Wall clock time and date at job start Fri Apr 10 2020 18:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47137 * 2 1 4 4 O 1.45199 * 109.47440 * 119.99983 * 2 1 3 5 5 C 1.34231 * 116.99719 * 270.00215 * 4 2 1 6 6 O 1.20822 * 120.00298 * 359.97438 * 5 4 2 7 7 C 1.50706 * 119.99869 * 179.97438 * 5 4 2 8 8 N 1.46499 * 109.47149 * 180.02562 * 7 5 4 9 9 C 1.34778 * 120.00156 * 180.02562 * 8 7 5 10 10 O 1.21276 * 119.99690 * 359.97438 * 9 8 7 11 11 C 1.50698 * 119.99910 * 179.97438 * 9 8 7 12 12 C 1.52998 * 117.49788 * 248.74388 * 11 9 8 13 13 C 1.53004 * 117.49715 * 180.08346 * 11 9 8 14 14 C 1.50703 * 109.47391 * 239.99814 * 2 1 3 15 15 O 1.21281 * 120.00092 * 248.56941 * 14 2 1 16 16 N 1.34775 * 119.99548 * 68.56547 * 14 2 1 17 17 C 1.46499 * 120.00398 * 4.58815 * 16 14 2 18 18 C 1.46503 * 119.99649 * 184.58442 * 16 14 2 19 19 C 1.50700 * 109.47318 * 90.00301 * 18 16 14 20 20 H 1.08006 * 119.99559 * 359.97438 * 19 18 16 21 21 C 1.37879 * 120.00355 * 180.02562 * 19 18 16 22 22 N 1.31510 * 119.99842 * 180.02562 * 21 19 18 23 23 Si 1.86794 * 119.99754 * 359.97438 * 21 19 18 24 24 H 1.48494 * 109.47457 * 89.99899 * 23 21 19 25 25 H 1.48499 * 109.47103 * 210.00017 * 23 21 19 26 26 H 1.48507 * 109.47335 * 329.99721 * 23 21 19 27 27 H 1.08998 * 109.47274 * 187.14929 * 1 2 3 28 28 H 1.08992 * 109.46984 * 307.15510 * 1 2 3 29 29 H 1.09000 * 109.46924 * 67.15322 * 1 2 3 30 30 H 1.09003 * 109.47070 * 300.00068 * 7 5 4 31 31 H 1.09002 * 109.46796 * 60.00212 * 7 5 4 32 32 H 0.97009 * 119.99620 * 359.97438 * 8 7 5 33 33 H 1.09000 * 115.55317 * 34.41375 * 11 9 8 34 34 H 1.08999 * 117.49852 * 359.97438 * 12 11 9 35 35 H 1.08995 * 117.49947 * 145.02427 * 12 11 9 36 36 H 1.08993 * 117.49875 * 214.98426 * 13 11 9 37 37 H 1.09004 * 117.49873 * 359.97438 * 13 11 9 38 38 H 1.08999 * 109.47212 * 86.11747 * 17 16 14 39 39 H 1.08995 * 109.46916 * 206.11259 * 17 16 14 40 40 H 1.08994 * 109.46926 * 326.12017 * 17 16 14 41 41 H 1.09006 * 109.47067 * 210.00238 * 18 16 14 42 42 H 1.09001 * 109.47476 * 330.00181 * 18 16 14 43 43 H 0.96997 * 119.99775 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 2.2171 0.0641 2.2811 6 8 1.9982 1.2519 2.2503 7 6 2.7183 -0.5771 3.5495 8 7 2.8563 0.4437 4.5912 9 6 3.2931 0.0991 5.8188 10 8 3.5715 -1.0562 6.0611 11 6 3.4355 1.1493 6.8902 12 6 4.8520 1.5091 7.3427 13 6 3.9380 0.6952 8.2621 14 6 2.0324 -0.7104 -1.2304 15 8 2.5963 -1.7790 -1.1259 16 7 1.8548 -0.1583 -2.4470 17 6 1.2645 1.1772 -2.5663 18 6 2.2524 -0.8936 -3.6502 19 6 1.0934 -1.7249 -4.1367 20 1 0.1548 -1.7076 -3.6028 21 6 1.2317 -2.5084 -5.2628 22 7 0.2201 -3.2335 -5.6876 23 14 2.8554 -2.5388 -6.1858 24 1 3.7182 -3.6144 -5.6345 25 1 2.6015 -2.7972 -7.6259 26 1 3.5376 -1.2288 -6.0308 27 1 -0.3634 -1.0196 0.1279 28 1 -0.3633 0.6206 0.8190 29 1 -0.3633 0.3990 -0.9471 30 1 2.0088 -1.3369 3.8775 31 1 3.6873 -1.0407 3.3639 32 1 2.6339 1.3678 4.3972 33 1 2.6966 1.9502 6.8646 34 1 5.6809 0.9860 6.8659 35 1 5.0449 2.5466 7.6154 36 1 3.5299 1.1975 9.1391 37 1 4.1651 -0.3633 8.3899 38 1 2.0471 1.9301 -2.4733 39 1 0.7801 1.2748 -3.5378 40 1 0.5271 1.3203 -1.7765 41 1 2.5447 -0.1875 -4.4275 42 1 3.0941 -1.5453 -3.4162 43 1 0.3175 -3.7850 -6.4796 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000915015638.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:55 Heat of formation + Delta-G solvation = -140.435403 kcal Electronic energy + Delta-G solvation = -25551.898653 eV Core-core repulsion = 21598.088802 eV Total energy + Delta-G solvation = -3953.809851 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.18027 -41.09862 -40.53485 -38.00744 -37.14592 -36.77476 -35.70650 -34.85297 -33.28305 -30.37231 -29.81099 -27.70820 -26.03009 -25.18087 -23.95530 -23.29651 -22.11314 -21.41118 -20.48597 -19.33708 -19.14398 -18.51876 -18.17646 -17.74886 -17.31347 -17.16777 -16.63288 -16.40699 -16.26004 -15.94616 -15.54655 -15.09383 -14.95062 -14.79175 -14.38256 -14.15227 -13.91963 -13.76362 -13.64714 -13.56802 -13.43328 -13.19498 -12.91322 -12.52914 -12.43057 -12.39199 -12.03803 -12.02599 -11.89633 -11.74748 -11.55939 -11.47043 -11.10810 -10.84093 -10.71840 -10.41480 -9.51532 -8.34666 -6.40166 0.82272 0.94964 1.33223 1.35921 1.37440 1.45071 1.51633 1.99798 2.30361 2.33576 2.91021 2.99578 3.27078 3.33927 3.65741 3.71803 3.77296 3.85646 3.98038 4.09960 4.19417 4.20480 4.28528 4.48499 4.54992 4.61589 4.75065 4.76531 4.83927 4.90567 4.92265 4.98753 5.08144 5.11655 5.17043 5.24544 5.42357 5.50334 6.19799 6.29648 6.35547 6.51290 6.61498 7.04374 7.12245 7.26793 8.81707 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.030902 B = 0.002313 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.863254 B =12101.902729 C =12354.937964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.083 3.917 3 H 0.132 0.868 4 O -0.339 6.339 5 C 0.468 3.532 6 O -0.512 6.512 7 C 0.130 3.870 8 N -0.710 5.710 9 C 0.543 3.457 10 O -0.579 6.579 11 C -0.200 4.200 12 C -0.143 4.143 13 C -0.151 4.151 14 C 0.500 3.500 15 O -0.576 6.576 16 N -0.596 5.596 17 C 0.058 3.942 18 C 0.222 3.778 19 C -0.538 4.538 20 H 0.034 0.966 21 C 0.012 3.988 22 N -0.942 5.942 23 Si 0.946 3.054 24 H -0.278 1.278 25 H -0.275 1.275 26 H -0.236 1.236 27 H 0.060 0.940 28 H 0.099 0.901 29 H 0.100 0.900 30 H 0.123 0.877 31 H 0.117 0.883 32 H 0.421 0.579 33 H 0.154 0.846 34 H 0.088 0.912 35 H 0.132 0.868 36 H 0.128 0.872 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.094 0.906 41 H 0.058 0.942 42 H 0.020 0.980 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.203 17.369 23.231 29.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.025 3.975 3 H 0.150 0.850 4 O -0.254 6.254 5 C 0.311 3.689 6 O -0.400 6.400 7 C 0.005 3.995 8 N -0.367 5.367 9 C 0.332 3.668 10 O -0.458 6.458 11 C -0.220 4.220 12 C -0.181 4.181 13 C -0.188 4.188 14 C 0.287 3.713 15 O -0.455 6.455 16 N -0.328 5.328 17 C -0.083 4.083 18 C 0.100 3.900 19 C -0.576 4.576 20 H 0.053 0.947 21 C -0.187 4.187 22 N -0.582 5.582 23 Si 0.768 3.232 24 H -0.204 1.204 25 H -0.201 1.201 26 H -0.159 1.159 27 H 0.079 0.921 28 H 0.118 0.882 29 H 0.119 0.881 30 H 0.141 0.859 31 H 0.135 0.865 32 H 0.261 0.739 33 H 0.172 0.828 34 H 0.106 0.894 35 H 0.151 0.849 36 H 0.146 0.854 37 H 0.105 0.895 38 H 0.102 0.898 39 H 0.098 0.902 40 H 0.112 0.888 41 H 0.076 0.924 42 H 0.038 0.962 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.541 16.258 23.211 28.876 hybrid contribution 0.032 -0.412 -1.163 1.234 sum 5.573 15.846 22.049 27.718 Atomic orbital electron populations 1.22316 0.90096 1.04174 1.05746 1.22570 0.97191 0.97312 0.80406 0.85016 1.86621 1.76573 1.42164 1.20027 1.23726 0.73839 0.85721 0.85613 1.90626 1.48816 1.16478 1.84127 1.20634 1.04913 0.91629 0.82340 1.45658 1.68232 1.12672 1.10115 1.20280 0.74973 0.89091 0.82430 1.90720 1.51446 1.21972 1.81670 1.22251 1.02773 1.01486 0.95517 1.23087 0.90413 1.02918 1.01639 1.23061 1.02187 1.01253 0.92299 1.20663 0.79728 0.85628 0.85275 1.90672 1.44152 1.23922 1.86780 1.47808 1.60893 1.18950 1.05175 1.22361 0.99587 0.81380 1.04991 1.19448 0.94849 0.92421 0.83250 1.21530 0.98597 1.26529 1.10954 0.94743 1.25825 1.00563 0.94182 0.98090 1.70036 1.33425 1.29268 1.25472 0.85748 0.79256 0.80395 0.77760 1.20417 1.20055 1.15927 0.92122 0.88204 0.88146 0.85911 0.86502 0.73936 0.82828 0.89373 0.84943 0.85356 0.89490 0.89845 0.90200 0.88761 0.92430 0.96184 0.92246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.14 9.14 71.98 0.66 -3.48 16 2 C 0.08 2.45 2.16 29.85 0.06 2.51 16 3 H 0.13 3.18 6.73 -2.39 -0.02 3.16 16 4 O -0.34 -10.12 9.43 -45.12 -0.43 -10.55 16 5 C 0.47 10.80 8.00 71.24 0.57 11.37 16 6 O -0.51 -11.89 14.89 21.98 0.33 -11.57 16 7 C 0.13 2.49 6.27 85.64 0.54 3.03 16 8 N -0.71 -11.78 5.53 -466.78 -2.58 -14.36 16 9 C 0.54 10.27 7.61 87.66 0.67 10.94 16 10 O -0.58 -15.72 16.26 -3.02 -0.05 -15.77 16 11 C -0.20 -2.29 6.19 -11.54 -0.07 -2.36 16 12 C -0.14 -1.33 10.24 30.62 0.31 -1.02 16 13 C -0.15 -1.64 10.05 30.62 0.31 -1.33 16 14 C 0.50 20.31 7.03 87.66 0.62 20.93 16 15 O -0.58 -29.39 16.08 15.62 0.25 -29.14 16 16 N -0.60 -23.35 2.86 -851.13 -2.43 -25.78 16 17 C 0.06 1.53 9.80 127.77 1.25 2.78 16 18 C 0.22 10.54 4.25 85.63 0.36 10.90 16 19 C -0.54 -30.83 9.94 25.60 0.25 -30.58 16 20 H 0.03 2.19 8.06 -2.91 -0.02 2.17 16 21 C 0.01 0.69 5.47 84.66 0.46 1.15 16 22 N -0.94 -58.69 13.96 21.45 0.30 -58.40 16 23 Si 0.95 43.75 27.47 68.60 1.88 45.64 16 24 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 25 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 26 H -0.24 -9.71 6.54 99.48 0.65 -9.06 16 27 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.10 2.36 5.46 -2.39 -0.01 2.35 16 30 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.42 5.65 7.44 -92.70 -0.69 4.96 16 33 H 0.15 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.13 0.54 8.14 -2.39 -0.02 0.53 16 36 H 0.13 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.09 1.36 7.67 -2.38 -0.02 1.34 16 38 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.08 2.18 8.04 -2.39 -0.02 2.16 16 40 H 0.09 1.98 4.31 -2.39 -0.01 1.97 16 41 H 0.06 2.46 7.13 -2.38 -0.02 2.44 16 42 H 0.02 1.03 6.79 -2.39 -0.02 1.02 16 43 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -82.34 366.57 3.57 -78.77 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: 0.30 Total: 16.32 kcal Atomic # 6 Polarization: 18.84 SS G_CDS: 6.00 Total: 24.84 kcal Atomic # 7 Polarization: -93.83 SS G_CDS: -4.71 Total: -98.54 kcal Atomic # 8 Polarization: -67.13 SS G_CDS: 0.10 Total: -67.02 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 1.88 Total: 45.64 kcal Total: -82.34 3.57 -78.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915015638.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.667 kcal (2) G-P(sol) polarization free energy of solvation -82.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds