3.67196 3.70748 3.80444 3.89884 4.17743 4.22526 4.26029 4.46957 4.52005 4.53474 4.56867 4.58486 4.73169 4.79985 4.81145 4.87991 4.90203 5.03600 5.13407 5.22061 5.37307 5.40897 5.50270 5.96109 6.05248 6.19934 6.44427 6.60184 6.69477 7.10161 7.25620 7.31800 8.81274 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.026294 B = 0.002830 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.607119 B = 9892.224582 C =10027.458074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.081 3.919 3 H 0.113 0.887 4 O -0.346 6.346 5 C 0.438 3.562 6 O -0.507 6.507 7 C -0.091 4.091 8 C -0.113 4.113 9 H 0.107 0.893 10 C -0.116 4.116 11 C 0.092 3.908 12 N -0.732 5.732 13 C 0.499 3.501 14 O -0.568 6.568 15 C 0.504 3.496 16 O -0.573 6.573 17 N -0.598 5.598 18 C 0.066 3.934 19 C 0.222 3.778 20 C -0.539 4.539 21 H 0.034 0.966 22 C 0.014 3.986 23 N -0.942 5.942 24 Si 0.946 3.054 25 H -0.275 1.275 26 H -0.273 1.273 27 H -0.240 1.240 28 H 0.093 0.907 29 H 0.065 0.935 30 H 0.089 0.911 31 H 0.158 0.842 32 H 0.121 0.879 33 H 0.102 0.898 34 H 0.127 0.873 35 H 0.107 0.893 36 H 0.088 0.912 37 H 0.412 0.588 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.056 0.944 42 H 0.021 0.979 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.844 6.893 27.632 29.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.023 3.977 3 H 0.130 0.870 4 O -0.263 6.263 5 C 0.281 3.719 6 O -0.394 6.394 7 C -0.128 4.128 8 C -0.135 4.135 9 H 0.125 0.875 10 C -0.153 4.153 11 C -0.031 4.031 12 N -0.388 5.388 13 C 0.285 3.715 14 O -0.445 6.445 15 C 0.291 3.709 16 O -0.452 6.452 17 N -0.331 5.331 18 C -0.075 4.075 19 C 0.101 3.899 20 C -0.577 4.577 21 H 0.053 0.947 22 C -0.184 4.184 23 N -0.582 5.582 24 Si 0.768 3.232 25 H -0.201 1.201 26 H -0.199 1.199 27 H -0.163 1.163 28 H 0.112 0.888 29 H 0.084 0.916 30 H 0.108 0.892 31 H 0.176 0.824 32 H 0.139 0.861 33 H 0.121 0.879 34 H 0.145 0.855 35 H 0.125 0.875 36 H 0.107 0.893 37 H 0.251 0.749 38 H 0.095 0.905 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.074 0.926 42 H 0.040 0.960 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.795 6.992 27.070 29.025 hybrid contribution 0.598 0.104 -1.145 1.296 sum 8.393 7.097 25.925 28.159 Atomic orbital electron populations 1.22128 0.90201 1.04058 1.04986 1.22416 0.97164 0.96791 0.81321 0.86964 1.86625 1.77208 1.42393 1.20065 1.24751 0.74735 0.86185 0.86211 1.90768 1.47439 1.16953 1.84247 1.21470 1.06009 0.99054 0.86295 1.21859 0.99028 0.95700 0.96895 0.87496 1.22796 0.94077 1.04519 0.93902 1.22436 0.97046 0.88203 0.95417 1.46485 1.14797 1.34680 1.42816 1.21503 0.86212 0.84172 0.79582 1.90791 1.83646 1.34309 1.35796 1.20624 0.78825 0.86341 0.85121 1.90633 1.47508 1.20674 1.86404 1.47835 1.65278 1.13766 1.06177 1.22165 1.01075 0.79507 1.04802 1.19461 0.95101 0.92664 0.82719 1.21515 0.94872 1.31751 1.09611 0.94737 1.25804 1.00888 0.94210 0.97503 1.70033 1.31472 1.34121 1.22539 0.85745 0.79439 0.80154 0.77822 1.20091 1.19855 1.16306 0.88784 0.91626 0.89243 0.82418 0.86144 0.87921 0.85495 0.87507 0.89346 0.74937 0.90527 0.89778 0.89691 0.92631 0.96049 0.92148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.67 9.19 71.98 0.66 -4.00 16 2 C 0.08 2.85 2.14 29.85 0.06 2.91 16 3 H 0.11 3.69 6.31 -2.39 -0.02 3.68 16 4 O -0.35 -11.69 9.47 -45.20 -0.43 -12.11 16 5 C 0.44 12.25 7.72 71.23 0.55 12.80 16 6 O -0.51 -16.97 13.05 28.80 0.38 -16.59 16 7 C -0.09 -1.40 5.22 29.84 0.16 -1.25 16 8 C -0.11 -1.59 2.55 -10.80 -0.03 -1.62 16 9 H 0.11 1.71 7.96 -2.39 -0.02 1.69 16 10 C -0.12 -0.38 6.71 31.65 0.21 -0.16 16 11 C 0.09 0.35 7.78 86.83 0.68 1.03 16 12 N -0.73 -9.52 6.25 -459.36 -2.87 -12.39 16 13 C 0.50 11.09 7.44 87.85 0.65 11.74 16 14 O -0.57 -19.70 16.03 17.54 0.28 -19.42 16 15 C 0.50 22.39 6.95 87.66 0.61 23.00 16 16 O -0.57 -30.53 16.13 15.23 0.25 -30.29 16 17 N -0.60 -25.76 2.86 -851.13 -2.43 -28.19 16 18 C 0.07 2.08 9.79 127.77 1.25 3.33 16 19 C 0.22 11.10 4.25 85.63 0.36 11.46 16 20 C -0.54 -31.82 9.94 25.60 0.25 -31.56 16 21 H 0.03 2.25 8.06 -2.91 -0.02 2.23 16 22 C 0.01 0.85 5.47 84.66 0.46 1.32 16 23 N -0.94 -59.37 13.96 21.45 0.30 -59.07 16 24 Si 0.95 44.59 27.47 68.60 1.88 46.48 16 25 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 26 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 27 H -0.24 -10.23 6.54 99.48 0.65 -9.57 16 28 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.09 2.59 6.33 -2.39 -0.02 2.58 16 31 H 0.16 1.25 8.13 -2.39 -0.02 1.23 16 32 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.10 0.12 8.14 -2.39 -0.02 0.10 16 34 H 0.13 -0.26 7.90 -2.38 -0.02 -0.28 16 35 H 0.11 -0.07 8.14 -2.39 -0.02 -0.09 16 36 H 0.09 0.15 8.14 -2.39 -0.02 0.13 16 37 H 0.41 4.72 8.96 -92.71 -0.83 3.89 16 38 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.08 2.62 8.03 -2.39 -0.02 2.60 16 40 H 0.08 2.28 4.92 -2.39 -0.01 2.27 16 41 H 0.06 2.53 7.13 -2.39 -0.02 2.51 16 42 H 0.02 1.15 6.78 -2.38 -0.02 1.13 16 43 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 Total: -1.00 -92.87 356.92 3.40 -89.48 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: 0.15 Total: 13.11 kcal Atomic # 6 Polarization: 23.10 SS G_CDS: 5.89 Total: 28.99 kcal Atomic # 7 Polarization: -94.64 SS G_CDS: -5.00 Total: -99.64 kcal Atomic # 8 Polarization: -78.89 SS G_CDS: 0.47 Total: -78.42 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.88 Total: 46.48 kcal Total: -92.87 3.40 -89.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884932952.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.164 kcal (2) G-P(sol) polarization free energy of solvation -92.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds