Wall clock time and date at job start Fri Apr 10 2020 18:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08992 * 109.47262 * 2 1 4 4 O 1.45203 * 109.47088 * 239.99943 * 2 1 3 5 5 C 1.34226 * 116.99798 * 90.00039 * 4 2 1 6 6 O 1.20824 * 119.99959 * 0.02562 * 5 4 2 7 7 C 1.50703 * 119.99900 * 179.97438 * 5 4 2 8 8 N 1.46505 * 109.47064 * 180.02562 * 7 5 4 9 9 C 1.34771 * 119.99622 * 179.97438 * 8 7 5 10 10 O 1.21280 * 120.00597 * 0.02562 * 9 8 7 11 11 C 1.50701 * 119.99622 * 179.97438 * 9 8 7 12 12 C 1.53000 * 117.50158 * 248.75065 * 11 9 8 13 13 C 1.52998 * 117.49874 * 180.08793 * 11 9 8 14 14 C 1.50702 * 109.47065 * 120.00387 * 2 1 3 15 15 O 1.21283 * 120.00151 * 119.99368 * 14 2 1 16 16 N 1.34775 * 119.99860 * 299.99703 * 14 2 1 17 17 C 1.46500 * 119.99890 * 0.02562 * 16 14 2 18 18 C 1.46501 * 120.00389 * 179.97438 * 16 14 2 19 19 C 1.50702 * 109.46389 * 89.99900 * 18 16 14 20 20 H 1.07998 * 120.00298 * 0.02562 * 19 18 16 21 21 C 1.37881 * 120.00003 * 179.97438 * 19 18 16 22 22 N 1.31517 * 119.99718 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00386 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46505 * 60.00514 * 23 21 19 25 25 H 1.48493 * 109.47098 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47148 * 300.00704 * 23 21 19 27 27 H 1.08999 * 109.46931 * 59.99719 * 1 2 3 28 28 H 1.09001 * 109.47469 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46989 * 300.00107 * 1 2 3 30 30 H 1.09002 * 109.47152 * 60.00249 * 7 5 4 31 31 H 1.09001 * 109.46980 * 300.00350 * 7 5 4 32 32 H 0.96996 * 119.99606 * 0.02562 * 8 7 5 33 33 H 1.08997 * 115.55243 * 34.42440 * 11 9 8 34 34 H 1.08997 * 117.49657 * 359.97438 * 12 11 9 35 35 H 1.08997 * 117.49954 * 145.02360 * 12 11 9 36 36 H 1.09002 * 117.50193 * 214.98041 * 13 11 9 37 37 H 1.09001 * 117.49982 * 359.97438 * 13 11 9 38 38 H 1.09003 * 109.47576 * 90.00340 * 17 16 14 39 39 H 1.09002 * 109.47255 * 209.99673 * 17 16 14 40 40 H 1.09000 * 109.47462 * 329.99640 * 17 16 14 41 41 H 1.08995 * 109.47779 * 210.00191 * 18 16 14 42 42 H 1.08997 * 109.47015 * 330.00881 * 18 16 14 43 43 H 0.96998 * 119.99661 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6845 -1.1856 5 6 2.2171 0.0640 -2.2811 6 8 1.9982 1.2518 -2.2503 7 6 2.7193 -0.5770 -3.5492 8 7 2.8583 0.4439 -4.5906 9 6 3.2961 0.0994 -5.8178 10 8 3.5746 -1.0558 -6.0602 11 6 3.4384 1.1496 -6.8893 12 6 2.4707 1.0871 -8.0727 13 6 3.9382 0.6950 -8.2620 14 6 2.0324 -0.7105 1.2304 15 8 2.7295 -1.6967 1.1191 16 7 1.7068 -0.2501 2.4545 17 6 0.8641 0.9408 2.5890 18 6 2.1946 -0.9410 3.6507 19 6 3.5223 -0.3580 4.0610 20 1 3.9588 0.4469 3.4884 21 6 4.1793 -0.8515 5.1682 22 7 3.6475 -1.8313 5.8659 23 14 5.8248 -0.1285 5.6773 24 1 5.6598 1.3174 5.9730 25 1 6.3194 -0.8288 6.8897 26 1 6.8034 -0.2995 4.5736 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 2.0105 -1.3373 -3.8774 31 1 3.6884 -1.0400 -3.3631 32 1 2.6359 1.3679 -4.3966 33 1 3.7468 2.1359 -6.5428 34 1 1.7314 0.2863 -8.0765 35 1 2.1427 2.0324 -8.5050 36 1 4.5750 1.3824 -8.8188 37 1 4.1645 -0.3636 -8.3900 38 1 -0.1838 0.6425 2.6225 39 1 1.1218 1.4663 3.5085 40 1 1.0273 1.5996 1.7360 41 1 1.4766 -0.8155 4.4611 42 1 2.3154 -2.0022 3.4335 43 1 4.1099 -2.1787 6.6446 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000915015639.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:00 Heat of formation + Delta-G solvation = -119.551408 kcal Electronic energy + Delta-G solvation = -25547.440381 eV Core-core repulsion = 21594.536128 eV Total energy + Delta-G solvation = -3952.904253 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.05910 -40.16388 -39.05556 -36.91473 -36.44749 -35.02523 -34.81344 -32.98118 -31.71929 -29.08688 -27.69990 -26.31333 -24.85572 -24.10736 -22.85611 -22.60882 -21.02478 -20.62711 -19.01247 -18.43871 -17.46233 -17.00759 -16.70339 -16.55424 -16.13490 -15.85460 -15.47421 -15.27837 -14.86815 -14.60367 -14.51321 -13.99378 -13.76073 -13.21312 -13.17233 -12.91946 -12.81022 -12.48106 -12.25919 -12.15191 -11.97604 -11.73364 -11.46884 -11.20349 -11.06410 -10.98210 -10.96765 -10.84821 -10.81576 -10.60664 -10.29758 -10.20760 -9.71366 -9.58732 -8.99144 -8.47924 -7.79245 -6.09264 -4.14543 1.86819 2.01152 2.11116 2.89240 3.18398 3.29528 3.34210 3.37864 3.43313 3.75749 4.22359 4.34541 4.40146 4.44058 4.46250 4.71240 4.74715 4.87491 4.93834 5.00091 5.07919 5.17530 5.25302 5.34873 5.40408 5.51397 5.55495 5.56220 5.70572 5.76551 5.85654 5.91584 6.15487 6.22260 6.91938 7.05979 7.33845 7.38178 7.45612 7.81155 7.86164 8.15679 8.22316 8.78588 8.93554 9.50567 10.98827 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.020835 B = 0.002464 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.555770 B =11360.345234 C =12051.555646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.071 3.929 3 H 0.108 0.892 4 O -0.318 6.318 5 C 0.461 3.539 6 O -0.510 6.510 7 C 0.127 3.873 8 N -0.719 5.719 9 C 0.548 3.452 10 O -0.536 6.536 11 C -0.195 4.195 12 C -0.152 4.152 13 C -0.146 4.146 14 C 0.508 3.492 15 O -0.518 6.518 16 N -0.595 5.595 17 C 0.075 3.925 18 C 0.247 3.753 19 C -0.531 4.531 20 H 0.057 0.943 21 C 0.062 3.938 22 N -0.893 5.893 23 Si 0.899 3.101 24 H -0.277 1.277 25 H -0.285 1.285 26 H -0.276 1.276 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.095 0.905 30 H 0.115 0.885 31 H 0.117 0.883 32 H 0.413 0.587 33 H 0.127 0.873 34 H 0.100 0.900 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.109 0.891 38 H 0.052 0.948 39 H 0.079 0.921 40 H 0.058 0.942 41 H 0.037 0.963 42 H 0.046 0.954 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.164 9.135 -22.580 25.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.012 3.988 3 H 0.126 0.874 4 O -0.232 6.232 5 C 0.304 3.696 6 O -0.399 6.399 7 C 0.002 3.998 8 N -0.375 5.375 9 C 0.335 3.665 10 O -0.413 6.413 11 C -0.216 4.216 12 C -0.189 4.189 13 C -0.184 4.184 14 C 0.292 3.708 15 O -0.393 6.393 16 N -0.328 5.328 17 C -0.068 4.068 18 C 0.128 3.872 19 C -0.569 4.569 20 H 0.075 0.925 21 C -0.140 4.140 22 N -0.532 5.532 23 Si 0.727 3.273 24 H -0.202 1.202 25 H -0.211 1.211 26 H -0.201 1.201 27 H 0.087 0.913 28 H 0.092 0.908 29 H 0.113 0.887 30 H 0.133 0.867 31 H 0.135 0.865 32 H 0.251 0.749 33 H 0.145 0.855 34 H 0.119 0.881 35 H 0.124 0.876 36 H 0.123 0.877 37 H 0.128 0.872 38 H 0.070 0.930 39 H 0.098 0.902 40 H 0.077 0.923 41 H 0.055 0.945 42 H 0.064 0.936 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.642 7.977 -22.531 24.807 hybrid contribution 0.766 1.135 0.727 1.550 sum -5.876 9.112 -21.805 24.352 Atomic orbital electron populations 1.22412 0.92204 1.04274 1.04403 1.22700 0.95824 0.97680 0.82554 0.87439 1.86590 1.76103 1.41108 1.19384 1.23469 0.74316 0.85897 0.85955 1.90639 1.48636 1.16449 1.84154 1.20632 1.04836 0.91242 0.83056 1.45685 1.68528 1.12643 1.10671 1.19656 0.75986 0.88960 0.81946 1.90735 1.49471 1.20100 1.80955 1.22146 1.09506 1.00143 0.89777 1.22980 0.93653 1.03954 0.98355 1.22997 0.96714 1.03596 0.95071 1.19733 0.81824 0.85458 0.83807 1.90722 1.36858 1.25924 1.85816 1.48064 1.49784 1.28357 1.06635 1.21893 0.93969 0.88026 1.02959 1.19362 0.94394 0.93758 0.79643 1.21372 1.04879 1.19300 1.11389 0.92491 1.24936 0.97996 0.94918 0.96192 1.69917 1.39071 1.25893 1.18324 0.86536 0.83783 0.79028 0.77958 1.20218 1.21099 1.20143 0.91342 0.90840 0.88693 0.86703 0.86481 0.74877 0.85523 0.88121 0.87600 0.87741 0.87246 0.92962 0.90246 0.92314 0.94538 0.93600 0.92558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.12 9.18 37.16 0.34 -1.78 16 2 C 0.07 1.11 2.18 -27.88 -0.06 1.05 16 3 H 0.11 1.61 6.42 -51.93 -0.33 1.28 16 4 O -0.32 -4.99 9.42 -45.89 -0.43 -5.42 16 5 C 0.46 5.96 8.00 36.01 0.29 6.25 16 6 O -0.51 -6.99 14.89 -18.75 -0.28 -7.27 16 7 C 0.13 1.34 6.27 -5.19 -0.03 1.31 16 8 N -0.72 -6.85 5.53 -61.47 -0.34 -7.19 16 9 C 0.55 5.65 7.61 -10.99 -0.08 5.57 16 10 O -0.54 -7.41 16.26 5.56 0.09 -7.32 16 11 C -0.19 -1.39 6.19 -91.77 -0.57 -1.96 16 12 C -0.15 -0.88 10.24 -26.69 -0.27 -1.15 16 13 C -0.15 -0.96 10.05 -26.69 -0.27 -1.22 16 14 C 0.51 10.60 7.15 -10.99 -0.08 10.52 16 15 O -0.52 -13.26 16.08 -14.11 -0.23 -13.48 16 16 N -0.59 -12.26 2.86 -182.95 -0.52 -12.79 16 17 C 0.08 1.12 8.80 59.85 0.53 1.64 16 18 C 0.25 6.33 5.16 -5.19 -0.03 6.30 16 19 C -0.53 -14.88 9.39 -34.44 -0.32 -15.20 16 20 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 21 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 22 N -0.89 -26.26 13.29 55.43 0.74 -25.52 16 23 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.09 1.01 4.53 -51.93 -0.24 0.77 16 30 H 0.12 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.12 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.41 3.47 7.44 -40.82 -0.30 3.17 16 33 H 0.13 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.11 0.88 7.67 -51.93 -0.40 0.48 16 38 H 0.05 0.64 6.95 -51.93 -0.36 0.27 16 39 H 0.08 1.21 8.07 -51.93 -0.42 0.79 16 40 H 0.06 0.72 6.01 -51.93 -0.31 0.41 16 41 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 42 H 0.05 1.33 7.42 -51.93 -0.39 0.94 16 43 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 368.68 15.07 5.56 5.56 Total: -1.00 -35.71 368.68 -7.19 -42.90 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -6.09 Total: 0.83 kcal Atomic # 6 Polarization: 13.64 SS G_CDS: -0.66 Total: 12.99 kcal Atomic # 7 Polarization: -45.38 SS G_CDS: -0.13 Total: -45.50 kcal Atomic # 8 Polarization: -32.64 SS G_CDS: -0.85 Total: -33.49 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.71 -7.19 -42.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915015639.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.653 kcal (2) G-P(sol) polarization free energy of solvation -35.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds