Wall clock time and date at job start Fri Apr 10 2020 18:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.46870 * 2 1 4 4 O 1.45200 * 109.47357 * 239.99553 * 2 1 3 5 5 C 1.34234 * 116.99585 * 89.99978 * 4 2 1 6 6 O 1.20821 * 120.00041 * 0.02562 * 5 4 2 7 7 C 1.50697 * 119.99845 * 180.02562 * 5 4 2 8 8 H 1.09002 * 110.85729 * 300.70166 * 7 5 4 9 9 C 1.54630 * 110.97134 * 64.49053 * 7 5 4 10 10 C 1.51343 * 104.16485 * 142.89056 * 9 7 5 11 11 O 1.21284 * 124.92597 * 163.79928 * 10 9 7 12 12 N 1.34413 * 110.13127 * 343.80055 * 10 9 7 13 13 C 1.46505 * 124.34769 * 179.58377 * 12 10 9 14 14 C 1.46760 * 111.30395 * 359.55880 * 12 10 9 15 15 C 1.50702 * 109.46986 * 119.99654 * 2 1 3 16 16 O 1.21290 * 119.99879 * 105.65089 * 15 2 1 17 17 N 1.34774 * 119.99979 * 285.65336 * 15 2 1 18 18 C 1.46504 * 119.99690 * 183.80013 * 17 15 2 19 19 C 1.46501 * 120.00231 * 3.79647 * 17 15 2 20 20 C 1.50700 * 109.46914 * 95.30138 * 19 17 15 21 21 H 1.08005 * 120.00034 * 359.97438 * 20 19 17 22 22 C 1.37874 * 120.00032 * 180.02562 * 20 19 17 23 23 N 1.31521 * 119.99657 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00140 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47464 * 269.99620 * 24 22 20 26 26 H 1.48500 * 109.47142 * 29.99789 * 24 22 20 27 27 H 1.48509 * 109.47176 * 149.99918 * 24 22 20 28 28 H 1.09001 * 109.47246 * 181.81181 * 1 2 3 29 29 H 1.08995 * 109.47462 * 301.81454 * 1 2 3 30 30 H 1.09005 * 109.47037 * 61.81626 * 1 2 3 31 31 H 1.08999 * 110.48660 * 261.59631 * 9 7 5 32 32 H 1.09004 * 110.48402 * 24.24202 * 9 7 5 33 33 H 1.08998 * 109.47144 * 269.97225 * 13 12 10 34 34 H 1.08998 * 109.46947 * 29.97490 * 13 12 10 35 35 H 1.09001 * 109.47284 * 149.97325 * 13 12 10 36 36 H 1.09002 * 110.24818 * 258.01996 * 14 12 10 37 37 H 1.08997 * 110.32191 * 136.05408 * 14 12 10 38 38 H 1.09001 * 109.47063 * 273.86360 * 18 17 15 39 39 H 1.09000 * 109.47008 * 33.86431 * 18 17 15 40 40 H 1.08999 * 109.46920 * 153.86653 * 18 17 15 41 41 H 1.08995 * 109.46642 * 335.29920 * 19 17 15 42 42 H 1.09002 * 109.46798 * 215.29731 * 19 17 15 43 43 H 0.97006 * 119.99629 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0141 -0.6846 -1.1855 5 6 2.2172 0.0639 -2.2811 6 8 1.9982 1.2518 -2.2503 7 6 2.7183 -0.5773 -3.5494 8 1 3.6822 -1.0594 -3.3859 9 6 1.6844 -1.5827 -4.1072 10 6 1.7801 -1.4178 -5.6086 11 8 1.3460 -2.2051 -6.4227 12 7 2.4160 -0.2722 -5.9085 13 6 2.6865 0.1905 -7.2720 14 6 2.8041 0.4558 -4.6947 15 6 2.0323 -0.7103 1.2305 16 8 2.5016 -1.8250 1.1382 17 7 1.9600 -0.1071 2.4336 18 6 2.5235 -0.7623 3.6165 19 6 1.3180 1.2038 2.5583 20 6 -0.1196 1.0217 2.9719 21 1 -0.5156 0.0288 3.1260 22 6 -0.9297 2.1226 3.1526 23 7 -0.4476 3.3318 2.9644 24 14 -2.7119 1.8969 3.6646 25 1 -3.5637 1.7790 2.4539 26 1 -2.8397 0.6637 4.4819 27 1 -3.1492 3.0689 4.4651 28 1 -0.3634 -1.0272 0.0325 29 1 -0.3634 0.5417 0.8732 30 1 -0.3633 0.4854 -0.9059 31 1 1.9466 -2.6001 -3.8170 32 1 0.6823 -1.3319 -3.7592 33 1 3.6533 -0.1911 -7.6001 34 1 1.9063 -0.1734 -7.9406 35 1 2.7010 1.2803 -7.2897 36 1 2.1140 1.2796 -4.5121 37 1 3.8229 0.8316 -4.7882 38 1 1.7824 -1.4363 4.0462 39 1 3.4086 -1.3305 3.3302 40 1 2.7988 -0.0077 4.3533 41 1 1.3576 1.7204 1.5993 42 1 1.8407 1.7941 3.3110 43 1 -1.0175 4.1063 3.0919 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000914805520.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:44 Heat of formation + Delta-G solvation = -145.333071 kcal Electronic energy + Delta-G solvation = -26639.782192 eV Core-core repulsion = 22685.759962 eV Total energy + Delta-G solvation = -3954.022230 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.21149 -40.12842 -38.99104 -36.83716 -36.14038 -35.15359 -33.38476 -32.70140 -31.46122 -28.11751 -27.81263 -27.31226 -26.40502 -24.47116 -23.26963 -22.72665 -20.52893 -19.79846 -18.80329 -18.18116 -17.13268 -16.94673 -16.56877 -16.36748 -15.86863 -15.69130 -15.50857 -14.87584 -14.72109 -14.28237 -14.05645 -13.84490 -13.75569 -13.22624 -13.06045 -12.75981 -12.73119 -12.57830 -12.28722 -12.07442 -11.98888 -11.89015 -11.69561 -11.63087 -11.46417 -11.02117 -10.97621 -10.84753 -10.58357 -10.45494 -10.21633 -10.05202 -9.87419 -9.12355 -9.05097 -8.66702 -7.88050 -6.31215 -4.38856 2.10683 2.30637 2.33117 2.77073 3.14374 3.16081 3.24429 3.28281 3.76398 3.89412 4.07822 4.22896 4.49176 4.54329 4.86598 4.94875 5.01208 5.02352 5.04352 5.17725 5.29416 5.37379 5.39516 5.47509 5.50595 5.55578 5.87860 6.06605 6.10858 6.13302 6.22916 6.31585 6.53552 6.61898 6.73338 6.90534 7.04449 7.33995 7.62470 7.71804 7.85724 7.88919 8.12407 8.62996 8.80238 9.27771 10.74834 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.017647 B = 0.003319 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.333186 B = 8433.034485 C = 9118.304234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.080 3.920 3 H 0.110 0.890 4 O -0.328 6.328 5 C 0.471 3.529 6 O -0.498 6.498 7 C -0.095 4.095 8 H 0.131 0.869 9 C -0.142 4.142 10 C 0.520 3.480 11 O -0.528 6.528 12 N -0.625 5.625 13 C 0.096 3.904 14 C 0.114 3.886 15 C 0.519 3.481 16 O -0.555 6.555 17 N -0.594 5.594 18 C 0.098 3.902 19 C 0.229 3.771 20 C -0.542 4.542 21 H 0.065 0.935 22 C 0.067 3.933 23 N -0.884 5.884 24 Si 0.896 3.104 25 H -0.277 1.277 26 H -0.272 1.272 27 H -0.284 1.284 28 H 0.060 0.940 29 H 0.133 0.867 30 H 0.059 0.941 31 H 0.120 0.880 32 H 0.113 0.887 33 H 0.058 0.942 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.050 0.950 39 H 0.060 0.940 40 H 0.069 0.931 41 H 0.042 0.958 42 H 0.039 0.961 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.094 -3.096 -12.473 14.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.023 3.977 3 H 0.128 0.872 4 O -0.244 6.244 5 C 0.312 3.688 6 O -0.385 6.385 7 C -0.115 4.115 8 H 0.149 0.851 9 C -0.182 4.182 10 C 0.308 3.692 11 O -0.405 6.405 12 N -0.360 5.360 13 C -0.045 4.045 14 C -0.009 4.009 15 C 0.305 3.695 16 O -0.435 6.435 17 N -0.326 5.326 18 C -0.045 4.045 19 C 0.109 3.891 20 C -0.581 4.581 21 H 0.083 0.917 22 C -0.137 4.137 23 N -0.521 5.521 24 Si 0.723 3.277 25 H -0.202 1.202 26 H -0.196 1.196 27 H -0.209 1.209 28 H 0.079 0.921 29 H 0.151 0.849 30 H 0.078 0.922 31 H 0.138 0.862 32 H 0.131 0.869 33 H 0.076 0.924 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.113 0.887 37 H 0.109 0.891 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.059 0.941 42 H 0.057 0.943 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.005 -3.480 -12.954 15.132 hybrid contribution -1.022 0.352 0.492 1.187 sum 5.983 -3.128 -12.463 14.174 Atomic orbital electron populations 1.22558 0.90886 1.03810 1.06630 1.22631 0.97076 0.96962 0.81010 0.87209 1.86539 1.76247 1.41766 1.19798 1.22953 0.74737 0.85746 0.85346 1.90706 1.47478 1.16262 1.84057 1.21847 1.02158 0.97428 0.90071 0.85082 1.22345 1.01213 1.01998 0.92674 1.20795 0.76757 0.80641 0.91000 1.90738 1.49028 1.45833 1.54856 1.48186 1.58325 1.22527 1.06937 1.21566 1.01686 1.00145 0.81126 1.22058 1.03040 0.94224 0.81566 1.19861 0.79108 0.86030 0.84500 1.90631 1.47141 1.19167 1.86530 1.48041 1.56210 1.22231 1.06086 1.21450 0.97955 0.97680 0.87372 1.19657 0.92873 0.77799 0.98786 1.21413 0.95129 0.93448 1.48062 0.91651 1.24971 0.99079 0.94935 0.94722 1.69921 1.36699 0.97914 1.47579 0.86511 0.84200 0.78004 0.78955 1.20241 1.19636 1.20949 0.92102 0.84886 0.92174 0.86194 0.86882 0.92370 0.90513 0.90721 0.88668 0.89062 0.93138 0.92141 0.91199 0.94057 0.94269 0.92237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.38 9.32 37.16 0.35 -3.03 16 2 C 0.08 1.52 2.14 -27.88 -0.06 1.46 16 3 H 0.11 2.12 5.78 -51.93 -0.30 1.82 16 4 O -0.33 -5.52 9.46 -45.79 -0.43 -5.95 16 5 C 0.47 6.64 7.15 36.00 0.26 6.90 16 6 O -0.50 -8.12 14.75 -18.75 -0.28 -8.39 16 7 C -0.10 -0.94 3.65 -90.14 -0.33 -1.27 16 8 H 0.13 1.02 8.14 -51.93 -0.42 0.60 16 9 C -0.14 -1.45 6.41 -26.71 -0.17 -1.63 16 10 C 0.52 6.22 8.02 -10.83 -0.09 6.14 16 11 O -0.53 -8.21 17.59 5.55 0.10 -8.11 16 12 N -0.62 -6.02 3.33 -180.26 -0.60 -6.62 16 13 C 0.10 0.70 10.96 59.85 0.66 1.35 16 14 C 0.11 0.99 6.69 -3.12 -0.02 0.97 16 15 C 0.52 10.75 7.00 -10.99 -0.08 10.67 16 16 O -0.56 -12.51 16.25 -13.66 -0.22 -12.73 16 17 N -0.59 -12.14 2.86 -182.95 -0.52 -12.66 16 18 C 0.10 1.73 10.40 59.85 0.62 2.35 16 19 C 0.23 5.13 4.71 -5.19 -0.02 5.10 16 20 C -0.54 -13.14 6.83 -34.44 -0.24 -13.38 16 21 H 0.07 1.61 7.81 -52.48 -0.41 1.20 16 22 C 0.07 1.68 5.46 -17.82 -0.10 1.58 16 23 N -0.88 -23.15 13.29 55.43 0.74 -22.41 16 24 Si 0.90 19.56 29.54 -169.99 -5.02 14.54 16 25 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 26 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 27 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 28 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.13 2.81 4.35 -51.93 -0.23 2.59 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.12 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.11 1.18 7.89 -51.93 -0.41 0.77 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.08 0.62 7.92 -51.93 -0.41 0.20 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.10 0.94 7.01 -51.93 -0.36 0.57 16 37 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.06 1.00 7.60 -51.93 -0.39 0.61 16 40 H 0.07 1.11 7.90 -51.93 -0.41 0.70 16 41 H 0.04 0.96 5.64 -51.93 -0.29 0.67 16 42 H 0.04 0.92 7.95 -51.93 -0.41 0.50 16 43 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 LS Contribution 360.43 15.07 5.43 5.43 Total: -1.00 -31.35 360.43 -6.18 -37.53 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -6.15 Total: 2.16 kcal Atomic # 6 Polarization: 16.43 SS G_CDS: 0.78 Total: 17.22 kcal Atomic # 7 Polarization: -41.30 SS G_CDS: -0.39 Total: -41.69 kcal Atomic # 8 Polarization: -34.35 SS G_CDS: -0.83 Total: -35.19 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.02 Total: 14.54 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.35 -6.18 -37.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914805520.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.802 kcal (2) G-P(sol) polarization free energy of solvation -31.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds