Wall clock time and date at job start Fri Apr 10 2020 18:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 119.99912 * 2 1 4 4 H 1.48506 * 109.46838 * 95.13961 * 3 2 1 5 5 H 1.48501 * 109.47170 * 215.13892 * 3 2 1 6 6 H 1.48499 * 109.47198 * 335.14260 * 3 2 1 7 7 C 1.38813 * 120.00222 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99632 * 8.83636 * 7 2 1 9 9 N 1.36938 * 119.99867 * 188.83738 * 7 2 1 10 10 C 1.47156 * 121.07752 * 36.57490 * 9 7 2 11 11 C 1.53279 * 108.56369 * 128.75981 * 10 9 7 12 12 O 1.43125 * 109.22959 * 52.97358 * 11 10 9 13 13 C 1.41880 * 114.37035 * 299.10402 * 12 11 10 14 14 C 1.54361 * 110.76190 * 183.36952 * 13 12 11 15 15 C 1.54466 * 102.86694 * 83.68085 * 14 13 12 16 16 N 1.47079 * 107.29977 * 21.48021 * 15 14 13 17 17 C 1.34784 * 125.62380 * 181.03654 * 16 15 14 18 18 O 1.21279 * 119.99594 * 174.43070 * 17 16 15 19 19 C 1.50700 * 120.00299 * 354.43129 * 17 16 15 20 20 C 1.53000 * 115.54905 * 292.61511 * 19 17 16 21 21 F 1.39899 * 109.46966 * 182.61177 * 20 19 17 22 22 C 1.52998 * 117.49935 * 146.94322 * 19 17 16 23 23 C 1.53003 * 117.49663 * 78.28430 * 19 17 16 24 24 C 1.47561 * 108.74754 * 1.00368 * 16 15 14 25 25 C 1.47342 * 121.06833 * 216.29320 * 9 7 2 26 26 H 0.97001 * 120.00068 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.61641 * 248.48252 * 10 9 7 28 28 H 1.08997 * 109.61904 * 9.03426 * 10 9 7 29 29 H 1.08995 * 109.51120 * 172.90786 * 11 10 9 30 30 H 1.09007 * 109.50625 * 293.05033 * 11 10 9 31 31 H 1.09000 * 110.73095 * 202.02334 * 14 13 12 32 32 H 1.09002 * 110.73308 * 325.33659 * 14 13 12 33 33 H 1.08996 * 109.88043 * 262.04932 * 15 14 13 34 34 H 1.09004 * 109.99781 * 140.97309 * 15 14 13 35 35 H 1.08998 * 109.47302 * 302.61643 * 20 19 17 36 36 H 1.09004 * 109.47170 * 62.61299 * 20 19 17 37 37 H 1.08997 * 117.50058 * 359.97438 * 22 19 17 38 38 H 1.08997 * 117.50080 * 145.02364 * 22 19 17 39 39 H 1.09005 * 117.49285 * 214.98150 * 23 19 17 40 40 H 1.08996 * 117.50231 * 359.97347 * 23 19 17 41 41 H 1.08999 * 110.38108 * 217.86138 * 24 16 15 42 42 H 1.09005 * 110.47473 * 95.55543 * 24 16 15 43 43 H 1.09001 * 109.68053 * 348.94664 * 25 9 7 44 44 H 1.08997 * 109.67665 * 109.49233 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.6063 1.9837 1.3945 5 1 3.4892 1.4740 -0.8058 6 1 1.3975 2.6816 -0.5885 7 6 2.0103 -1.2021 -0.0005 8 1 1.4799 -2.1318 -0.1446 9 7 3.3675 -1.2092 0.1817 10 6 4.0152 -0.2620 1.1030 11 6 4.9237 -1.0497 2.0535 12 8 5.8078 -1.8732 1.2861 13 6 5.1540 -2.8322 0.4701 14 6 6.1826 -3.7270 -0.2537 15 6 6.5090 -4.8024 0.8061 16 7 5.3893 -4.8310 1.7594 17 6 5.3029 -5.6247 2.8453 18 8 4.3789 -5.4939 3.6199 19 6 6.3544 -6.6745 3.0970 20 6 6.3868 -7.8297 2.0943 21 9 7.3635 -8.7542 2.4795 22 6 6.7006 -6.9928 4.5529 23 6 7.6891 -6.2110 3.6842 24 6 4.3766 -3.8469 1.3312 25 6 4.2258 -2.1695 -0.5339 26 1 -0.4850 0.8401 0.0004 27 1 4.6112 0.4519 0.5345 28 1 3.2551 0.2672 1.6777 29 1 5.5064 -0.3554 2.6589 30 1 4.3138 -1.6773 2.7034 31 1 5.7420 -4.1812 -1.1412 32 1 7.0750 -3.1573 -0.5129 33 1 7.4315 -4.5430 1.3255 34 1 6.6142 -5.7766 0.3285 35 1 5.4128 -8.3183 2.0713 36 1 6.6230 -7.4435 1.1027 37 1 6.1681 -6.4427 5.3287 38 1 6.9518 -8.0251 4.7964 39 1 8.5902 -6.7293 3.3563 40 1 7.8068 -5.1467 3.8880 41 1 3.9380 -3.3520 2.1977 42 1 3.6006 -4.3316 0.7386 43 1 3.6071 -2.9267 -1.0157 44 1 4.8164 -1.6451 -1.2850 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972545902.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:45 Heat of formation + Delta-G solvation = -84.666193 kcal Electronic energy + Delta-G solvation = -27666.480101 eV Core-core repulsion = 23727.461374 eV Total energy + Delta-G solvation = -3939.018727 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.164 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -48.73587 -41.84950 -40.51098 -37.88365 -37.40365 -36.34436 -33.77245 -33.25877 -30.60764 -29.89806 -29.07230 -27.67088 -25.30574 -24.94795 -23.53605 -23.15958 -22.67920 -20.69170 -20.04018 -18.97623 -18.49947 -17.81939 -17.43252 -17.19295 -17.05281 -16.77047 -16.20102 -16.02726 -15.93710 -15.78009 -15.63799 -15.27265 -14.71672 -14.65487 -14.47854 -13.89088 -13.88340 -13.55028 -13.49090 -13.16199 -13.01358 -12.86991 -12.61139 -12.53207 -12.47137 -12.37178 -12.14783 -12.10055 -11.64671 -11.54402 -11.28598 -11.17898 -11.02544 -10.92735 -10.58595 -9.73611 -8.83620 -8.21085 -5.68900 1.27492 1.33969 1.37734 1.47496 1.74681 2.36921 2.51905 2.62273 2.99862 3.12850 3.28502 3.36994 3.54745 3.57234 3.68135 3.75172 3.87252 3.97176 4.08247 4.13646 4.19867 4.31143 4.38167 4.44723 4.55477 4.60286 4.62322 4.64537 4.68930 4.76904 4.77973 4.84782 4.87031 4.89795 4.94936 5.08238 5.11243 5.16185 5.21057 5.83978 6.08685 6.20178 6.40656 6.81088 6.96984 7.49329 7.94260 8.97928 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.026612 B = 0.003665 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.890605 B = 7637.132122 C = 7756.713979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.960 5.960 2 C -0.029 4.029 3 Si 0.958 3.042 4 H -0.270 1.270 5 H -0.257 1.257 6 H -0.310 1.310 7 C -0.253 4.253 8 H 0.048 0.952 9 N -0.624 5.624 10 C 0.082 3.918 11 C 0.054 3.946 12 O -0.363 6.363 13 C 0.093 3.907 14 C -0.106 4.106 15 C 0.101 3.899 16 N -0.605 5.605 17 C 0.561 3.439 18 O -0.587 6.587 19 C -0.201 4.201 20 C 0.111 3.889 21 F -0.210 7.210 22 C -0.146 4.146 23 C -0.127 4.127 24 C 0.094 3.906 25 C 0.130 3.870 26 H 0.263 0.737 27 H 0.045 0.955 28 H 0.061 0.939 29 H 0.119 0.881 30 H 0.035 0.965 31 H 0.115 0.885 32 H 0.114 0.886 33 H 0.087 0.913 34 H 0.103 0.897 35 H 0.083 0.917 36 H 0.111 0.889 37 H 0.086 0.914 38 H 0.123 0.877 39 H 0.133 0.867 40 H 0.098 0.902 41 H 0.047 0.953 42 H 0.069 0.931 43 H 0.074 0.926 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.595 -12.971 1.310 25.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.224 4.224 3 Si 0.787 3.213 4 H -0.197 1.197 5 H -0.181 1.181 6 H -0.239 1.239 7 C -0.382 4.382 8 H 0.065 0.935 9 N -0.350 5.350 10 C -0.042 4.042 11 C -0.024 4.024 12 O -0.282 6.282 13 C 0.051 3.949 14 C -0.144 4.144 15 C -0.021 4.021 16 N -0.337 5.337 17 C 0.350 3.650 18 O -0.467 6.467 19 C -0.205 4.205 20 C 0.056 3.944 21 F -0.191 7.191 22 C -0.183 4.183 23 C -0.164 4.164 24 C -0.029 4.029 25 C 0.005 3.995 26 H 0.072 0.928 27 H 0.063 0.937 28 H 0.079 0.921 29 H 0.137 0.863 30 H 0.054 0.946 31 H 0.134 0.866 32 H 0.132 0.868 33 H 0.105 0.895 34 H 0.121 0.879 35 H 0.102 0.898 36 H 0.128 0.872 37 H 0.105 0.895 38 H 0.141 0.859 39 H 0.151 0.849 40 H 0.116 0.884 41 H 0.065 0.935 42 H 0.087 0.913 43 H 0.092 0.908 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 21.193 -12.875 1.766 24.860 hybrid contribution -1.256 1.145 0.358 1.737 sum 19.938 -11.730 2.125 23.230 Atomic orbital electron populations 1.69899 1.07566 1.27485 1.55577 1.26164 0.95893 1.01592 0.98756 0.85783 0.78105 0.79109 0.78342 1.19662 1.18146 1.23900 1.18710 0.82074 0.92561 1.44858 0.93464 1.44430 1.02782 1.40042 1.47709 1.22151 0.95942 0.93374 0.92766 1.23025 0.92993 0.93461 0.92912 1.87666 1.32808 1.48522 1.59191 1.22334 0.93864 0.87856 0.90849 1.22691 0.99568 0.94514 0.97650 1.22432 0.88963 1.00837 0.89823 1.48551 1.21811 1.37618 1.25697 1.19477 0.85282 0.81102 0.79139 1.90711 1.37031 1.71839 1.47158 1.21971 0.99358 0.99004 1.00145 1.21312 0.90864 0.85254 0.96985 1.92760 1.65528 1.67784 1.93076 1.23077 1.01591 1.03120 0.90498 1.23178 0.91689 1.01401 1.00169 1.22544 0.91670 0.90096 0.98623 1.21496 0.92272 0.92682 0.93080 0.92774 0.93687 0.92125 0.86305 0.94644 0.86648 0.86777 0.89500 0.87930 0.89829 0.87162 0.89503 0.85917 0.84878 0.88380 0.93461 0.91303 0.90755 0.92976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.34 13.97 21.65 0.30 -60.04 16 2 C -0.03 -1.66 5.38 84.86 0.46 -1.21 16 3 Si 0.96 46.01 24.27 68.60 1.67 47.68 16 4 H -0.27 -12.19 6.50 99.48 0.65 -11.54 16 5 H -0.26 -11.68 6.52 99.48 0.65 -11.03 16 6 H -0.31 -15.19 7.11 99.48 0.71 -14.48 16 7 C -0.25 -14.15 10.09 84.03 0.85 -13.30 16 8 H 0.05 2.93 8.06 -2.91 -0.02 2.91 16 9 N -0.62 -28.50 2.67 -699.65 -1.87 -30.37 16 10 C 0.08 3.41 4.34 86.35 0.37 3.79 16 11 C 0.05 1.87 6.78 72.08 0.49 2.35 16 12 O -0.36 -11.54 10.28 -148.95 -1.53 -13.07 16 13 C 0.09 2.73 0.83 -10.30 -0.01 2.72 16 14 C -0.11 -1.89 6.12 31.55 0.19 -1.69 16 15 C 0.10 1.64 6.36 86.77 0.55 2.19 16 16 N -0.60 -15.88 3.33 -812.56 -2.71 -18.59 16 17 C 0.56 16.30 7.09 87.66 0.62 16.93 16 18 O -0.59 -23.44 16.99 -3.03 -0.05 -23.49 16 19 C -0.20 -3.96 1.76 -52.93 -0.09 -4.06 16 20 C 0.11 1.62 7.54 71.98 0.54 2.16 16 21 F -0.21 -3.36 15.93 44.97 0.72 -2.65 16 22 C -0.15 -2.78 9.49 30.62 0.29 -2.49 16 23 C -0.13 -1.95 9.68 30.62 0.30 -1.66 16 24 C 0.09 3.12 5.87 86.56 0.51 3.63 16 25 C 0.13 4.61 5.37 85.87 0.46 5.07 16 26 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 27 H 0.05 1.80 6.68 -2.39 -0.02 1.78 16 28 H 0.06 2.74 5.02 -2.39 -0.01 2.73 16 29 H 0.12 3.35 8.14 -2.39 -0.02 3.33 16 30 H 0.04 1.37 6.25 -2.38 -0.01 1.35 16 31 H 0.12 1.58 8.00 -2.39 -0.02 1.56 16 32 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.10 1.00 6.13 -2.38 -0.01 0.99 16 35 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.11 1.05 6.01 -2.39 -0.01 1.04 16 37 H 0.09 2.01 8.03 -2.39 -0.02 1.99 16 38 H 0.12 1.95 7.70 -2.39 -0.02 1.93 16 39 H 0.13 1.44 7.86 -2.38 -0.02 1.42 16 40 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.05 1.96 5.95 -2.39 -0.01 1.95 16 42 H 0.07 2.40 7.80 -2.38 -0.02 2.38 16 43 H 0.07 2.62 7.69 -2.39 -0.02 2.60 16 44 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -75.77 342.60 2.95 -72.82 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: 0.89 Total: 13.26 kcal Atomic # 6 Polarization: 8.91 SS G_CDS: 5.53 Total: 14.44 kcal Atomic # 7 Polarization: -104.72 SS G_CDS: -4.28 Total: -109.00 kcal Atomic # 8 Polarization: -34.98 SS G_CDS: -1.58 Total: -36.56 kcal Atomic # 9 Polarization: -3.36 SS G_CDS: 0.72 Total: -2.65 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 1.67 Total: 47.68 kcal Total: -75.77 2.95 -72.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972545902.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.845 kcal (2) G-P(sol) polarization free energy of solvation -75.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds