Wall clock time and date at job start Fri Apr 10 2020 18:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47137 * 2 1 4 4 O 1.45199 * 109.47440 * 119.99983 * 2 1 3 5 5 C 1.34231 * 116.99719 * 270.00215 * 4 2 1 6 6 O 1.20822 * 120.00298 * 359.97438 * 5 4 2 7 7 C 1.50706 * 119.99869 * 179.97438 * 5 4 2 8 8 N 1.46499 * 109.47149 * 180.02562 * 7 5 4 9 9 C 1.34778 * 120.00156 * 180.02562 * 8 7 5 10 10 O 1.21276 * 119.99690 * 359.97438 * 9 8 7 11 11 C 1.50698 * 119.99910 * 179.97438 * 9 8 7 12 12 C 1.52998 * 117.49788 * 248.74388 * 11 9 8 13 13 C 1.53004 * 117.49715 * 180.08346 * 11 9 8 14 14 C 1.50703 * 109.47391 * 239.99814 * 2 1 3 15 15 O 1.21281 * 120.00092 * 248.56941 * 14 2 1 16 16 N 1.34775 * 119.99548 * 68.56547 * 14 2 1 17 17 C 1.46499 * 120.00398 * 4.58815 * 16 14 2 18 18 C 1.46503 * 119.99649 * 184.58442 * 16 14 2 19 19 C 1.50700 * 109.47318 * 90.00301 * 18 16 14 20 20 H 1.08006 * 119.99559 * 359.97438 * 19 18 16 21 21 C 1.37879 * 120.00355 * 180.02562 * 19 18 16 22 22 N 1.31510 * 119.99842 * 180.02562 * 21 19 18 23 23 Si 1.86794 * 119.99754 * 359.97438 * 21 19 18 24 24 H 1.48494 * 109.47457 * 89.99899 * 23 21 19 25 25 H 1.48499 * 109.47103 * 210.00017 * 23 21 19 26 26 H 1.48507 * 109.47335 * 329.99721 * 23 21 19 27 27 H 1.08998 * 109.47274 * 187.14929 * 1 2 3 28 28 H 1.08992 * 109.46984 * 307.15510 * 1 2 3 29 29 H 1.09000 * 109.46924 * 67.15322 * 1 2 3 30 30 H 1.09003 * 109.47070 * 300.00068 * 7 5 4 31 31 H 1.09002 * 109.46796 * 60.00212 * 7 5 4 32 32 H 0.97009 * 119.99620 * 359.97438 * 8 7 5 33 33 H 1.09000 * 115.55317 * 34.41375 * 11 9 8 34 34 H 1.08999 * 117.49852 * 359.97438 * 12 11 9 35 35 H 1.08995 * 117.49947 * 145.02427 * 12 11 9 36 36 H 1.08993 * 117.49875 * 214.98426 * 13 11 9 37 37 H 1.09004 * 117.49873 * 359.97438 * 13 11 9 38 38 H 1.08999 * 109.47212 * 86.11747 * 17 16 14 39 39 H 1.08995 * 109.46916 * 206.11259 * 17 16 14 40 40 H 1.08994 * 109.46926 * 326.12017 * 17 16 14 41 41 H 1.09006 * 109.47067 * 210.00238 * 18 16 14 42 42 H 1.09001 * 109.47476 * 330.00181 * 18 16 14 43 43 H 0.96997 * 119.99775 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 2.2171 0.0641 2.2811 6 8 1.9982 1.2519 2.2503 7 6 2.7183 -0.5771 3.5495 8 7 2.8563 0.4437 4.5912 9 6 3.2931 0.0991 5.8188 10 8 3.5715 -1.0562 6.0611 11 6 3.4355 1.1493 6.8902 12 6 4.8520 1.5091 7.3427 13 6 3.9380 0.6952 8.2621 14 6 2.0324 -0.7104 -1.2304 15 8 2.5963 -1.7790 -1.1259 16 7 1.8548 -0.1583 -2.4470 17 6 1.2645 1.1772 -2.5663 18 6 2.2524 -0.8936 -3.6502 19 6 1.0934 -1.7249 -4.1367 20 1 0.1548 -1.7076 -3.6028 21 6 1.2317 -2.5084 -5.2628 22 7 0.2201 -3.2335 -5.6876 23 14 2.8554 -2.5388 -6.1858 24 1 3.7182 -3.6144 -5.6345 25 1 2.6015 -2.7972 -7.6259 26 1 3.5376 -1.2288 -6.0308 27 1 -0.3634 -1.0196 0.1279 28 1 -0.3633 0.6206 0.8190 29 1 -0.3633 0.3990 -0.9471 30 1 2.0088 -1.3369 3.8775 31 1 3.6873 -1.0407 3.3639 32 1 2.6339 1.3678 4.3972 33 1 2.6966 1.9502 6.8646 34 1 5.6809 0.9860 6.8659 35 1 5.0449 2.5466 7.6154 36 1 3.5299 1.1975 9.1391 37 1 4.1651 -0.3633 8.3899 38 1 2.0471 1.9301 -2.4733 39 1 0.7801 1.2748 -3.5378 40 1 0.5271 1.3203 -1.7765 41 1 2.5447 -0.1875 -4.4275 42 1 3.0941 -1.5453 -3.4162 43 1 0.3175 -3.7850 -6.4796 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000915015638.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:57 Heat of formation + Delta-G solvation = -114.845026 kcal Electronic energy + Delta-G solvation = -25550.788971 eV Core-core repulsion = 21598.088802 eV Total energy + Delta-G solvation = -3952.700169 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.10424 -40.19887 -39.14730 -36.96625 -36.48439 -35.10706 -34.84824 -32.88225 -31.84805 -29.14936 -28.34571 -26.34272 -24.90915 -24.07456 -22.86731 -22.39190 -21.00908 -20.65174 -19.00441 -18.46230 -17.50743 -17.09854 -16.97104 -16.74743 -16.16796 -15.91089 -15.59761 -15.26087 -14.93365 -14.69552 -14.40504 -14.03021 -13.93323 -13.24204 -13.12595 -12.97780 -12.79558 -12.51190 -12.39294 -12.31148 -11.99413 -11.89600 -11.59195 -11.43500 -11.08663 -11.00899 -10.98419 -10.90125 -10.81673 -10.56478 -10.32541 -10.20411 -9.62034 -9.60746 -9.11204 -8.64273 -7.85536 -6.14214 -4.14025 1.82508 1.96031 2.08405 2.85076 3.07178 3.26035 3.31884 3.34217 3.41312 3.66260 4.19544 4.32178 4.34941 4.41477 4.43780 4.65596 4.68526 4.87094 4.90038 4.97403 5.03473 5.16425 5.19024 5.32312 5.33663 5.49668 5.55944 5.61806 5.68799 5.71973 5.83394 5.96751 6.16246 6.21256 6.58635 6.85073 7.02660 7.16642 7.38409 7.53056 7.78170 8.03330 8.38857 8.73663 8.88317 9.45207 10.98834 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.030902 B = 0.002313 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.863254 B =12101.902729 C =12354.937964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.073 3.927 3 H 0.106 0.894 4 O -0.318 6.318 5 C 0.461 3.539 6 O -0.510 6.510 7 C 0.127 3.873 8 N -0.719 5.719 9 C 0.548 3.452 10 O -0.536 6.536 11 C -0.195 4.195 12 C -0.152 4.152 13 C -0.146 4.146 14 C 0.511 3.489 15 O -0.518 6.518 16 N -0.591 5.591 17 C 0.066 3.934 18 C 0.216 3.784 19 C -0.533 4.533 20 H 0.076 0.924 21 C 0.073 3.927 22 N -0.895 5.895 23 Si 0.877 3.123 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.266 1.266 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.095 0.905 30 H 0.116 0.884 31 H 0.116 0.884 32 H 0.413 0.587 33 H 0.127 0.873 34 H 0.101 0.899 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.109 0.891 38 H 0.049 0.951 39 H 0.083 0.917 40 H 0.068 0.932 41 H 0.034 0.966 42 H 0.039 0.961 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.359 14.233 22.296 26.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.015 3.985 3 H 0.124 0.876 4 O -0.232 6.232 5 C 0.303 3.697 6 O -0.399 6.399 7 C 0.002 3.998 8 N -0.376 5.376 9 C 0.334 3.666 10 O -0.412 6.412 11 C -0.216 4.216 12 C -0.189 4.189 13 C -0.184 4.184 14 C 0.296 3.704 15 O -0.393 6.393 16 N -0.324 5.324 17 C -0.077 4.077 18 C 0.096 3.904 19 C -0.572 4.572 20 H 0.094 0.906 21 C -0.130 4.130 22 N -0.533 5.533 23 Si 0.703 3.297 24 H -0.198 1.198 25 H -0.210 1.210 26 H -0.191 1.191 27 H 0.097 0.903 28 H 0.089 0.911 29 H 0.113 0.887 30 H 0.134 0.866 31 H 0.134 0.866 32 H 0.251 0.749 33 H 0.145 0.855 34 H 0.119 0.881 35 H 0.124 0.876 36 H 0.123 0.877 37 H 0.128 0.872 38 H 0.067 0.933 39 H 0.101 0.899 40 H 0.086 0.914 41 H 0.052 0.948 42 H 0.057 0.943 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.724 13.027 22.269 26.228 hybrid contribution 0.364 0.558 -0.941 1.153 sum 5.088 13.585 21.328 25.794 Atomic orbital electron populations 1.22317 0.91752 1.04553 1.04268 1.22680 0.96250 0.97293 0.82284 0.87610 1.86616 1.76048 1.41088 1.19418 1.23487 0.74314 0.85880 0.85971 1.90637 1.48639 1.16464 1.84150 1.20634 1.04806 0.91293 0.83053 1.45689 1.68733 1.12563 1.10580 1.19662 0.76029 0.88958 0.81910 1.90737 1.49509 1.19998 1.80961 1.22144 1.01219 1.01691 0.96537 1.22987 0.91523 1.01765 1.02669 1.22997 1.01737 1.02061 0.91585 1.19747 0.80804 0.86078 0.83804 1.90712 1.41587 1.21293 1.85743 1.47726 1.61069 1.17373 1.06239 1.22013 0.97954 0.83657 1.04071 1.19750 0.97277 0.92245 0.81120 1.21301 0.98767 1.25765 1.11321 0.90634 1.24853 0.96542 0.94671 0.96897 1.69887 1.30845 1.28006 1.24542 0.86845 0.84333 0.79255 0.79227 1.19818 1.21003 1.19058 0.90325 0.91142 0.88705 0.86578 0.86576 0.74887 0.85536 0.88081 0.87576 0.87742 0.87246 0.93268 0.89854 0.91354 0.94815 0.94275 0.92462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.29 9.14 37.16 0.34 -1.95 16 2 C 0.07 1.13 2.16 -27.88 -0.06 1.07 16 3 H 0.11 1.44 6.73 -51.93 -0.35 1.09 16 4 O -0.32 -4.86 9.43 -45.86 -0.43 -5.30 16 5 C 0.46 5.68 8.00 36.01 0.29 5.97 16 6 O -0.51 -6.61 14.89 -18.75 -0.28 -6.89 16 7 C 0.13 1.27 6.27 -5.19 -0.03 1.24 16 8 N -0.72 -6.49 5.53 -61.47 -0.34 -6.83 16 9 C 0.55 5.42 7.61 -10.99 -0.08 5.34 16 10 O -0.54 -7.21 16.26 5.56 0.09 -7.12 16 11 C -0.19 -1.32 6.19 -91.77 -0.57 -1.88 16 12 C -0.15 -0.86 10.24 -26.69 -0.27 -1.14 16 13 C -0.15 -0.91 10.05 -26.69 -0.27 -1.18 16 14 C 0.51 10.40 7.03 -10.98 -0.08 10.32 16 15 O -0.52 -12.83 16.08 -13.95 -0.22 -13.06 16 16 N -0.59 -11.81 2.86 -182.95 -0.52 -12.34 16 17 C 0.07 0.96 9.80 59.85 0.59 1.55 16 18 C 0.22 5.16 4.25 -5.19 -0.02 5.14 16 19 C -0.53 -14.94 9.94 -34.44 -0.34 -15.28 16 20 H 0.08 2.30 8.06 -52.48 -0.42 1.88 16 21 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 22 N -0.89 -27.13 13.96 55.43 0.77 -26.35 16 23 Si 0.88 21.24 27.47 -169.99 -4.67 16.57 16 24 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.27 -6.04 6.54 56.52 0.37 -5.67 16 27 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.09 1.21 5.46 -51.93 -0.28 0.93 16 30 H 0.12 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.12 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.41 3.24 7.44 -40.82 -0.30 2.94 16 33 H 0.13 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.11 0.85 7.67 -51.93 -0.40 0.45 16 38 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.08 1.23 8.04 -51.93 -0.42 0.81 16 40 H 0.07 0.82 4.31 -51.93 -0.22 0.60 16 41 H 0.03 0.76 7.13 -51.93 -0.37 0.39 16 42 H 0.04 1.00 6.79 -51.93 -0.35 0.65 16 43 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 366.57 15.07 5.52 5.52 Total: -1.00 -36.16 366.57 -6.78 -42.94 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -6.09 Total: 1.64 kcal Atomic # 6 Polarization: 11.82 SS G_CDS: -0.61 Total: 11.21 kcal Atomic # 7 Polarization: -45.43 SS G_CDS: -0.09 Total: -45.52 kcal Atomic # 8 Polarization: -31.52 SS G_CDS: -0.85 Total: -32.36 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.67 Total: 16.57 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -36.16 -6.78 -42.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915015638.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.900 kcal (2) G-P(sol) polarization free energy of solvation -36.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds