Wall clock time and date at job start Fri Apr 10 2020 18:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 120.00049 * 2 1 4 4 H 1.48490 * 109.47369 * 275.55557 * 3 2 1 5 5 H 1.48504 * 109.46780 * 35.55498 * 3 2 1 6 6 H 1.48502 * 109.47127 * 155.54959 * 3 2 1 7 7 C 1.38806 * 119.99915 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00273 * 336.55589 * 7 2 1 9 9 N 1.36948 * 119.99912 * 156.56075 * 7 2 1 10 10 C 1.43420 * 120.63551 * 320.50202 * 9 7 2 11 11 C 1.55328 * 116.23679 * 269.33443 * 10 9 7 12 12 C 1.55190 * 108.87444 * 319.46371 * 11 10 9 13 13 O 1.39637 * 110.56805 * 322.14301 * 12 11 10 14 14 C 1.42385 * 108.63536 * 101.17280 * 13 12 11 15 15 H 1.09005 * 108.62010 * 28.42474 * 14 13 12 16 16 C 1.52991 * 108.62268 * 146.33904 * 14 13 12 17 17 N 1.46499 * 109.47422 * 300.00002 * 16 14 13 18 18 C 1.34770 * 120.00192 * 179.97438 * 17 16 14 19 19 O 1.21278 * 120.00343 * 359.72044 * 18 17 16 20 20 C 1.50708 * 119.99969 * 180.02562 * 18 17 16 21 21 H 1.09003 * 110.48571 * 319.01943 * 20 18 17 22 22 C 1.54102 * 110.54855 * 81.72137 * 20 18 17 23 23 N 1.47389 * 103.69692 * 118.56111 * 22 20 18 24 24 C 1.33944 * 109.21807 * 0.11108 * 23 22 20 25 25 O 1.21585 * 123.04476 * 179.90393 * 24 23 22 26 26 N 1.33954 * 113.91251 * 359.92752 * 24 23 22 27 27 C 1.46920 * 113.78579 * 267.45640 * 14 13 12 28 28 H 0.97003 * 119.99944 * 359.97438 * 1 2 3 29 29 H 1.08997 * 108.12517 * 147.57542 * 10 9 7 30 30 H 1.09005 * 107.96610 * 30.96285 * 10 9 7 31 31 H 1.09000 * 109.57019 * 199.64499 * 11 10 9 32 32 H 1.09005 * 109.67457 * 79.34485 * 11 10 9 33 33 H 1.09001 * 109.25472 * 201.85878 * 12 11 10 34 34 H 1.08997 * 109.22345 * 82.40447 * 12 11 10 35 35 H 1.08996 * 109.47408 * 179.97438 * 16 14 13 36 36 H 1.09001 * 109.47188 * 60.00179 * 16 14 13 37 37 H 0.97004 * 119.99724 * 0.02562 * 17 16 14 38 38 H 1.08998 * 110.54640 * 237.18455 * 22 20 18 39 39 H 1.08991 * 110.55019 * 0.02562 * 22 20 18 40 40 H 0.97000 * 125.37433 * 180.02562 * 23 22 20 41 41 H 0.97003 * 125.40980 * 180.02562 * 26 24 23 42 42 H 1.09006 * 109.98999 * 176.12169 * 27 14 13 43 43 H 1.08996 * 109.99225 * 297.48063 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3803 2.1142 -1.3934 5 1 1.5112 2.6159 0.8142 6 1 3.6015 1.4092 0.5795 7 6 2.0102 -1.2021 -0.0005 8 1 1.5371 -2.0990 0.3711 9 7 3.2949 -1.2508 -0.4723 10 6 3.6761 -0.4999 -1.6333 11 6 3.5350 -1.2274 -2.9984 12 6 4.0017 -2.6983 -2.8341 13 8 5.1029 -2.7709 -1.9784 14 6 4.6550 -3.1966 -0.6956 15 1 3.7639 -3.8110 -0.8243 16 6 5.7491 -4.0531 -0.0555 17 7 6.0153 -5.2184 -0.9025 18 6 6.9485 -6.1190 -0.5359 19 8 7.5715 -5.9621 0.4928 20 6 7.2227 -7.3174 -1.4076 21 1 6.2906 -7.7278 -1.7961 22 6 8.1708 -6.9406 -2.5625 23 7 9.3511 -7.7943 -2.3377 24 6 9.1491 -8.5482 -1.2492 25 8 9.9663 -9.3478 -0.8355 26 7 7.9650 -8.3419 -0.6579 27 6 4.3312 -2.0908 0.2160 28 1 -0.4850 0.8401 0.0004 29 1 4.7169 -0.1986 -1.5155 30 1 3.0657 0.4026 -1.6653 31 1 4.1548 -0.7288 -3.7436 32 1 2.4932 -1.2085 -3.3184 33 1 4.2774 -3.0991 -3.8095 34 1 3.1852 -3.2898 -2.4201 35 1 5.4204 -4.3865 0.9288 36 1 6.6596 -3.4626 0.0467 37 1 5.5204 -5.3414 -1.7277 38 1 7.7106 -7.1664 -3.5244 39 1 8.4437 -5.8870 -2.5053 40 1 10.1475 -7.8086 -2.8914 41 1 7.6477 -8.7959 0.1384 42 1 3.9317 -2.4835 1.1511 43 1 5.2233 -1.4958 0.4117 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073752522.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:40 Heat of formation + Delta-G solvation = -87.264482 kcal Electronic energy + Delta-G solvation = -26671.933543 eV Core-core repulsion = 22752.722107 eV Total energy + Delta-G solvation = -3919.211436 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.31711 -40.99677 -40.03860 -37.38125 -37.01872 -36.01848 -33.98430 -33.86366 -33.58971 -30.95492 -29.92589 -27.37025 -27.09178 -24.98628 -23.79651 -22.81033 -22.51835 -21.86311 -21.42102 -19.19289 -18.81305 -18.59940 -17.62541 -17.43070 -17.38527 -17.07592 -16.68087 -16.12376 -16.00224 -15.95353 -15.65453 -15.17473 -15.02413 -14.90296 -14.67625 -14.29569 -14.10186 -13.91600 -13.87671 -13.67887 -13.30900 -13.01569 -12.77189 -12.62350 -12.31992 -11.98980 -11.73335 -11.61277 -11.56867 -11.37645 -11.28016 -10.62289 -10.55193 -10.38835 -10.11693 -9.82539 -8.73717 -8.23474 -5.63248 1.29347 1.40052 1.42454 1.50266 1.70473 1.97809 2.22540 2.40120 2.96309 3.03742 3.07327 3.23022 3.34401 3.62180 3.99564 4.03134 4.06444 4.25935 4.32853 4.37778 4.43688 4.59155 4.61264 4.67828 4.72556 4.73460 4.76978 4.85504 5.01580 5.13109 5.15345 5.22487 5.31498 5.37924 5.91325 5.93593 6.14763 6.21439 6.28817 6.35078 6.54320 6.97640 7.18666 7.52382 7.59605 8.06950 8.95513 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.033760 B = 0.002791 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.180093 B =10031.275964 C =10334.135214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.010 4.010 3 Si 0.936 3.064 4 H -0.279 1.279 5 H -0.309 1.309 6 H -0.265 1.265 7 C -0.255 4.255 8 H 0.049 0.951 9 N -0.611 5.611 10 C 0.142 3.858 11 C -0.168 4.168 12 C 0.070 3.930 13 O -0.352 6.352 14 C 0.075 3.925 15 H 0.072 0.928 16 C 0.127 3.873 17 N -0.698 5.698 18 C 0.500 3.500 19 O -0.577 6.577 20 C 0.107 3.893 21 H 0.163 0.837 22 C 0.105 3.895 23 N -0.731 5.731 24 C 0.695 3.305 25 O -0.641 6.641 26 N -0.715 5.715 27 C 0.108 3.892 28 H 0.263 0.737 29 H 0.041 0.959 30 H 0.015 0.985 31 H 0.079 0.921 32 H 0.049 0.951 33 H 0.104 0.896 34 H 0.050 0.950 35 H 0.079 0.921 36 H 0.066 0.934 37 H 0.419 0.581 38 H 0.144 0.856 39 H 0.091 0.909 40 H 0.440 0.560 41 H 0.434 0.566 42 H 0.080 0.920 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.409 -12.621 -11.057 20.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.207 4.207 3 Si 0.765 3.235 4 H -0.206 1.206 5 H -0.238 1.238 6 H -0.190 1.190 7 C -0.385 4.385 8 H 0.066 0.934 9 N -0.335 5.335 10 C 0.016 3.984 11 C -0.208 4.208 12 C -0.008 4.008 13 O -0.270 6.270 14 C 0.015 3.985 15 H 0.090 0.910 16 C 0.002 3.998 17 N -0.351 5.351 18 C 0.285 3.715 19 O -0.456 6.456 20 C -0.002 4.002 21 H 0.180 0.820 22 C -0.020 4.020 23 N -0.394 5.394 24 C 0.393 3.607 25 O -0.523 6.523 26 N -0.376 5.376 27 C -0.016 4.016 28 H 0.072 0.928 29 H 0.060 0.940 30 H 0.033 0.967 31 H 0.098 0.902 32 H 0.068 0.932 33 H 0.122 0.878 34 H 0.068 0.932 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.257 0.743 38 H 0.161 0.839 39 H 0.109 0.891 40 H 0.283 0.717 41 H 0.276 0.724 42 H 0.098 0.902 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 13.287 -12.726 -10.156 21.015 hybrid contribution -0.532 1.221 0.348 1.376 sum 12.754 -11.505 -9.808 19.780 Atomic orbital electron populations 1.69980 1.07499 1.27441 1.53447 1.26047 0.95481 1.00779 0.98439 0.85964 0.79364 0.81072 0.77090 1.20600 1.23782 1.18994 1.18605 0.88094 0.93079 1.38719 0.93354 1.44213 1.06819 1.55986 1.26461 1.20732 0.97086 0.93267 0.87353 1.23458 1.00604 0.98734 0.98031 1.22470 0.88409 0.94996 0.94916 1.87615 1.30882 1.88534 1.19981 1.21681 0.95968 0.94940 0.85867 0.90993 1.21437 0.98299 0.86092 0.94010 1.45704 1.39496 1.23229 1.26626 1.21293 0.79145 0.84677 0.86403 1.90762 1.50335 1.76994 1.27499 1.22166 1.00338 0.86776 0.90955 0.81974 1.22660 0.84217 0.96451 0.98633 1.45136 1.22015 1.42691 1.29524 1.16182 0.82198 0.80979 0.81346 1.90955 1.48800 1.42291 1.70237 1.44879 1.17627 1.42568 1.32480 1.21218 0.91823 0.92806 0.95710 0.92779 0.94023 0.96654 0.90236 0.93185 0.87805 0.93154 0.90312 0.91610 0.74310 0.83851 0.89087 0.71695 0.72360 0.90199 0.93282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.03 13.97 21.65 0.30 -55.73 16 2 C -0.01 -0.55 5.27 84.86 0.45 -0.10 16 3 Si 0.94 45.01 25.24 68.60 1.73 46.75 16 4 H -0.28 -12.94 6.74 99.48 0.67 -12.27 16 5 H -0.31 -15.16 7.11 99.48 0.71 -14.45 16 6 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 7 C -0.26 -13.33 9.93 84.03 0.83 -12.50 16 8 H 0.05 2.76 8.06 -2.91 -0.02 2.73 16 9 N -0.61 -26.01 2.16 -706.01 -1.52 -27.54 16 10 C 0.14 5.63 4.30 87.75 0.38 6.01 16 11 C -0.17 -5.24 6.75 32.15 0.22 -5.02 16 12 C 0.07 1.68 6.38 72.73 0.46 2.15 16 13 O -0.35 -8.66 9.54 -137.16 -1.31 -9.96 16 14 C 0.08 1.89 2.10 28.70 0.06 1.95 16 15 H 0.07 1.85 6.77 -2.38 -0.02 1.83 16 16 C 0.13 2.70 5.24 86.38 0.45 3.15 16 17 N -0.70 -10.38 5.43 -463.08 -2.52 -12.89 16 18 C 0.50 8.74 6.94 87.66 0.61 9.35 16 19 O -0.58 -16.45 16.58 -3.02 -0.05 -16.50 16 20 C 0.11 1.06 4.16 44.52 0.19 1.24 16 21 H 0.16 0.21 8.14 -2.39 -0.02 0.19 16 22 C 0.10 0.67 7.72 86.58 0.67 1.34 16 23 N -0.73 -9.69 6.38 -476.61 -3.04 -12.74 16 24 C 0.69 15.49 8.92 179.57 1.60 17.10 16 25 O -0.64 -20.86 18.05 -3.99 -0.07 -20.93 16 26 N -0.71 -12.20 5.62 -460.33 -2.59 -14.79 16 27 C 0.11 3.62 5.58 83.79 0.47 4.09 16 28 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 29 H 0.04 1.55 7.99 -2.39 -0.02 1.53 16 30 H 0.02 0.69 3.44 -2.38 -0.01 0.69 16 31 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 33 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.05 1.33 6.66 -2.39 -0.02 1.31 16 35 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.42 3.70 8.33 -92.71 -0.77 2.93 16 38 H 0.14 -0.26 8.14 -2.39 -0.02 -0.28 16 39 H 0.09 0.64 7.72 -2.39 -0.02 0.62 16 40 H 0.44 4.37 8.96 -92.71 -0.83 3.54 16 41 H 0.43 7.25 8.96 -92.71 -0.83 6.42 16 42 H 0.08 2.67 8.00 -2.38 -0.02 2.65 16 43 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -81.21 345.53 -4.07 -85.29 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -1.40 Total: 10.29 kcal Atomic # 6 Polarization: 22.37 SS G_CDS: 6.38 Total: 28.75 kcal Atomic # 7 Polarization: -114.32 SS G_CDS: -9.36 Total: -123.68 kcal Atomic # 8 Polarization: -45.96 SS G_CDS: -1.43 Total: -47.39 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 1.73 Total: 46.75 kcal Total: -81.21 -4.07 -85.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073752522.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.978 kcal (2) G-P(sol) polarization free energy of solvation -81.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds