Wall clock time and date at job start Fri Apr 10 2020 18:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.46870 * 2 1 4 4 O 1.45200 * 109.47357 * 239.99553 * 2 1 3 5 5 C 1.34234 * 116.99585 * 89.99978 * 4 2 1 6 6 O 1.20821 * 120.00041 * 0.02562 * 5 4 2 7 7 C 1.50697 * 119.99845 * 180.02562 * 5 4 2 8 8 H 1.09002 * 110.85729 * 300.70166 * 7 5 4 9 9 C 1.54630 * 110.97134 * 64.49053 * 7 5 4 10 10 C 1.51343 * 104.16485 * 142.89056 * 9 7 5 11 11 O 1.21284 * 124.92597 * 163.79928 * 10 9 7 12 12 N 1.34413 * 110.13127 * 343.80055 * 10 9 7 13 13 C 1.46505 * 124.34769 * 179.58377 * 12 10 9 14 14 C 1.46760 * 111.30395 * 359.55880 * 12 10 9 15 15 C 1.50702 * 109.46986 * 119.99654 * 2 1 3 16 16 O 1.21290 * 119.99879 * 105.65089 * 15 2 1 17 17 N 1.34774 * 119.99979 * 285.65336 * 15 2 1 18 18 C 1.46504 * 119.99690 * 183.80013 * 17 15 2 19 19 C 1.46501 * 120.00231 * 3.79647 * 17 15 2 20 20 C 1.50700 * 109.46914 * 95.30138 * 19 17 15 21 21 H 1.08005 * 120.00034 * 359.97438 * 20 19 17 22 22 C 1.37874 * 120.00032 * 180.02562 * 20 19 17 23 23 N 1.31521 * 119.99657 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00140 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47464 * 269.99620 * 24 22 20 26 26 H 1.48500 * 109.47142 * 29.99789 * 24 22 20 27 27 H 1.48509 * 109.47176 * 149.99918 * 24 22 20 28 28 H 1.09001 * 109.47246 * 181.81181 * 1 2 3 29 29 H 1.08995 * 109.47462 * 301.81454 * 1 2 3 30 30 H 1.09005 * 109.47037 * 61.81626 * 1 2 3 31 31 H 1.08999 * 110.48660 * 261.59631 * 9 7 5 32 32 H 1.09004 * 110.48402 * 24.24202 * 9 7 5 33 33 H 1.08998 * 109.47144 * 269.97225 * 13 12 10 34 34 H 1.08998 * 109.46947 * 29.97490 * 13 12 10 35 35 H 1.09001 * 109.47284 * 149.97325 * 13 12 10 36 36 H 1.09002 * 110.24818 * 258.01996 * 14 12 10 37 37 H 1.08997 * 110.32191 * 136.05408 * 14 12 10 38 38 H 1.09001 * 109.47063 * 273.86360 * 18 17 15 39 39 H 1.09000 * 109.47008 * 33.86431 * 18 17 15 40 40 H 1.08999 * 109.46920 * 153.86653 * 18 17 15 41 41 H 1.08995 * 109.46642 * 335.29920 * 19 17 15 42 42 H 1.09002 * 109.46798 * 215.29731 * 19 17 15 43 43 H 0.97006 * 119.99629 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0141 -0.6846 -1.1855 5 6 2.2172 0.0639 -2.2811 6 8 1.9982 1.2518 -2.2503 7 6 2.7183 -0.5773 -3.5494 8 1 3.6822 -1.0594 -3.3859 9 6 1.6844 -1.5827 -4.1072 10 6 1.7801 -1.4178 -5.6086 11 8 1.3460 -2.2051 -6.4227 12 7 2.4160 -0.2722 -5.9085 13 6 2.6865 0.1905 -7.2720 14 6 2.8041 0.4558 -4.6947 15 6 2.0323 -0.7103 1.2305 16 8 2.5016 -1.8250 1.1382 17 7 1.9600 -0.1071 2.4336 18 6 2.5235 -0.7623 3.6165 19 6 1.3180 1.2038 2.5583 20 6 -0.1196 1.0217 2.9719 21 1 -0.5156 0.0288 3.1260 22 6 -0.9297 2.1226 3.1526 23 7 -0.4476 3.3318 2.9644 24 14 -2.7119 1.8969 3.6646 25 1 -3.5637 1.7790 2.4539 26 1 -2.8397 0.6637 4.4819 27 1 -3.1492 3.0689 4.4651 28 1 -0.3634 -1.0272 0.0325 29 1 -0.3634 0.5417 0.8732 30 1 -0.3633 0.4854 -0.9059 31 1 1.9466 -2.6001 -3.8170 32 1 0.6823 -1.3319 -3.7592 33 1 3.6533 -0.1911 -7.6001 34 1 1.9063 -0.1734 -7.9406 35 1 2.7010 1.2803 -7.2897 36 1 2.1140 1.2796 -4.5121 37 1 3.8229 0.8316 -4.7882 38 1 1.7824 -1.4363 4.0462 39 1 3.4086 -1.3305 3.3302 40 1 2.7988 -0.0077 4.3533 41 1 1.3576 1.7204 1.5993 42 1 1.8407 1.7941 3.3110 43 1 -1.0175 4.1063 3.0919 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000914805520.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:43 Heat of formation + Delta-G solvation = -164.094026 kcal Electronic energy + Delta-G solvation = -26640.595728 eV Core-core repulsion = 22685.759962 eV Total energy + Delta-G solvation = -3954.835766 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.29555 -41.30488 -40.45562 -37.97976 -37.28116 -36.87769 -34.56486 -34.22044 -32.89113 -29.60858 -28.94691 -28.04636 -27.97491 -25.66455 -24.98633 -24.02907 -21.63077 -20.67495 -20.35163 -19.29844 -18.66009 -18.18044 -17.98297 -17.68275 -17.11805 -16.99123 -16.58772 -16.39763 -16.14321 -15.76326 -14.99007 -14.84096 -14.69087 -14.59699 -14.40854 -14.32226 -13.87335 -13.65932 -13.50697 -13.41556 -13.22654 -13.19423 -13.12005 -12.72011 -12.68527 -12.58407 -12.50896 -12.48739 -12.08102 -11.87560 -11.72694 -11.68323 -11.03982 -10.80205 -10.54942 -9.82878 -9.57617 -8.22022 -6.34518 0.97109 1.15911 1.39521 1.43143 1.45347 1.51326 1.56628 1.95603 2.32328 2.44106 3.02277 3.08828 3.21751 3.44862 3.53139 3.69122 3.83235 3.97423 4.03839 4.33140 4.39164 4.47395 4.53072 4.62906 4.66126 4.66468 4.71485 4.77667 4.81357 4.84153 4.86691 4.92093 5.13158 5.28876 5.39276 5.40683 5.61510 5.73935 5.92125 6.00862 6.40091 6.53110 6.75422 6.98165 7.12408 7.35618 8.83566 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.017647 B = 0.003319 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.333186 B = 8433.034485 C = 9118.304234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.085 3.915 3 H 0.103 0.897 4 O -0.334 6.334 5 C 0.472 3.528 6 O -0.520 6.520 7 C -0.084 4.084 8 H 0.161 0.839 9 C -0.140 4.140 10 C 0.515 3.485 11 O -0.572 6.572 12 N -0.619 5.619 13 C 0.090 3.910 14 C 0.117 3.883 15 C 0.516 3.484 16 O -0.574 6.574 17 N -0.597 5.597 18 C 0.094 3.906 19 C 0.242 3.758 20 C -0.541 4.541 21 H 0.059 0.941 22 C 0.027 3.973 23 N -0.914 5.914 24 Si 0.951 3.049 25 H -0.273 1.273 26 H -0.270 1.270 27 H -0.283 1.283 28 H 0.065 0.935 29 H 0.109 0.891 30 H 0.070 0.930 31 H 0.131 0.869 32 H 0.109 0.891 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.098 0.902 36 H 0.085 0.915 37 H 0.122 0.878 38 H 0.051 0.949 39 H 0.070 0.930 40 H 0.085 0.915 41 H 0.033 0.967 42 H 0.029 0.971 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.647 -3.224 -12.964 15.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.027 3.973 3 H 0.120 0.880 4 O -0.250 6.250 5 C 0.315 3.685 6 O -0.408 6.408 7 C -0.104 4.104 8 H 0.178 0.822 9 C -0.180 4.180 10 C 0.304 3.696 11 O -0.452 6.452 12 N -0.353 5.353 13 C -0.051 4.051 14 C -0.005 4.005 15 C 0.303 3.697 16 O -0.455 6.455 17 N -0.328 5.328 18 C -0.048 4.048 19 C 0.121 3.879 20 C -0.579 4.579 21 H 0.077 0.923 22 C -0.174 4.174 23 N -0.553 5.553 24 Si 0.777 3.223 25 H -0.199 1.199 26 H -0.194 1.194 27 H -0.209 1.209 28 H 0.084 0.916 29 H 0.127 0.873 30 H 0.089 0.911 31 H 0.149 0.851 32 H 0.127 0.873 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.116 0.884 36 H 0.104 0.896 37 H 0.140 0.860 38 H 0.070 0.930 39 H 0.089 0.911 40 H 0.104 0.896 41 H 0.051 0.949 42 H 0.047 0.953 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.580 -3.588 -13.439 15.841 hybrid contribution -1.138 0.412 0.612 1.356 sum 6.443 -3.176 -12.827 14.701 Atomic orbital electron populations 1.22403 0.90856 1.03817 1.05959 1.22380 0.97014 0.96418 0.81458 0.87984 1.86563 1.76495 1.42061 1.19864 1.23742 0.73742 0.85534 0.85510 1.90703 1.48415 1.17399 1.84315 1.21951 1.02976 0.97503 0.87924 0.82174 1.22338 1.01193 1.02775 0.91665 1.21015 0.76495 0.80842 0.91267 1.90714 1.51061 1.47449 1.55943 1.48327 1.57107 1.21675 1.08155 1.21778 1.02008 1.01663 0.79654 1.22142 1.04544 0.93289 0.80556 1.20151 0.78676 0.85832 0.85015 1.90611 1.48100 1.19937 1.86850 1.48087 1.55978 1.21670 1.07067 1.21625 0.98229 0.98172 0.86800 1.19364 0.92181 0.78528 0.97811 1.21527 0.95928 0.93043 1.47412 0.92292 1.25589 1.02292 0.94697 0.94850 1.70003 1.37917 0.98512 1.48831 0.85651 0.80306 0.77794 0.78589 1.19893 1.19408 1.20889 0.91569 0.87262 0.91103 0.85112 0.87301 0.90864 0.91673 0.88375 0.89636 0.85983 0.92996 0.91135 0.89630 0.94937 0.95298 0.92200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.38 9.32 71.98 0.67 -5.71 16 2 C 0.09 3.17 2.14 29.85 0.06 3.23 16 3 H 0.10 3.95 5.78 -2.39 -0.01 3.94 16 4 O -0.33 -10.86 9.46 -45.22 -0.43 -11.29 16 5 C 0.47 12.61 7.15 71.23 0.51 13.12 16 6 O -0.52 -16.44 14.75 21.98 0.32 -16.12 16 7 C -0.08 -1.46 3.65 -10.48 -0.04 -1.50 16 8 H 0.16 1.92 8.14 -2.39 -0.02 1.90 16 9 C -0.14 -2.65 6.41 30.61 0.20 -2.45 16 10 C 0.52 11.76 8.02 87.92 0.71 12.47 16 11 O -0.57 -17.70 17.59 -3.04 -0.05 -17.75 16 12 N -0.62 -10.68 3.33 -842.82 -2.81 -13.49 16 13 C 0.09 1.11 10.96 127.77 1.40 2.51 16 14 C 0.12 1.73 6.69 86.83 0.58 2.31 16 15 C 0.52 21.11 7.00 87.66 0.61 21.73 16 16 O -0.57 -25.37 16.25 15.31 0.25 -25.12 16 17 N -0.60 -24.12 2.86 -851.11 -2.43 -26.55 16 18 C 0.09 3.19 10.40 127.77 1.33 4.52 16 19 C 0.24 10.85 4.71 85.63 0.40 11.26 16 20 C -0.54 -26.10 6.83 25.60 0.17 -25.93 16 21 H 0.06 2.89 7.81 -2.91 -0.02 2.86 16 22 C 0.03 1.35 5.46 84.65 0.46 1.81 16 23 N -0.91 -47.89 13.29 21.45 0.28 -47.61 16 24 Si 0.95 39.72 29.54 68.60 2.03 41.75 16 25 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 26 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 27 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 28 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.11 4.62 4.35 -2.39 -0.01 4.61 16 30 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 31 H 0.13 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.11 2.17 7.89 -2.39 -0.02 2.15 16 33 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.06 0.99 7.92 -2.39 -0.02 0.97 16 35 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.09 1.51 7.01 -2.39 -0.02 1.49 16 37 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.07 2.25 7.60 -2.39 -0.02 2.23 16 40 H 0.09 2.61 7.90 -2.39 -0.02 2.59 16 41 H 0.03 1.53 5.64 -2.39 -0.01 1.52 16 42 H 0.03 1.36 7.95 -2.39 -0.02 1.34 16 43 H 0.27 13.44 8.31 -92.70 -0.77 12.67 16 Total: -1.00 -66.55 360.43 5.26 -61.29 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: 1.02 Total: 17.50 kcal Atomic # 6 Polarization: 30.31 SS G_CDS: 7.07 Total: 37.38 kcal Atomic # 7 Polarization: -82.69 SS G_CDS: -4.96 Total: -87.65 kcal Atomic # 8 Polarization: -70.36 SS G_CDS: 0.09 Total: -70.27 kcal Atomic # 14 Polarization: 39.72 SS G_CDS: 2.03 Total: 41.75 kcal Total: -66.55 5.26 -61.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914805520.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.801 kcal (2) G-P(sol) polarization free energy of solvation -66.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds