Wall clock time and date at job start Fri Apr 10 2020 18:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86798 * 120.00016 * 2 1 4 4 H 1.48503 * 109.46876 * 264.98621 * 3 2 1 5 5 H 1.48502 * 109.46930 * 24.98404 * 3 2 1 6 6 H 1.48497 * 109.47150 * 144.98635 * 3 2 1 7 7 C 1.38813 * 119.99722 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99698 * 188.43277 * 7 2 1 9 9 N 1.36935 * 120.00423 * 8.43873 * 7 2 1 10 10 C 1.47360 * 121.30287 * 33.55767 * 9 7 2 11 11 C 1.53198 * 108.79508 * 129.73917 * 10 9 7 12 12 O 1.43143 * 109.73900 * 51.21416 * 11 10 9 13 13 C 1.42599 * 113.63505 * 298.30393 * 12 11 10 14 14 H 1.08998 * 108.96597 * 304.15831 * 13 12 11 15 15 C 1.52791 * 111.11354 * 183.61014 * 13 12 11 16 16 C 1.53368 * 108.81899 * 177.48005 * 15 13 12 17 17 N 1.46835 * 109.24881 * 53.83341 * 16 15 13 18 18 C 1.34775 * 120.40976 * 127.47363 * 17 16 15 19 19 O 1.21279 * 120.00296 * 172.57614 * 18 17 16 20 20 C 1.50703 * 120.00003 * 352.58265 * 18 17 16 21 21 C 1.52996 * 115.55485 * 68.49792 * 20 18 17 22 22 F 1.39898 * 109.47183 * 174.48097 * 21 20 18 23 23 C 1.53005 * 117.49513 * 282.79299 * 20 18 17 24 24 C 1.53007 * 60.00133 * 252.51176 * 23 20 18 25 25 C 1.47133 * 119.18103 * 307.74776 * 17 16 15 26 26 C 1.46874 * 121.30785 * 213.54219 * 9 7 2 27 27 H 1.08993 * 110.20390 * 112.04985 * 26 9 7 28 28 H 0.96998 * 119.99784 * 0.02562 * 1 2 3 29 29 H 1.08991 * 109.58460 * 249.53232 * 10 9 7 30 30 H 1.08998 * 109.58001 * 9.94700 * 10 9 7 31 31 H 1.08996 * 109.42136 * 171.29765 * 11 10 9 32 32 H 1.09000 * 109.42680 * 291.18447 * 11 10 9 33 33 H 1.08998 * 109.57348 * 57.68170 * 15 13 12 34 34 H 1.08994 * 109.57964 * 297.28465 * 15 13 12 35 35 H 1.09006 * 109.50327 * 293.90192 * 16 15 13 36 36 H 1.08996 * 109.54182 * 173.79376 * 16 15 13 37 37 H 1.09000 * 109.47023 * 294.48552 * 21 20 18 38 38 H 1.09007 * 109.46714 * 54.48095 * 21 20 18 39 39 H 1.09000 * 117.49754 * 359.97438 * 23 20 18 40 40 H 1.08999 * 117.49927 * 145.01952 * 23 20 18 41 41 H 1.08999 * 117.49341 * 252.51533 * 24 23 20 42 42 H 1.09000 * 117.49825 * 107.48624 * 24 23 20 43 43 H 1.09000 * 109.73006 * 172.89887 * 25 17 16 44 44 H 1.08998 * 109.72945 * 293.57042 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.6037 1.9852 -1.3948 5 1 1.3987 2.6809 0.5914 6 1 3.4908 1.4731 0.8033 7 6 2.0103 -1.2022 0.0005 8 1 3.0815 -1.2072 0.1377 9 7 1.3367 -2.3818 -0.1730 10 6 0.1449 -2.4631 -1.0357 11 6 0.3170 -3.6361 -2.0060 12 8 0.6662 -4.8182 -1.2783 13 6 1.9008 -4.7114 -0.5727 14 1 2.6886 -4.4416 -1.2760 15 6 2.2609 -6.0305 0.1092 16 6 3.6230 -5.8761 0.7970 17 7 3.5860 -4.7096 1.6879 18 6 3.9518 -4.8260 2.9799 19 8 4.0481 -3.8365 3.6744 20 6 4.2413 -6.1859 3.5614 21 6 5.4988 -6.8767 3.0303 22 9 5.7143 -8.0629 3.7399 23 6 3.0452 -7.0712 3.9172 24 6 3.8723 -6.4202 5.0277 25 6 3.1388 -3.4134 1.1545 26 6 1.7741 -3.6155 0.4932 27 1 1.0440 -3.9170 1.2442 28 1 -0.4850 0.8400 -0.0004 29 1 -0.7407 -2.6244 -0.4211 30 1 0.0375 -1.5360 -1.5987 31 1 -0.6171 -3.8030 -2.5422 32 1 1.1078 -3.4035 -2.7192 33 1 2.3159 -6.8238 -0.6363 34 1 1.5023 -6.2766 0.8521 35 1 4.3974 -5.7340 0.0430 36 1 3.8413 -6.7717 1.3786 37 1 5.3688 -7.1047 1.9723 38 1 6.3570 -6.2165 3.1569 39 1 2.0490 -6.6699 3.7311 40 1 3.1540 -8.1461 3.7728 41 1 4.5253 -7.0669 5.6138 42 1 3.4203 -5.5908 5.5717 43 1 3.0509 -2.6918 1.9667 44 1 3.8553 -3.0522 0.4167 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074336764.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:10 Heat of formation + Delta-G solvation = -68.357177 kcal Electronic energy + Delta-G solvation = -27891.144638 eV Core-core repulsion = 23952.833122 eV Total energy + Delta-G solvation = -3938.311515 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.164 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -47.97830 -40.47469 -38.84735 -36.63361 -36.08268 -34.70547 -31.82519 -31.44451 -30.03989 -28.43891 -27.05907 -25.53510 -23.99875 -22.94020 -22.66681 -21.93122 -20.82856 -19.72053 -18.77563 -17.45316 -16.87776 -16.31599 -16.20361 -15.87175 -15.42307 -15.37172 -15.07036 -14.98087 -14.40144 -14.13889 -13.89399 -13.65335 -13.33503 -13.10129 -12.90721 -12.71022 -12.67509 -12.07471 -11.99842 -11.72323 -11.65505 -11.38027 -11.04863 -10.98128 -10.86879 -10.67206 -10.63931 -10.32582 -10.25313 -10.22300 -10.09296 -9.67709 -9.61878 -9.01489 -8.58691 -8.42741 -6.68968 -5.88202 -3.41318 2.56538 2.94907 3.32890 3.40065 3.41113 3.42627 4.13093 4.23171 4.32665 4.38723 4.51497 4.55484 4.63720 4.83836 4.97220 5.11607 5.27482 5.31731 5.35250 5.44249 5.46341 5.50169 5.53531 5.65975 5.70423 5.75090 5.85608 5.89102 5.96943 6.06761 6.10397 6.21162 6.28924 6.42335 6.59147 6.65222 6.83202 7.08069 7.47000 7.51226 7.68625 7.85150 8.24832 8.32984 9.06922 9.67694 10.28748 11.19622 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.016600 B = 0.004566 C = 0.003872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.311074 B = 6131.090632 C = 7229.784204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.014 3.986 3 Si 0.904 3.096 4 H -0.285 1.285 5 H -0.289 1.289 6 H -0.277 1.277 7 C -0.263 4.263 8 H 0.069 0.931 9 N -0.586 5.586 10 C 0.145 3.855 11 C 0.039 3.961 12 O -0.389 6.389 13 C 0.077 3.923 14 H 0.052 0.948 15 C -0.124 4.124 16 C 0.106 3.894 17 N -0.605 5.605 18 C 0.553 3.447 19 O -0.527 6.527 20 C -0.202 4.202 21 C 0.101 3.899 22 F -0.209 7.209 23 C -0.150 4.150 24 C -0.135 4.135 25 C 0.125 3.875 26 C 0.138 3.862 27 H 0.036 0.964 28 H 0.256 0.744 29 H 0.029 0.971 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.040 0.960 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.104 0.896 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.102 0.898 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.291 -15.657 1.514 17.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.186 4.186 3 Si 0.734 3.266 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.202 1.202 7 C -0.392 4.392 8 H 0.086 0.914 9 N -0.311 5.311 10 C 0.020 3.980 11 C -0.039 4.039 12 O -0.309 6.309 13 C 0.017 3.983 14 H 0.070 0.930 15 C -0.162 4.162 16 C -0.017 4.017 17 N -0.338 5.338 18 C 0.339 3.661 19 O -0.402 6.402 20 C -0.206 4.206 21 C 0.047 3.953 22 F -0.190 7.190 23 C -0.187 4.187 24 C -0.173 4.173 25 C 0.004 3.996 26 C 0.030 3.970 27 H 0.053 0.947 28 H 0.066 0.934 29 H 0.047 0.953 30 H 0.109 0.891 31 H 0.099 0.901 32 H 0.059 0.941 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.108 0.892 37 H 0.106 0.894 38 H 0.103 0.897 39 H 0.122 0.878 40 H 0.126 0.874 41 H 0.126 0.874 42 H 0.125 0.875 43 H 0.120 0.880 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.123 -15.111 1.907 16.814 hybrid contribution 0.390 1.145 -0.145 1.218 sum 7.512 -13.966 1.762 15.956 Atomic orbital electron populations 1.69965 1.05367 1.25829 1.53133 1.25261 0.95418 0.98532 0.99439 0.86284 0.79206 0.83292 0.77850 1.21209 1.21500 1.20198 1.19059 0.90521 0.83146 1.46514 0.91384 1.43933 1.32002 1.04201 1.50960 1.21401 0.88993 0.96019 0.91628 1.23345 0.99022 0.86963 0.94576 1.87736 1.39565 1.37513 1.66045 1.22440 0.86794 0.94948 0.94145 0.93034 1.21840 0.96708 0.97595 1.00088 1.21883 0.97647 0.88703 0.93482 1.48219 1.65132 1.11269 1.09202 1.19166 0.76996 0.88507 0.81442 1.90729 1.51486 1.38454 1.59539 1.22077 0.99243 0.96736 1.02514 1.21488 0.96192 0.82380 0.95286 1.92761 1.95861 1.49287 1.81127 1.23115 0.94814 0.98757 1.02057 1.23022 1.02116 1.02897 0.89224 1.21796 0.95363 0.82898 0.99564 1.21294 0.94024 0.88833 0.92849 0.94664 0.93375 0.95296 0.89099 0.90079 0.94149 0.90211 0.90759 0.91052 0.89187 0.89381 0.89735 0.87802 0.87394 0.87438 0.87486 0.87990 0.90870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.56 11.21 55.49 0.62 -24.93 16 2 C 0.01 0.37 5.11 -17.43 -0.09 0.28 16 3 Si 0.90 21.38 29.56 -169.99 -5.03 16.35 16 4 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.26 -6.93 8.73 -15.06 -0.13 -7.06 16 8 H 0.07 1.75 6.40 -52.49 -0.34 1.41 16 9 N -0.59 -14.30 3.02 -164.35 -0.50 -14.80 16 10 C 0.15 3.40 5.35 -3.47 -0.02 3.38 16 11 C 0.04 0.74 6.95 37.26 0.26 1.00 16 12 O -0.39 -7.46 10.49 -35.23 -0.37 -7.83 16 13 C 0.08 1.34 2.48 -26.63 -0.07 1.27 16 14 H 0.05 0.91 8.13 -51.93 -0.42 0.49 16 15 C -0.12 -1.61 5.82 -26.65 -0.16 -1.76 16 16 C 0.11 1.20 5.67 -3.67 -0.02 1.18 16 17 N -0.60 -9.16 2.98 -172.69 -0.51 -9.68 16 18 C 0.55 8.65 6.94 -10.98 -0.08 8.58 16 19 O -0.53 -10.52 16.22 5.56 0.09 -10.43 16 20 C -0.20 -2.33 1.36 -155.65 -0.21 -2.55 16 21 C 0.10 0.94 7.22 37.16 0.27 1.21 16 22 F -0.21 -2.12 15.94 2.25 0.04 -2.08 16 23 C -0.15 -1.51 9.34 -26.73 -0.25 -1.76 16 24 C -0.14 -1.49 9.48 -26.72 -0.25 -1.74 16 25 C 0.13 2.39 4.53 -3.70 -0.02 2.37 16 26 C 0.14 2.86 3.03 -67.52 -0.20 2.65 16 27 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.09 2.31 6.48 -51.93 -0.34 1.98 16 31 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.09 0.79 4.23 -51.93 -0.22 0.58 16 37 H 0.09 0.64 5.78 -51.93 -0.30 0.34 16 38 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.11 0.90 7.95 -51.93 -0.41 0.49 16 41 H 0.11 1.03 7.62 -51.93 -0.40 0.64 16 42 H 0.11 1.31 8.05 -51.93 -0.42 0.90 16 43 H 0.10 2.29 6.88 -51.93 -0.36 1.93 16 44 H 0.07 1.40 7.34 -51.93 -0.38 1.02 16 LS Contribution 343.21 15.07 5.17 5.17 Total: -1.00 -31.26 343.21 -7.97 -39.23 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -6.52 Total: 1.95 kcal Atomic # 6 Polarization: 8.02 SS G_CDS: -0.97 Total: 7.05 kcal Atomic # 7 Polarization: -49.02 SS G_CDS: -0.39 Total: -49.41 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: -0.28 Total: -18.27 kcal Atomic # 9 Polarization: -2.12 SS G_CDS: 0.04 Total: -2.08 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.35 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.26 -7.97 -39.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074336764.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.125 kcal (2) G-P(sol) polarization free energy of solvation -31.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds