Wall clock time and date at job start Fri Apr 10 2020 18:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 120.00423 * 2 1 4 4 H 1.48497 * 109.47197 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.46887 * 299.99909 * 3 2 1 6 6 H 1.48507 * 109.46737 * 59.99651 * 3 2 1 7 7 C 1.38820 * 119.99692 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99766 * 162.99870 * 7 2 1 9 9 N 1.36932 * 119.99692 * 342.71807 * 7 2 1 10 10 C 1.47172 * 121.22876 * 334.36667 * 9 7 2 11 11 C 1.52804 * 108.92846 * 230.91109 * 10 9 7 12 12 O 1.43076 * 109.51920 * 308.65412 * 11 10 9 13 13 C 1.42696 * 113.86627 * 61.52131 * 12 11 10 14 14 H 1.08993 * 108.38801 * 55.26405 * 13 12 11 15 15 C 1.52687 * 109.79656 * 175.29500 * 13 12 11 16 16 C 1.53149 * 110.65157 * 62.26450 * 15 13 12 17 17 N 1.46981 * 108.44814 * 54.01111 * 16 15 13 18 18 C 1.34772 * 120.72572 * 125.48032 * 17 16 15 19 19 O 1.21279 * 120.00291 * 183.17321 * 18 17 16 20 20 C 1.50699 * 119.99985 * 3.17317 * 18 17 16 21 21 C 1.53006 * 115.54689 * 57.69962 * 20 18 17 22 22 F 1.39897 * 109.47137 * 174.17948 * 21 20 18 23 23 C 1.52995 * 117.50426 * 271.99405 * 20 18 17 24 24 C 1.52992 * 60.00014 * 252.50543 * 23 20 18 25 25 C 1.46804 * 118.55517 * 305.46262 * 17 16 15 26 26 C 1.47596 * 121.22038 * 154.65582 * 9 7 2 27 27 H 1.09005 * 110.31562 * 7.68707 * 26 9 7 28 28 H 0.96993 * 119.99900 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.59840 * 350.73340 * 10 9 7 30 30 H 1.09000 * 109.59401 * 111.20175 * 10 9 7 31 31 H 1.09001 * 109.54472 * 188.57899 * 11 10 9 32 32 H 1.08998 * 109.33492 * 68.60700 * 11 10 9 33 33 H 1.09002 * 109.39512 * 301.64552 * 15 13 12 34 34 H 1.09006 * 108.52140 * 182.33373 * 15 13 12 35 35 H 1.08999 * 109.64429 * 294.32100 * 16 15 13 36 36 H 1.09000 * 109.64090 * 173.69692 * 16 15 13 37 37 H 1.08996 * 109.47346 * 294.18661 * 21 20 18 38 38 H 1.09004 * 109.46961 * 54.18457 * 21 20 18 39 39 H 1.09003 * 117.49453 * 0.02562 * 23 20 18 40 40 H 1.09002 * 117.49901 * 145.01277 * 23 20 18 41 41 H 1.08997 * 117.49937 * 252.50434 * 24 23 20 42 42 H 1.09007 * 117.49629 * 107.48809 * 24 23 20 43 43 H 1.09001 * 109.51850 * 294.38978 * 25 17 16 44 44 H 1.09000 * 109.57380 * 174.23700 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 3.0548 -1.2228 -0.2729 9 7 1.3718 -2.3611 0.3534 10 6 0.1958 -2.3455 1.2380 11 6 0.4153 -3.3457 2.3722 12 8 0.7903 -4.6136 1.8256 13 6 2.0094 -4.5851 1.0844 14 1 2.7919 -4.1787 1.7252 15 6 2.3806 -5.9994 0.6449 16 6 1.3084 -6.5749 -0.2849 17 7 1.1013 -5.6338 -1.3947 18 6 1.2085 -6.0436 -2.6742 19 8 1.0919 -5.2443 -3.5788 20 6 1.4732 -7.4951 -2.9808 21 6 0.4475 -8.4848 -2.4243 22 9 0.7393 -9.7708 -2.8913 23 6 2.9328 -7.9496 -3.0421 24 6 2.1152 -7.8268 -4.3293 25 6 0.7748 -4.2377 -1.0793 26 6 1.8416 -3.6725 -0.1346 27 1 2.7912 -3.5632 -0.6586 28 1 -0.4850 0.8400 -0.0004 29 1 0.0640 -1.3464 1.6535 30 1 -0.6915 -2.6283 0.6716 31 1 -0.5054 -3.4550 2.9453 32 1 1.2089 -2.9824 3.0251 33 1 2.4789 -6.6373 1.5233 34 1 3.3339 -5.9592 0.1178 35 1 0.3764 -6.7031 0.2656 36 1 1.6410 -7.5361 -0.6769 37 1 0.4877 -8.4758 -1.3351 38 1 -0.5510 -8.1967 -2.7533 39 1 3.7017 -7.1987 -2.8601 40 1 3.1626 -8.9537 -2.6857 41 1 1.8072 -8.7501 -4.8200 42 1 2.3462 -6.9949 -4.9949 43 1 -0.2010 -4.1923 -0.5957 44 1 0.7538 -3.6511 -1.9977 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074336761.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:50 Heat of formation + Delta-G solvation = -85.394116 kcal Electronic energy + Delta-G solvation = -27982.995907 eV Core-core repulsion = 24043.945615 eV Total energy + Delta-G solvation = -3939.050292 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.71079 -41.73523 -40.33890 -37.57062 -37.20745 -36.45508 -33.52747 -33.07971 -31.22910 -29.62728 -28.79115 -26.74122 -25.64354 -24.52846 -23.53133 -23.40893 -22.72347 -20.47125 -19.67334 -18.92514 -18.41371 -17.48379 -17.18819 -17.07986 -16.92190 -16.53526 -16.35210 -16.28544 -16.02297 -15.57054 -15.31865 -15.00843 -14.84316 -14.38178 -14.23311 -13.97052 -13.84153 -13.50598 -13.10837 -12.97873 -12.90209 -12.71885 -12.56156 -12.47500 -12.39522 -12.23869 -12.07181 -11.88720 -11.69857 -11.49732 -11.23002 -11.03503 -10.87913 -10.77628 -10.52946 -9.76348 -8.74500 -7.95303 -5.41667 1.39347 1.41866 1.43756 1.53957 1.82312 2.44021 2.57630 2.90205 3.19500 3.28392 3.39294 3.43210 3.61935 3.78638 3.83641 3.86256 4.06076 4.10843 4.18637 4.23690 4.26475 4.43494 4.51464 4.55092 4.61792 4.66848 4.69826 4.74052 4.83176 4.85139 4.89061 4.93873 4.97049 5.04369 5.16573 5.22891 5.28516 5.42991 5.54472 5.58692 6.23760 6.34323 6.39285 7.01743 7.06906 7.69237 8.22689 9.09825 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.020111 B = 0.004197 C = 0.003783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.963960 B = 6669.181633 C = 7399.214537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.044 4.044 3 Si 0.968 3.032 4 H -0.267 1.267 5 H -0.295 1.295 6 H -0.284 1.284 7 C -0.266 4.266 8 H 0.066 0.934 9 N -0.602 5.602 10 C 0.143 3.857 11 C 0.052 3.948 12 O -0.382 6.382 13 C 0.086 3.914 14 H 0.053 0.947 15 C -0.115 4.115 16 C 0.103 3.897 17 N -0.596 5.596 18 C 0.545 3.455 19 O -0.589 6.589 20 C -0.207 4.207 21 C 0.104 3.896 22 F -0.210 7.210 23 C -0.125 4.125 24 C -0.144 4.144 25 C 0.125 3.875 26 C 0.131 3.869 27 H 0.059 0.941 28 H 0.252 0.748 29 H 0.067 0.933 30 H 0.001 0.999 31 H 0.109 0.891 32 H 0.045 0.955 33 H 0.116 0.884 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.122 0.878 37 H 0.116 0.884 38 H 0.082 0.918 39 H 0.099 0.901 40 H 0.137 0.863 41 H 0.123 0.877 42 H 0.086 0.914 43 H 0.053 0.947 44 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.257 -20.303 2.230 20.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.240 4.240 3 Si 0.796 3.204 4 H -0.192 1.192 5 H -0.222 1.222 6 H -0.210 1.210 7 C -0.396 4.396 8 H 0.084 0.916 9 N -0.326 5.326 10 C 0.018 3.982 11 C -0.025 4.025 12 O -0.301 6.301 13 C 0.027 3.973 14 H 0.071 0.929 15 C -0.153 4.153 16 C -0.018 4.018 17 N -0.328 5.328 18 C 0.334 3.666 19 O -0.470 6.470 20 C -0.211 4.211 21 C 0.049 3.951 22 F -0.191 7.191 23 C -0.162 4.162 24 C -0.181 4.181 25 C 0.000 4.000 26 C 0.024 3.976 27 H 0.077 0.923 28 H 0.061 0.939 29 H 0.085 0.915 30 H 0.019 0.981 31 H 0.127 0.873 32 H 0.064 0.936 33 H 0.134 0.866 34 H 0.107 0.893 35 H 0.102 0.898 36 H 0.140 0.860 37 H 0.133 0.867 38 H 0.100 0.900 39 H 0.118 0.882 40 H 0.155 0.845 41 H 0.142 0.858 42 H 0.105 0.895 43 H 0.071 0.929 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 3.996 -19.909 1.803 20.386 hybrid contribution -0.010 2.198 -0.514 2.258 sum 3.986 -17.711 1.289 18.199 Atomic orbital electron populations 1.70177 1.06585 1.26004 1.54864 1.25757 0.96062 1.01400 1.00821 0.85208 0.78596 0.79748 0.76888 1.19165 1.22228 1.21040 1.19487 0.92837 0.85699 1.41590 0.91649 1.44518 1.33557 1.01218 1.53271 1.21234 0.87801 0.98692 0.90496 1.23072 1.00445 0.83949 0.95066 1.87751 1.41615 1.30668 1.70044 1.22376 0.86744 0.96612 0.91566 0.92928 1.21863 0.99062 0.93444 1.00957 1.22205 1.00320 0.92530 0.86714 1.48247 1.68180 1.10303 1.06053 1.19923 0.75538 0.89215 0.81930 1.90694 1.52660 1.56805 1.46820 1.21989 0.99963 0.91720 1.07394 1.21590 0.96994 0.75790 1.00723 1.92759 1.95011 1.40314 1.91004 1.23212 0.89145 1.04228 0.99592 1.23053 1.01441 1.03660 0.89993 1.21755 0.99022 0.80979 0.98235 1.21744 0.95588 0.86427 0.93878 0.92255 0.93898 0.91459 0.98082 0.87295 0.93634 0.86620 0.89260 0.89784 0.85984 0.86683 0.90000 0.88224 0.84477 0.85838 0.89543 0.92865 0.94005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.84 11.12 21.65 0.24 -54.60 16 2 C -0.04 -2.48 4.95 84.86 0.42 -2.06 16 3 Si 0.97 45.01 29.59 68.60 2.03 47.04 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 6 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 7 C -0.27 -14.71 9.70 84.04 0.81 -13.89 16 8 H 0.07 3.57 7.89 -2.91 -0.02 3.55 16 9 N -0.60 -29.94 2.71 -673.16 -1.82 -31.76 16 10 C 0.14 6.75 4.94 86.19 0.43 7.17 16 11 C 0.05 1.89 6.96 71.92 0.50 2.39 16 12 O -0.38 -12.71 9.71 -148.98 -1.45 -14.15 16 13 C 0.09 2.74 2.82 30.56 0.09 2.83 16 14 H 0.05 1.73 8.11 -2.39 -0.02 1.71 16 15 C -0.12 -2.41 5.75 30.54 0.18 -2.24 16 16 C 0.10 2.12 5.13 86.34 0.44 2.56 16 17 N -0.60 -18.39 2.96 -818.95 -2.43 -20.82 16 18 C 0.55 17.57 7.06 87.66 0.62 18.19 16 19 O -0.59 -25.53 15.93 -3.03 -0.05 -25.57 16 20 C -0.21 -4.47 1.44 -52.93 -0.08 -4.54 16 21 C 0.10 1.70 7.13 71.98 0.51 2.21 16 22 F -0.21 -3.60 15.94 44.97 0.72 -2.88 16 23 C -0.12 -2.05 9.46 30.59 0.29 -1.76 16 24 C -0.14 -2.98 9.46 30.59 0.29 -2.69 16 25 C 0.13 5.18 5.67 86.42 0.49 5.67 16 26 C 0.13 5.41 2.96 44.95 0.13 5.54 16 27 H 0.06 2.56 7.99 -2.38 -0.02 2.54 16 28 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 29 H 0.07 3.56 6.10 -2.38 -0.01 3.54 16 30 H 0.00 0.06 7.21 -2.39 -0.02 0.04 16 31 H 0.11 3.32 8.14 -2.39 -0.02 3.30 16 32 H 0.05 1.61 8.13 -2.39 -0.02 1.59 16 33 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 35 H 0.08 1.70 8.00 -2.39 -0.02 1.68 16 36 H 0.12 1.65 4.49 -2.39 -0.01 1.64 16 37 H 0.12 1.33 5.42 -2.39 -0.01 1.32 16 38 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.14 1.52 7.95 -2.39 -0.02 1.50 16 41 H 0.12 2.12 7.61 -2.39 -0.02 2.10 16 42 H 0.09 2.18 7.86 -2.38 -0.02 2.16 16 43 H 0.05 2.36 6.69 -2.39 -0.02 2.34 16 44 H 0.04 2.11 7.00 -2.39 -0.02 2.09 16 Total: -1.00 -72.17 342.18 3.38 -68.80 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: 1.01 Total: 14.56 kcal Atomic # 6 Polarization: 14.26 SS G_CDS: 5.12 Total: 19.39 kcal Atomic # 7 Polarization: -103.18 SS G_CDS: -4.01 Total: -107.19 kcal Atomic # 8 Polarization: -38.23 SS G_CDS: -1.49 Total: -39.73 kcal Atomic # 9 Polarization: -3.60 SS G_CDS: 0.72 Total: -2.88 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -72.17 3.38 -68.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074336761.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.598 kcal (2) G-P(sol) polarization free energy of solvation -72.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds