Wall clock time and date at job start Fri Apr 10 2020 18:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47606 * 2 1 4 4 O 1.45202 * 109.46667 * 240.00239 * 2 1 3 5 5 C 1.34230 * 116.99742 * 90.00292 * 4 2 1 6 6 O 1.20824 * 120.00359 * 359.97438 * 5 4 2 7 7 C 1.50701 * 120.00046 * 179.97438 * 5 4 2 8 8 C 1.53001 * 109.47177 * 179.97438 * 7 5 4 9 9 H 1.09001 * 110.43250 * 54.30260 * 8 7 5 10 10 C 1.54630 * 110.48447 * 176.84001 * 8 7 5 11 11 C 1.54486 * 101.76433 * 93.88399 * 10 8 7 12 12 N 1.46759 * 105.47354 * 25.41364 * 11 10 8 13 13 C 1.34747 * 111.35404 * 343.01693 * 12 11 10 14 14 O 1.21276 * 125.12881 * 180.37190 * 13 12 11 15 15 C 1.50703 * 109.47302 * 120.00746 * 2 1 3 16 16 O 1.21280 * 120.00194 * 104.53582 * 15 2 1 17 17 N 1.34779 * 119.99635 * 284.54070 * 15 2 1 18 18 C 1.46497 * 119.99924 * 354.64680 * 17 15 2 19 19 C 1.46500 * 119.99655 * 174.65600 * 17 15 2 20 20 C 1.50701 * 109.47301 * 89.99836 * 19 17 15 21 21 H 1.08004 * 119.99779 * 359.97438 * 20 19 17 22 22 C 1.37871 * 120.00052 * 179.72414 * 20 19 17 23 23 N 1.31512 * 120.00027 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00116 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47135 * 89.99951 * 24 22 20 26 26 H 1.48504 * 109.47027 * 209.99710 * 24 22 20 27 27 H 1.48497 * 109.46917 * 329.99393 * 24 22 20 28 28 H 1.09006 * 109.46580 * 294.89335 * 1 2 3 29 29 H 1.08996 * 109.46871 * 54.89009 * 1 2 3 30 30 H 1.08996 * 109.47171 * 174.89670 * 1 2 3 31 31 H 1.08994 * 109.47172 * 300.00191 * 7 5 4 32 32 H 1.09003 * 109.47311 * 59.99837 * 7 5 4 33 33 H 1.08999 * 110.96928 * 211.99750 * 10 8 7 34 34 H 1.09004 * 110.97264 * 335.76670 * 10 8 7 35 35 H 1.08991 * 110.24935 * 144.41589 * 11 10 8 36 36 H 1.09006 * 110.24396 * 266.32911 * 11 10 8 37 37 H 0.97002 * 124.35078 * 162.98417 * 12 11 10 38 38 H 1.08998 * 109.47690 * 275.12143 * 18 17 15 39 39 H 1.08995 * 109.47017 * 35.12229 * 18 17 15 40 40 H 1.09001 * 109.47137 * 155.12187 * 18 17 15 41 41 H 1.09003 * 109.47081 * 329.99412 * 19 17 15 42 42 H 1.09004 * 109.46804 * 209.99627 * 19 17 15 43 43 H 0.97000 * 120.00212 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0139 -0.6845 -1.1856 5 6 2.2171 0.0641 -2.2811 6 8 1.9974 1.2518 -2.2506 7 6 2.7191 -0.5768 -3.5493 8 6 2.8630 0.4893 -4.6372 9 1 3.4900 1.3090 -4.2862 10 6 3.4522 -0.1290 -5.9262 11 6 2.1743 -0.4736 -6.7229 12 7 1.1456 0.4509 -6.2320 13 6 1.5039 1.0044 -5.0568 14 8 0.8370 1.7978 -4.4270 15 6 2.0324 -0.7106 1.2304 16 8 2.4831 -1.8330 1.1409 17 7 1.9808 -0.0987 2.4302 18 6 1.5465 1.2974 2.5223 19 6 2.3590 -0.8298 3.6421 20 6 3.8336 -0.6514 3.8967 21 1 4.4295 -0.0536 3.2229 22 6 4.4210 -1.2471 4.9926 23 7 3.6943 -1.9705 5.8161 24 14 6.2489 -1.0265 5.3079 25 1 6.4637 0.1732 6.1562 26 1 6.7795 -2.2263 6.0038 27 1 6.9567 -0.8513 4.0142 28 1 -0.3633 0.4326 0.9323 29 1 -0.3633 0.5910 -0.8407 30 1 -0.3633 -1.0235 -0.0914 31 1 3.6882 -1.0398 -3.3634 32 1 2.0103 -1.3370 -3.8775 33 1 4.0628 0.5969 -6.4633 34 1 4.0257 -1.0282 -5.7008 35 1 2.3414 -0.3202 -7.7889 36 1 1.8779 -1.5052 -6.5327 37 1 0.3141 0.6402 -6.6943 38 1 2.3960 1.9551 2.3384 39 1 0.7726 1.4870 1.7787 40 1 1.1478 1.4889 3.5186 41 1 2.1385 -1.8892 3.5111 42 1 1.7944 -0.4433 4.4906 43 1 4.1074 -2.3893 6.5873 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884932954.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:25 Heat of formation + Delta-G solvation = -178.063777 kcal Electronic energy + Delta-G solvation = -26411.850688 eV Core-core repulsion = 22456.409148 eV Total energy + Delta-G solvation = -3955.441540 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.10208 -41.22640 -40.35263 -37.64733 -37.40813 -36.69095 -34.88941 -34.01534 -32.97103 -30.06381 -29.65891 -27.63222 -27.32292 -26.02482 -24.36761 -22.67181 -22.25674 -20.80119 -20.39779 -19.10130 -18.72161 -18.26192 -18.17397 -17.49451 -17.34785 -17.00508 -16.55682 -16.34069 -15.91145 -15.74247 -15.04121 -14.80718 -14.67009 -14.54653 -14.35262 -13.99600 -13.72817 -13.70576 -13.54098 -13.49511 -13.37581 -13.15111 -13.00583 -12.82604 -12.67118 -12.52750 -12.22972 -12.22517 -11.93306 -11.90381 -11.74474 -11.55212 -10.73952 -10.65215 -10.63492 -9.98981 -9.55584 -8.24382 -6.38761 1.14360 1.27809 1.36532 1.39086 1.49875 1.57757 1.63545 2.30093 2.43236 2.48491 3.05361 3.36169 3.38448 3.44119 3.66331 3.71302 3.82576 3.89484 4.16643 4.22796 4.25958 4.46396 4.52161 4.52326 4.57262 4.63471 4.79708 4.81969 4.90432 4.93816 5.02357 5.12579 5.15253 5.21375 5.38966 5.50699 5.76479 5.96385 6.02581 6.06288 6.52415 6.69003 6.70289 7.17747 7.32984 7.34330 8.83057 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.022616 B = 0.002902 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.768616 B = 9644.702568 C =10264.042138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.080 3.920 3 H 0.109 0.891 4 O -0.347 6.347 5 C 0.438 3.562 6 O -0.508 6.508 7 C -0.091 4.091 8 C -0.116 4.116 9 H 0.100 0.900 10 C -0.118 4.118 11 C 0.094 3.906 12 N -0.730 5.730 13 C 0.503 3.497 14 O -0.565 6.565 15 C 0.502 3.498 16 O -0.573 6.573 17 N -0.601 5.601 18 C 0.070 3.930 19 C 0.260 3.740 20 C -0.546 4.546 21 H 0.049 0.951 22 C 0.010 3.990 23 N -0.926 5.926 24 Si 0.968 3.032 25 H -0.263 1.263 26 H -0.278 1.278 27 H -0.275 1.275 28 H 0.100 0.900 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.149 0.851 32 H 0.129 0.871 33 H 0.100 0.900 34 H 0.124 0.876 35 H 0.107 0.893 36 H 0.091 0.909 37 H 0.414 0.586 38 H 0.058 0.942 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.002 0.998 42 H 0.034 0.966 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.350 3.948 -27.014 27.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.022 3.978 3 H 0.127 0.873 4 O -0.264 6.264 5 C 0.281 3.719 6 O -0.395 6.395 7 C -0.128 4.128 8 C -0.138 4.138 9 H 0.119 0.881 10 C -0.155 4.155 11 C -0.029 4.029 12 N -0.386 5.386 13 C 0.289 3.711 14 O -0.442 6.442 15 C 0.289 3.711 16 O -0.452 6.452 17 N -0.333 5.333 18 C -0.072 4.072 19 C 0.139 3.861 20 C -0.585 4.585 21 H 0.067 0.933 22 C -0.190 4.190 23 N -0.566 5.566 24 Si 0.792 3.208 25 H -0.188 1.188 26 H -0.203 1.203 27 H -0.199 1.199 28 H 0.119 0.881 29 H 0.099 0.901 30 H 0.089 0.911 31 H 0.167 0.833 32 H 0.147 0.853 33 H 0.118 0.882 34 H 0.143 0.857 35 H 0.125 0.875 36 H 0.110 0.890 37 H 0.252 0.748 38 H 0.077 0.923 39 H 0.111 0.889 40 H 0.105 0.895 41 H 0.020 0.980 42 H 0.052 0.948 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.438 4.020 -26.460 26.983 hybrid contribution 0.295 0.280 0.638 0.757 sum -3.143 4.299 -25.821 26.365 Atomic orbital electron populations 1.22140 0.89956 1.04136 1.05042 1.22455 0.97361 0.96707 0.81311 0.87305 1.86618 1.77236 1.42453 1.20044 1.24742 0.74627 0.86329 0.86217 1.90763 1.47454 1.17312 1.83973 1.21456 1.06692 0.98661 0.86006 1.21857 0.95373 0.99341 0.97185 0.88139 1.22795 0.97280 1.03779 0.91650 1.22412 0.86330 0.93681 1.00460 1.46435 1.23449 1.45813 1.22859 1.21358 0.88711 0.79882 0.81148 1.90785 1.59838 1.35606 1.57992 1.20586 0.79068 0.86468 0.84969 1.90651 1.46917 1.21558 1.86061 1.48075 1.64436 1.14129 1.06677 1.22119 1.00365 0.80102 1.04632 1.18899 0.94812 0.91224 0.81116 1.21663 0.95049 1.31983 1.09765 0.93262 1.25833 1.03348 0.94319 0.95461 1.70033 1.37985 1.33530 1.15044 0.85409 0.78901 0.78252 0.78218 1.18823 1.20293 1.19948 0.88117 0.90072 0.91097 0.83334 0.85320 0.88157 0.85732 0.87515 0.89040 0.74761 0.92325 0.88895 0.89527 0.97951 0.94770 0.92250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.41 9.20 71.98 0.66 -3.74 16 2 C 0.08 2.83 2.14 29.85 0.06 2.89 16 3 H 0.11 3.69 6.34 -2.39 -0.02 3.68 16 4 O -0.35 -12.10 9.46 -45.20 -0.43 -12.53 16 5 C 0.44 12.89 7.72 71.24 0.55 13.44 16 6 O -0.51 -17.77 13.05 28.83 0.38 -17.40 16 7 C -0.09 -1.53 5.22 29.85 0.16 -1.38 16 8 C -0.12 -1.79 2.55 -10.80 -0.03 -1.82 16 9 H 0.10 1.88 7.96 -2.39 -0.02 1.86 16 10 C -0.12 -0.54 6.71 31.65 0.21 -0.32 16 11 C 0.09 0.35 7.78 86.84 0.68 1.03 16 12 N -0.73 -8.95 6.25 -459.36 -2.87 -11.82 16 13 C 0.50 11.04 7.44 87.85 0.65 11.70 16 14 O -0.56 -19.17 16.03 17.56 0.28 -18.89 16 15 C 0.50 22.73 6.95 87.66 0.61 23.34 16 16 O -0.57 -31.51 16.21 15.27 0.25 -31.26 16 17 N -0.60 -26.76 2.86 -851.13 -2.43 -29.19 16 18 C 0.07 2.25 9.84 127.77 1.26 3.51 16 19 C 0.26 14.27 5.16 85.63 0.44 14.71 16 20 C -0.55 -32.21 9.39 25.60 0.24 -31.97 16 21 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16 22 C 0.01 0.56 5.46 84.65 0.46 1.02 16 23 N -0.93 -56.16 13.29 21.44 0.28 -55.88 16 24 Si 0.97 45.44 29.54 68.60 2.03 47.47 16 25 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 26 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 27 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 28 H 0.10 2.47 6.24 -2.38 -0.01 2.46 16 29 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.15 1.71 8.13 -2.39 -0.02 1.69 16 32 H 0.13 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.10 0.29 8.14 -2.39 -0.02 0.27 16 34 H 0.12 -0.03 7.90 -2.39 -0.02 -0.05 16 35 H 0.11 -0.08 8.14 -2.39 -0.02 -0.10 16 36 H 0.09 0.09 8.14 -2.38 -0.02 0.08 16 37 H 0.41 4.23 8.96 -92.71 -0.83 3.40 16 38 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.09 2.35 4.86 -2.39 -0.01 2.34 16 40 H 0.09 2.60 7.84 -2.39 -0.02 2.58 16 41 H 0.00 0.15 7.50 -2.39 -0.02 0.13 16 42 H 0.03 1.86 7.86 -2.38 -0.02 1.84 16 43 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -90.59 360.27 3.65 -86.94 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: 0.21 Total: 10.16 kcal Atomic # 6 Polarization: 26.44 SS G_CDS: 5.96 Total: 32.39 kcal Atomic # 7 Polarization: -91.87 SS G_CDS: -5.02 Total: -96.89 kcal Atomic # 8 Polarization: -80.55 SS G_CDS: 0.48 Total: -80.07 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -90.59 3.65 -86.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884932954.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.120 kcal (2) G-P(sol) polarization free energy of solvation -90.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds