Wall clock time and date at job start Fri Apr 10 2020 18:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08992 * 109.47262 * 2 1 4 4 O 1.45203 * 109.47088 * 239.99943 * 2 1 3 5 5 C 1.34226 * 116.99798 * 90.00039 * 4 2 1 6 6 O 1.20824 * 119.99959 * 0.02562 * 5 4 2 7 7 C 1.50703 * 119.99900 * 179.97438 * 5 4 2 8 8 N 1.46505 * 109.47064 * 180.02562 * 7 5 4 9 9 C 1.34771 * 119.99622 * 179.97438 * 8 7 5 10 10 O 1.21280 * 120.00597 * 0.02562 * 9 8 7 11 11 C 1.50701 * 119.99622 * 179.97438 * 9 8 7 12 12 C 1.53000 * 117.50158 * 248.75065 * 11 9 8 13 13 C 1.52998 * 117.49874 * 180.08793 * 11 9 8 14 14 C 1.50702 * 109.47065 * 120.00387 * 2 1 3 15 15 O 1.21283 * 120.00151 * 119.99368 * 14 2 1 16 16 N 1.34775 * 119.99860 * 299.99703 * 14 2 1 17 17 C 1.46500 * 119.99890 * 0.02562 * 16 14 2 18 18 C 1.46501 * 120.00389 * 179.97438 * 16 14 2 19 19 C 1.50702 * 109.46389 * 89.99900 * 18 16 14 20 20 H 1.07998 * 120.00298 * 0.02562 * 19 18 16 21 21 C 1.37881 * 120.00003 * 179.97438 * 19 18 16 22 22 N 1.31517 * 119.99718 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00386 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46505 * 60.00514 * 23 21 19 25 25 H 1.48493 * 109.47098 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47148 * 300.00704 * 23 21 19 27 27 H 1.08999 * 109.46931 * 59.99719 * 1 2 3 28 28 H 1.09001 * 109.47469 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46989 * 300.00107 * 1 2 3 30 30 H 1.09002 * 109.47152 * 60.00249 * 7 5 4 31 31 H 1.09001 * 109.46980 * 300.00350 * 7 5 4 32 32 H 0.96996 * 119.99606 * 0.02562 * 8 7 5 33 33 H 1.08997 * 115.55243 * 34.42440 * 11 9 8 34 34 H 1.08997 * 117.49657 * 359.97438 * 12 11 9 35 35 H 1.08997 * 117.49954 * 145.02360 * 12 11 9 36 36 H 1.09002 * 117.50193 * 214.98041 * 13 11 9 37 37 H 1.09001 * 117.49982 * 359.97438 * 13 11 9 38 38 H 1.09003 * 109.47576 * 90.00340 * 17 16 14 39 39 H 1.09002 * 109.47255 * 209.99673 * 17 16 14 40 40 H 1.09000 * 109.47462 * 329.99640 * 17 16 14 41 41 H 1.08995 * 109.47779 * 210.00191 * 18 16 14 42 42 H 1.08997 * 109.47015 * 330.00881 * 18 16 14 43 43 H 0.96998 * 119.99661 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6845 -1.1856 5 6 2.2171 0.0640 -2.2811 6 8 1.9982 1.2518 -2.2503 7 6 2.7193 -0.5770 -3.5492 8 7 2.8583 0.4439 -4.5906 9 6 3.2961 0.0994 -5.8178 10 8 3.5746 -1.0558 -6.0602 11 6 3.4384 1.1496 -6.8893 12 6 2.4707 1.0871 -8.0727 13 6 3.9382 0.6950 -8.2620 14 6 2.0324 -0.7105 1.2304 15 8 2.7295 -1.6967 1.1191 16 7 1.7068 -0.2501 2.4545 17 6 0.8641 0.9408 2.5890 18 6 2.1946 -0.9410 3.6507 19 6 3.5223 -0.3580 4.0610 20 1 3.9588 0.4469 3.4884 21 6 4.1793 -0.8515 5.1682 22 7 3.6475 -1.8313 5.8659 23 14 5.8248 -0.1285 5.6773 24 1 5.6598 1.3174 5.9730 25 1 6.3194 -0.8288 6.8897 26 1 6.8034 -0.2995 4.5736 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 2.0105 -1.3373 -3.8774 31 1 3.6884 -1.0400 -3.3631 32 1 2.6359 1.3679 -4.3966 33 1 3.7468 2.1359 -6.5428 34 1 1.7314 0.2863 -8.0765 35 1 2.1427 2.0324 -8.5050 36 1 4.5750 1.3824 -8.8188 37 1 4.1645 -0.3636 -8.3900 38 1 -0.1838 0.6425 2.6225 39 1 1.1218 1.4663 3.5085 40 1 1.0273 1.5996 1.7360 41 1 1.4766 -0.8155 4.4611 42 1 2.3154 -2.0022 3.4335 43 1 4.1099 -2.1787 6.6446 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000915015639.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:00 Heat of formation + Delta-G solvation = -144.139339 kcal Electronic energy + Delta-G solvation = -25548.506594 eV Core-core repulsion = 21594.536128 eV Total energy + Delta-G solvation = -3953.970466 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.17018 -41.08951 -40.50527 -37.98770 -37.14655 -36.75443 -35.71059 -34.94353 -33.12301 -30.07648 -29.45699 -27.74397 -26.05719 -25.29556 -24.12653 -23.29705 -22.14590 -21.41715 -20.52421 -19.34297 -18.71835 -18.48974 -18.14021 -17.73092 -17.30825 -17.18169 -16.62930 -16.41972 -16.34753 -15.78988 -15.53758 -15.13390 -14.87226 -14.63152 -14.26050 -14.16793 -13.92814 -13.63701 -13.57641 -13.53716 -13.34402 -13.02568 -12.82774 -12.62716 -12.44519 -12.42902 -12.21453 -12.01002 -11.90323 -11.74637 -11.56330 -11.47126 -11.11066 -10.66128 -10.65646 -10.42023 -9.53735 -8.25074 -6.39680 0.81601 0.97536 1.35494 1.35657 1.39866 1.46824 1.59449 2.00595 2.31431 2.42056 2.90618 3.04967 3.28044 3.37663 3.65535 3.73646 3.81230 3.85096 3.98247 4.09766 4.18767 4.28186 4.31115 4.50585 4.61326 4.66329 4.76407 4.85747 4.91967 4.92910 4.99229 5.08554 5.10224 5.16225 5.20966 5.24491 5.49140 5.76118 6.01680 6.29239 6.35686 6.58345 6.68875 7.03639 7.18394 7.34061 8.81975 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.020835 B = 0.002464 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.555770 B =11360.345234 C =12051.555646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.081 3.919 3 H 0.121 0.879 4 O -0.339 6.339 5 C 0.467 3.533 6 O -0.514 6.514 7 C 0.130 3.870 8 N -0.711 5.711 9 C 0.544 3.456 10 O -0.578 6.578 11 C -0.202 4.202 12 C -0.139 4.139 13 C -0.152 4.152 14 C 0.497 3.503 15 O -0.580 6.580 16 N -0.598 5.598 17 C 0.067 3.933 18 C 0.260 3.740 19 C -0.547 4.547 20 H 0.053 0.947 21 C 0.009 3.991 22 N -0.926 5.926 23 Si 0.966 3.034 24 H -0.259 1.259 25 H -0.278 1.278 26 H -0.280 1.280 27 H 0.091 0.909 28 H 0.067 0.933 29 H 0.113 0.887 30 H 0.127 0.873 31 H 0.114 0.886 32 H 0.421 0.579 33 H 0.151 0.849 34 H 0.090 0.910 35 H 0.133 0.867 36 H 0.127 0.873 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.074 0.926 40 H 0.091 0.909 41 H 0.034 0.966 42 H 0.000 1.000 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.802 12.041 -23.838 27.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.023 3.977 3 H 0.139 0.861 4 O -0.254 6.254 5 C 0.310 3.690 6 O -0.403 6.403 7 C 0.005 3.995 8 N -0.367 5.367 9 C 0.333 3.667 10 O -0.458 6.458 11 C -0.222 4.222 12 C -0.176 4.176 13 C -0.189 4.189 14 C 0.284 3.716 15 O -0.460 6.460 16 N -0.331 5.331 17 C -0.075 4.075 18 C 0.139 3.861 19 C -0.585 4.585 20 H 0.071 0.929 21 C -0.191 4.191 22 N -0.565 5.565 23 Si 0.791 3.209 24 H -0.183 1.183 25 H -0.203 1.203 26 H -0.206 1.206 27 H 0.110 0.890 28 H 0.086 0.914 29 H 0.131 0.869 30 H 0.144 0.856 31 H 0.132 0.868 32 H 0.260 0.740 33 H 0.169 0.831 34 H 0.109 0.891 35 H 0.151 0.849 36 H 0.145 0.855 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.093 0.907 40 H 0.109 0.891 41 H 0.052 0.948 42 H 0.018 0.982 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.331 10.960 -23.792 27.202 hybrid contribution 0.930 0.215 1.093 1.451 sum -6.401 11.175 -22.699 26.098 Atomic orbital electron populations 1.22430 0.88953 1.04650 1.06418 1.22600 0.97990 0.96762 0.80358 0.86132 1.86591 1.76683 1.42134 1.19966 1.23738 0.73831 0.85726 0.85676 1.90627 1.48926 1.16557 1.84187 1.20635 1.04848 0.91653 0.82325 1.45664 1.68071 1.12740 1.10242 1.20277 0.74928 0.89107 0.82438 1.90717 1.51385 1.22046 1.81640 1.22245 1.10893 1.00049 0.89055 1.23090 0.92893 1.04815 0.96845 1.23062 0.97972 1.02935 0.94964 1.20695 0.80734 0.84898 0.85267 1.90682 1.39645 1.28781 1.86881 1.48038 1.50081 1.29582 1.05359 1.22265 0.94715 0.86244 1.04233 1.18845 0.93974 0.91778 0.81509 1.21656 1.06003 1.19324 1.11556 0.92916 1.25843 1.01748 0.95243 0.96226 1.70032 1.40678 1.26999 1.18778 0.85488 0.78832 0.79165 0.77457 1.18335 1.20254 1.20564 0.89013 0.91367 0.86856 0.85555 0.86802 0.73986 0.83087 0.89097 0.84920 0.85485 0.89450 0.89552 0.90721 0.89083 0.94787 0.98167 0.92302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.56 9.18 71.98 0.66 -2.90 16 2 C 0.08 2.43 2.18 29.85 0.07 2.49 16 3 H 0.12 3.30 6.42 -2.39 -0.02 3.29 16 4 O -0.34 -10.44 9.42 -45.03 -0.42 -10.86 16 5 C 0.47 11.47 8.00 71.24 0.57 12.04 16 6 O -0.51 -12.91 14.89 21.97 0.33 -12.59 16 7 C 0.13 2.65 6.27 85.63 0.54 3.19 16 8 N -0.71 -12.65 5.53 -466.78 -2.58 -15.23 16 9 C 0.54 10.80 7.61 87.66 0.67 11.47 16 10 O -0.58 -16.16 16.26 -3.03 -0.05 -16.21 16 11 C -0.20 -2.50 6.19 -11.54 -0.07 -2.57 16 12 C -0.14 -1.30 10.24 30.62 0.31 -0.99 16 13 C -0.15 -1.76 10.05 30.62 0.31 -1.46 16 14 C 0.50 20.99 7.15 87.66 0.63 21.62 16 15 O -0.58 -31.08 16.08 15.76 0.25 -30.83 16 16 N -0.60 -24.71 2.86 -851.13 -2.43 -27.14 16 17 C 0.07 1.83 8.80 127.77 1.12 2.95 16 18 C 0.26 13.78 5.16 85.63 0.44 14.22 16 19 C -0.55 -31.27 9.39 25.60 0.24 -31.03 16 20 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 21 C 0.01 0.51 5.46 84.66 0.46 0.97 16 22 N -0.93 -55.52 13.29 21.45 0.28 -55.23 16 23 Si 0.97 44.73 29.54 68.60 2.03 46.76 16 24 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 25 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 26 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 27 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.11 1.96 4.53 -2.39 -0.01 1.95 16 30 H 0.13 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 32 H 0.42 6.24 7.44 -92.71 -0.69 5.55 16 33 H 0.15 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.13 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.09 1.42 7.67 -2.39 -0.02 1.40 16 38 H 0.09 1.80 6.95 -2.39 -0.02 1.79 16 39 H 0.07 2.14 8.07 -2.39 -0.02 2.12 16 40 H 0.09 1.91 6.01 -2.39 -0.01 1.90 16 41 H 0.03 1.79 8.07 -2.39 -0.02 1.77 16 42 H 0.00 0.01 7.42 -2.39 -0.02 -0.01 16 43 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -81.21 368.68 3.70 -77.51 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: 0.35 Total: 13.83 kcal Atomic # 6 Polarization: 24.05 SS G_CDS: 5.95 Total: 30.00 kcal Atomic # 7 Polarization: -92.88 SS G_CDS: -4.73 Total: -97.60 kcal Atomic # 8 Polarization: -70.59 SS G_CDS: 0.11 Total: -70.49 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -81.21 3.70 -77.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915015639.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.633 kcal (2) G-P(sol) polarization free energy of solvation -81.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds