Wall clock time and date at job start Fri Apr 10 2020 18:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 120.00158 * 2 1 4 4 H 1.48507 * 109.47153 * 274.99154 * 3 2 1 5 5 H 1.48498 * 109.47040 * 34.98956 * 3 2 1 6 6 H 1.48500 * 109.47302 * 154.99370 * 3 2 1 7 7 C 1.38816 * 120.00329 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00309 * 187.04899 * 7 2 1 9 9 N 1.36946 * 119.99624 * 7.04131 * 7 2 1 10 10 C 1.47138 * 125.60573 * 354.74551 * 9 7 2 11 11 C 1.54584 * 107.32597 * 179.09952 * 10 9 7 12 12 C 1.53713 * 102.94985 * 339.03237 * 11 10 9 13 13 C 1.52884 * 111.74850 * 154.43850 * 12 11 10 14 14 C 1.54756 * 104.40742 * 121.73727 * 13 12 11 15 15 N 1.48280 * 104.66578 * 23.67202 * 14 13 12 16 16 C 1.34775 * 127.71658 * 141.29773 * 15 14 13 17 17 O 1.21290 * 119.99734 * 179.97438 * 16 15 14 18 18 C 1.50698 * 120.00247 * 359.97438 * 16 15 14 19 19 F 1.39902 * 110.45505 * 54.29780 * 18 16 15 20 20 C 1.54513 * 110.51072 * 176.90258 * 18 16 15 21 21 C 1.54482 * 104.06019 * 118.64470 * 20 18 16 22 22 O 1.44421 * 104.80236 * 23.98011 * 21 20 18 23 23 C 1.44638 * 105.37197 * 319.56079 * 22 21 20 24 24 C 1.48489 * 104.56358 * 321.28012 * 15 14 13 25 25 C 1.47702 * 125.60443 * 174.78685 * 9 7 2 26 26 H 0.97003 * 120.00127 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.86910 * 59.67269 * 10 9 7 28 28 H 1.08997 * 109.87181 * 298.53470 * 10 9 7 29 29 H 1.09001 * 110.74561 * 97.44752 * 11 10 9 30 30 H 1.09003 * 110.75075 * 220.61910 * 11 10 9 31 31 H 1.08998 * 110.44547 * 240.46433 * 13 12 11 32 32 H 1.08997 * 110.44833 * 2.87763 * 13 12 11 33 33 H 1.09004 * 110.39560 * 142.46615 * 14 13 12 34 34 H 1.08993 * 110.39904 * 264.88075 * 14 13 12 35 35 H 1.09003 * 110.50635 * 237.28891 * 20 18 16 36 36 H 1.08996 * 110.51248 * 359.86042 * 20 18 16 37 37 H 1.09003 * 110.36582 * 142.80991 * 21 20 18 38 38 H 1.08997 * 110.37278 * 265.14134 * 21 20 18 39 39 H 1.08995 * 110.34205 * 281.60233 * 23 22 21 40 40 H 1.09000 * 110.51244 * 159.18617 * 23 22 21 41 41 H 1.09000 * 110.46910 * 279.53793 * 24 15 14 42 42 H 1.08993 * 110.47337 * 156.93189 * 24 15 14 43 43 H 1.08994 * 110.39504 * 321.36852 * 25 9 7 44 44 H 1.09005 * 110.38851 * 83.63962 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3922 2.1073 -1.3948 5 1 1.5044 2.6199 0.8028 6 1 3.5965 1.4120 0.5918 7 6 2.0103 -1.2021 -0.0005 8 1 3.0841 -1.2057 0.1142 9 7 1.3333 -2.3836 -0.1465 10 6 -0.1296 -2.5315 -0.2017 11 6 -0.4333 -4.0347 -0.3958 12 6 0.8835 -4.5808 -0.9705 13 6 1.0588 -6.0695 -0.6695 14 6 1.1984 -6.7301 -2.0620 15 7 1.6782 -5.6417 -2.9474 16 6 2.5829 -5.7270 -3.9428 17 8 2.8740 -4.7394 -4.5839 18 6 3.2327 -7.0493 -4.2592 19 9 2.2609 -8.0282 -4.4926 20 6 4.1691 -6.9138 -5.4807 21 6 5.5644 -7.2775 -4.9262 22 8 5.2987 -8.0998 -3.7691 23 6 4.1702 -7.4806 -3.1096 24 6 0.9388 -4.4370 -2.4926 25 6 1.9516 -3.7189 -0.2733 26 1 -0.4850 0.8401 0.0004 27 1 -0.5281 -1.9616 -1.0412 28 1 -0.5729 -2.1811 0.7303 29 1 -0.6641 -4.5083 0.5585 30 1 -1.2510 -4.1754 -1.1028 31 1 1.9590 -6.2348 -0.0777 32 1 0.1843 -6.4580 -0.1476 33 1 1.9269 -7.5402 -2.0268 34 1 0.2326 -7.1009 -2.4051 35 1 3.8763 -7.6113 -6.2656 36 1 4.1601 -5.8910 -5.8573 37 1 6.1330 -7.8384 -5.6680 38 1 6.1039 -6.3761 -4.6355 39 1 4.4954 -6.6108 -2.5388 40 1 3.6681 -8.1965 -2.4589 41 1 -0.0674 -4.4266 -2.9114 42 1 1.4778 -3.5313 -2.7705 43 1 2.8525 -3.6639 -0.8844 44 1 2.1856 -4.1242 0.7112 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041598335.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:15 Heat of formation + Delta-G solvation = -85.330814 kcal Electronic energy + Delta-G solvation = -27640.660112 eV Core-core repulsion = 23701.612565 eV Total energy + Delta-G solvation = -3939.047547 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.164 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -48.20028 -40.46720 -39.33181 -38.13916 -35.80621 -32.79856 -32.03835 -30.73227 -29.71702 -29.16781 -28.06448 -26.01016 -24.63279 -23.62283 -22.45974 -22.16786 -20.27779 -19.60580 -18.89546 -17.89267 -17.16097 -16.81294 -16.32493 -16.07110 -15.62560 -15.44007 -14.76114 -14.67163 -14.35946 -14.34411 -14.15505 -13.73512 -13.59987 -13.11241 -12.96987 -12.75710 -12.28812 -12.15261 -11.96595 -11.90277 -11.68309 -11.52677 -11.45216 -11.30811 -11.27531 -10.89900 -10.80608 -10.20901 -10.19849 -10.07165 -9.99327 -9.89526 -9.76929 -9.65191 -8.77915 -8.57331 -6.83848 -5.72982 -3.05090 2.26761 2.63049 3.40977 3.44139 3.46714 3.47879 3.68132 3.98434 4.16974 4.29722 4.49258 4.62217 4.72325 4.77873 4.84464 4.88707 5.10857 5.21027 5.27394 5.33972 5.38254 5.48410 5.49588 5.55324 5.60115 5.71303 5.77755 5.85631 5.95253 5.99056 6.13043 6.24961 6.28801 6.29981 6.47171 6.51817 6.68770 6.77518 7.40435 7.54031 7.60524 7.81329 7.86973 8.24617 9.21354 9.81552 10.47281 11.39086 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.018771 B = 0.003890 C = 0.003515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.324148 B = 7195.438989 C = 7963.667441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.005 4.005 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.229 4.229 8 H 0.077 0.923 9 N -0.605 5.605 10 C 0.176 3.824 11 C -0.131 4.131 12 C -0.087 4.087 13 C -0.120 4.120 14 C 0.097 3.903 15 N -0.610 5.610 16 C 0.523 3.477 17 O -0.517 6.517 18 C 0.076 3.924 19 F -0.183 7.183 20 C -0.171 4.171 21 C 0.045 3.955 22 O -0.364 6.364 23 C 0.035 3.965 24 C 0.127 3.873 25 C 0.151 3.849 26 H 0.252 0.748 27 H 0.048 0.952 28 H 0.041 0.959 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.116 0.884 37 H 0.102 0.898 38 H 0.071 0.929 39 H 0.086 0.914 40 H 0.114 0.886 41 H 0.073 0.927 42 H 0.095 0.905 43 H 0.037 0.963 44 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.010 -18.345 -6.515 19.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.202 4.202 3 Si 0.739 3.261 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.357 4.357 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.051 3.949 11 C -0.170 4.170 12 C -0.089 4.089 13 C -0.159 4.159 14 C -0.026 4.026 15 N -0.343 5.343 16 C 0.308 3.692 17 O -0.393 6.393 18 C 0.054 3.946 19 F -0.163 7.163 20 C -0.209 4.209 21 C -0.031 4.031 22 O -0.282 6.282 23 C -0.043 4.043 24 C 0.006 3.994 25 C 0.025 3.975 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.059 0.941 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.115 0.885 36 H 0.135 0.865 37 H 0.120 0.880 38 H 0.089 0.911 39 H 0.104 0.896 40 H 0.132 0.868 41 H 0.091 0.909 42 H 0.113 0.887 43 H 0.055 0.945 44 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 4.279 -17.788 -6.865 19.541 hybrid contribution 0.083 0.972 -0.035 0.976 sum 4.362 -16.815 -6.900 18.692 Atomic orbital electron populations 1.69966 1.04894 1.25029 1.56816 1.24790 0.95674 0.97600 1.02090 0.86147 0.78710 0.83678 0.77544 1.21591 1.21770 1.20656 1.19041 0.91090 0.82563 1.43036 0.90540 1.44564 1.01590 1.00842 1.86140 1.21240 0.84421 0.88315 1.00900 1.22827 0.94635 0.99926 0.99566 1.21717 0.98996 0.93973 0.94165 1.22426 1.03095 0.94832 0.95505 1.22663 0.99964 0.89915 0.90033 1.49123 1.39979 1.12750 1.32458 1.19896 0.79435 0.89827 0.80004 1.90754 1.61692 1.37253 1.49620 1.22491 0.88081 0.84981 0.99071 1.92927 1.64546 1.63242 1.95623 1.23568 0.94045 1.06710 0.96614 1.23506 0.95863 0.95717 0.88021 1.89209 1.48988 1.49948 1.40069 1.24082 0.86584 1.00008 0.93633 1.22294 0.96055 0.88125 0.92899 1.21476 0.93637 0.86398 0.95960 0.93774 0.93400 0.94060 0.91884 0.91920 0.90599 0.89826 0.90646 0.90448 0.88528 0.86528 0.87955 0.91094 0.89638 0.86831 0.90882 0.88678 0.94505 0.96162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.83 10.35 55.49 0.57 -26.26 16 2 C -0.01 -0.15 5.48 -17.43 -0.10 -0.24 16 3 Si 0.91 22.27 29.56 -169.99 -5.02 17.25 16 4 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.23 -6.38 10.27 -15.05 -0.15 -6.53 16 8 H 0.08 2.08 7.84 -52.49 -0.41 1.67 16 9 N -0.60 -15.09 3.41 -170.20 -0.58 -15.67 16 10 C 0.18 4.10 5.34 -2.86 -0.02 4.09 16 11 C -0.13 -2.22 5.81 -25.53 -0.15 -2.37 16 12 C -0.09 -1.37 0.82 -153.72 -0.13 -1.50 16 13 C -0.12 -1.38 6.33 -25.87 -0.16 -1.55 16 14 C 0.10 1.04 6.35 -2.14 -0.01 1.03 16 15 N -0.61 -8.66 3.33 -169.55 -0.56 -9.22 16 16 C 0.52 7.84 6.88 -10.99 -0.08 7.76 16 17 O -0.52 -9.51 15.57 5.55 0.09 -9.42 16 18 C 0.08 0.90 1.18 -90.20 -0.11 0.80 16 19 F -0.18 -2.22 15.97 2.25 0.04 -2.18 16 20 C -0.17 -1.78 6.52 -25.16 -0.16 -1.95 16 21 C 0.05 0.42 7.64 37.94 0.29 0.71 16 22 O -0.36 -4.07 11.65 -35.23 -0.41 -4.49 16 23 C 0.03 0.36 6.17 37.94 0.23 0.60 16 24 C 0.13 2.09 6.11 -2.95 -0.02 2.08 16 25 C 0.15 3.02 5.97 -2.90 -0.02 3.00 16 26 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 27 H 0.05 1.25 7.30 -51.93 -0.38 0.87 16 28 H 0.04 1.07 7.60 -51.93 -0.39 0.68 16 29 H 0.06 0.98 7.89 -51.93 -0.41 0.57 16 30 H 0.06 0.96 7.67 -51.93 -0.40 0.56 16 31 H 0.08 0.84 7.68 -51.93 -0.40 0.44 16 32 H 0.08 0.83 7.63 -51.93 -0.40 0.43 16 33 H 0.08 0.67 5.27 -51.93 -0.27 0.40 16 34 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.10 0.88 8.06 -51.93 -0.42 0.46 16 36 H 0.12 1.35 6.51 -51.93 -0.34 1.01 16 37 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.09 0.91 7.86 -51.93 -0.41 0.50 16 40 H 0.11 0.99 6.81 -51.93 -0.35 0.63 16 41 H 0.07 1.14 7.62 -51.93 -0.40 0.75 16 42 H 0.09 1.93 7.60 -51.93 -0.39 1.53 16 43 H 0.04 0.76 8.00 -51.93 -0.42 0.35 16 44 H 0.02 0.40 7.94 -51.93 -0.41 -0.01 16 LS Contribution 344.00 15.07 5.18 5.18 Total: -1.00 -32.35 344.00 -7.87 -40.22 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -6.60 Total: -1.32 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: -0.57 Total: 5.92 kcal Atomic # 7 Polarization: -50.58 SS G_CDS: -0.57 Total: -51.16 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: -0.32 Total: -13.91 kcal Atomic # 9 Polarization: -2.22 SS G_CDS: 0.04 Total: -2.18 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.35 -7.87 -40.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041598335.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.107 kcal (2) G-P(sol) polarization free energy of solvation -32.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds