Wall clock time and date at job start Fri Apr 10 2020 18:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99981 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 119.99884 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99443 * 3 2 1 7 7 C 1.38812 * 119.99535 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99468 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00429 * 0.02562 * 7 2 1 10 10 C 1.47017 * 125.65325 * 179.97438 * 9 7 2 11 11 C 1.54318 * 107.27582 * 181.02179 * 10 9 7 12 12 H 1.09003 * 110.72167 * 140.55598 * 11 10 9 13 13 N 1.46500 * 110.72583 * 263.65456 * 11 10 9 14 14 C 1.34778 * 120.00113 * 273.54695 * 13 11 10 15 15 O 1.21282 * 120.00029 * 359.97438 * 14 13 11 16 16 C 1.50695 * 119.99880 * 179.97438 * 14 13 11 17 17 N 1.46503 * 109.47000 * 180.02562 * 16 14 13 18 18 C 1.46385 * 119.32692 * 269.72747 * 17 16 14 19 19 C 1.53501 * 109.01340 * 150.82785 * 18 17 16 20 20 C 1.53238 * 108.43164 * 55.78830 * 19 18 17 21 21 N 1.46380 * 109.15281 * 304.38329 * 20 19 18 22 22 C 1.34131 * 119.33281 * 90.00163 * 17 16 14 23 23 O 1.21590 * 118.69711 * 0.52876 * 22 17 16 24 24 C 1.55158 * 102.94344 * 22.19712 * 11 10 9 25 25 H 1.08998 * 111.00609 * 82.60713 * 24 11 10 26 26 O 1.42901 * 111.00513 * 206.42552 * 24 11 10 27 27 C 1.47434 * 125.64526 * 359.68990 * 9 7 2 28 28 H 0.97005 * 119.99717 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.88360 * 300.44772 * 10 9 7 30 30 H 1.09008 * 109.87914 * 61.45235 * 10 9 7 31 31 H 0.97003 * 120.00280 * 93.54130 * 13 11 10 32 32 H 1.09005 * 109.47593 * 299.99820 * 16 14 13 33 33 H 1.08995 * 109.47535 * 60.00223 * 16 14 13 34 34 H 1.09001 * 109.52250 * 270.86492 * 18 17 16 35 35 H 1.09004 * 109.52448 * 31.05933 * 18 17 16 36 36 H 1.09010 * 109.79621 * 296.04295 * 19 18 17 37 37 H 1.08998 * 109.72773 * 175.49947 * 19 18 17 38 38 H 1.08997 * 109.52532 * 184.48139 * 20 19 18 39 39 H 1.08998 * 109.57743 * 64.32019 * 20 19 18 40 40 H 0.97009 * 119.33207 * 209.07890 * 21 20 19 41 41 H 0.96704 * 113.99477 * 179.97438 * 26 24 11 42 42 H 1.08990 * 110.36592 * 274.74448 * 27 9 7 43 43 H 1.08998 * 110.36718 * 37.06988 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7464 -0.0006 5 1 3.1039 1.6964 1.2124 6 1 3.1041 1.6962 -1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 1.9316 -3.7275 0.0005 11 6 0.7782 -4.7524 -0.0257 12 1 1.0234 -5.5923 -0.6758 13 7 0.4692 -5.2199 1.3278 14 6 1.1501 -6.2571 1.8544 15 8 2.0183 -6.8036 1.2076 16 6 0.8325 -6.7376 3.2470 17 7 1.7038 -7.8659 3.5847 18 6 1.2637 -9.2282 3.2791 19 6 2.4963 -10.1060 3.0214 20 6 3.4182 -10.0169 4.2422 21 7 3.7391 -8.6122 4.5003 22 6 2.8861 -7.6301 4.1727 23 8 3.1971 -6.4806 4.4182 24 6 -0.4021 -3.9324 -0.6103 25 1 -0.3535 -3.8988 -1.6986 26 8 -1.6570 -4.4572 -0.1723 27 6 -0.1416 -2.5331 0.0065 28 1 -0.4850 0.8401 -0.0004 29 1 2.5577 -3.8511 -0.8831 30 1 2.5308 -3.8632 0.9010 31 1 -0.2254 -4.7831 1.8451 32 1 0.9965 -5.9272 3.9573 33 1 -0.2089 -7.0559 3.2929 34 1 0.6987 -9.6262 4.1220 35 1 0.6334 -9.2165 2.3898 36 1 3.0247 -9.7500 2.1369 37 1 2.1866 -11.1402 2.8712 38 1 4.3367 -10.5703 4.0463 39 1 2.9156 -10.4414 5.1112 40 1 4.5859 -8.3869 4.9165 41 1 -2.4244 -3.9767 -0.5119 42 1 -0.5230 -2.4888 1.0265 43 1 -0.6020 -1.7575 -0.6056 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083601473.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:40 Heat of formation + Delta-G solvation = -67.931926 kcal Electronic energy + Delta-G solvation = -27016.344454 eV Core-core repulsion = 23097.971340 eV Total energy + Delta-G solvation = -3918.373113 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.163 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.81166 -39.36066 -37.67993 -36.47532 -35.09682 -34.85931 -33.67041 -31.69548 -31.14701 -28.98161 -27.83875 -26.85235 -25.57503 -24.36674 -23.19220 -20.91828 -20.41076 -19.67316 -19.08996 -17.70995 -17.41171 -17.20004 -16.94182 -16.59951 -15.73189 -15.58567 -14.97750 -14.84292 -14.41422 -14.29151 -14.08554 -13.90453 -13.85993 -13.29666 -13.04389 -12.73511 -12.63240 -12.30869 -12.22374 -11.71776 -11.61198 -11.51772 -11.28991 -11.08007 -10.90974 -10.82267 -10.19591 -10.10488 -10.04848 -9.84946 -9.73132 -9.21298 -9.18800 -8.72189 -8.62187 -8.51888 -6.87876 -5.69009 -3.10408 2.51065 2.97532 3.16977 3.41577 3.45212 3.47039 3.56678 3.76615 4.39550 4.42504 4.54687 4.61600 4.80223 4.95268 5.09603 5.10545 5.18749 5.28890 5.34799 5.41940 5.42121 5.48749 5.57225 5.74124 5.83500 5.87818 6.13981 6.18095 6.27316 6.44598 6.55639 6.72869 6.97743 7.06044 7.30477 7.56977 7.73659 7.73800 7.95077 8.05933 8.28922 8.55987 8.63038 9.18171 9.78459 10.41362 11.35218 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.020146 B = 0.003405 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.537387 B = 8220.958889 C = 9102.257291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.012 4.012 3 Si 0.918 3.082 4 H -0.290 1.290 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.220 4.220 8 H 0.079 0.921 9 N -0.600 5.600 10 C 0.126 3.874 11 C 0.147 3.853 12 H 0.088 0.912 13 N -0.697 5.697 14 C 0.497 3.503 15 O -0.543 6.543 16 C 0.113 3.887 17 N -0.604 5.604 18 C 0.117 3.883 19 C -0.153 4.153 20 C 0.112 3.888 21 N -0.739 5.739 22 C 0.715 3.285 23 O -0.591 6.591 24 C 0.064 3.936 25 H 0.070 0.930 26 O -0.566 6.566 27 C 0.128 3.872 28 H 0.253 0.747 29 H 0.034 0.966 30 H 0.034 0.966 31 H 0.405 0.595 32 H 0.116 0.884 33 H 0.106 0.894 34 H 0.065 0.935 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.094 0.906 38 H 0.081 0.919 39 H 0.062 0.938 40 H 0.414 0.586 41 H 0.378 0.622 42 H 0.021 0.979 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.266 -21.477 6.303 22.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.207 4.207 3 Si 0.748 3.252 4 H -0.216 1.216 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.348 4.348 8 H 0.097 0.903 9 N -0.327 5.327 10 C -0.001 4.001 11 C 0.041 3.959 12 H 0.106 0.894 13 N -0.349 5.349 14 C 0.281 3.719 15 O -0.420 6.420 16 C -0.015 4.015 17 N -0.341 5.341 18 C -0.006 4.006 19 C -0.192 4.192 20 C -0.013 4.013 21 N -0.397 5.397 22 C 0.416 3.584 23 O -0.469 6.469 24 C 0.003 3.997 25 H 0.088 0.912 26 O -0.371 6.371 27 C 0.003 3.997 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.240 0.760 32 H 0.134 0.866 33 H 0.124 0.876 34 H 0.083 0.917 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.112 0.888 38 H 0.099 0.901 39 H 0.081 0.919 40 H 0.251 0.749 41 H 0.225 0.775 42 H 0.039 0.961 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -1.300 -21.517 6.189 22.427 hybrid contribution 0.160 1.422 0.048 1.432 sum -1.140 -20.095 6.236 21.071 Atomic orbital electron populations 1.69730 1.04892 1.24936 1.57949 1.24772 0.95783 0.97755 1.02355 0.86098 0.78385 0.82741 0.77990 1.21562 1.21141 1.21120 1.19079 0.90621 0.82256 1.42856 0.90342 1.44326 1.01447 0.99885 1.87061 1.21751 0.93809 0.85424 0.99140 1.21935 0.94736 0.96069 0.83116 0.89438 1.45644 1.39212 1.33182 1.16828 1.21053 0.81852 0.80167 0.88795 1.90653 1.31754 1.57556 1.62069 1.21181 0.94378 0.90956 0.94960 1.46285 1.18416 1.06511 1.62896 1.21598 0.96746 0.81135 1.01121 1.22232 0.96809 1.01028 0.99120 1.21497 0.99915 0.82534 0.97366 1.44884 1.21744 1.05577 1.67480 1.15350 0.80334 0.84562 0.78157 1.90995 1.75638 1.19493 1.60747 1.23747 0.82288 0.96143 0.97489 0.91182 1.86321 1.15597 1.58937 1.76253 1.22603 0.85621 0.92480 0.99045 0.93671 0.94824 0.94843 0.76028 0.86574 0.87564 0.91653 0.89958 0.89795 0.88773 0.90089 0.91937 0.74917 0.77491 0.96116 0.87153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.52 10.08 55.49 0.56 -25.96 16 2 C -0.01 -0.33 5.49 -17.43 -0.10 -0.42 16 3 Si 0.92 22.34 29.55 -169.99 -5.02 17.32 16 4 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 7 C -0.22 -6.25 10.27 -15.06 -0.15 -6.40 16 8 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 9 N -0.60 -15.55 3.39 -169.94 -0.58 -16.13 16 10 C 0.13 2.87 6.98 -3.07 -0.02 2.85 16 11 C 0.15 2.83 3.13 -66.10 -0.21 2.62 16 12 H 0.09 1.66 7.69 -51.93 -0.40 1.26 16 13 N -0.70 -12.09 4.79 -52.03 -0.25 -12.34 16 14 C 0.50 8.52 7.89 -10.99 -0.09 8.44 16 15 O -0.54 -11.06 16.16 5.56 0.09 -10.97 16 16 C 0.11 1.50 5.80 -5.19 -0.03 1.47 16 17 N -0.60 -7.87 2.30 -180.99 -0.42 -8.28 16 18 C 0.12 1.03 6.50 -3.84 -0.03 1.01 16 19 C -0.15 -1.14 6.21 -26.35 -0.16 -1.30 16 20 C 0.11 0.77 7.20 -3.98 -0.03 0.74 16 21 N -0.74 -8.11 5.58 -65.53 -0.37 -8.48 16 22 C 0.71 10.93 8.17 -88.06 -0.72 10.21 16 23 O -0.59 -11.80 16.49 5.29 0.09 -11.72 16 24 C 0.06 1.18 4.23 -24.47 -0.10 1.07 16 25 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 26 O -0.57 -8.81 12.64 -35.23 -0.45 -9.26 16 27 C 0.13 2.99 5.62 -2.41 -0.01 2.97 16 28 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.03 0.83 8.05 -51.92 -0.42 0.42 16 31 H 0.40 6.57 8.21 -40.82 -0.34 6.23 16 32 H 0.12 1.66 7.29 -51.93 -0.38 1.28 16 33 H 0.11 0.99 8.05 -51.93 -0.42 0.57 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.08 0.72 8.06 -51.93 -0.42 0.30 16 36 H 0.08 0.85 8.14 -51.92 -0.42 0.43 16 37 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.41 4.07 8.88 -40.82 -0.36 3.71 16 41 H 0.38 4.48 9.12 45.56 0.42 4.90 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.11 2.86 5.86 -51.93 -0.30 2.56 16 LS Contribution 352.31 15.07 5.31 5.31 Total: -1.00 -37.36 352.31 -8.23 -45.59 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: -5.55 Total: 11.68 kcal Atomic # 6 Polarization: 24.90 SS G_CDS: -1.65 Total: 23.25 kcal Atomic # 7 Polarization: -70.15 SS G_CDS: -1.05 Total: -71.20 kcal Atomic # 8 Polarization: -31.68 SS G_CDS: -0.27 Total: -31.94 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -37.36 -8.23 -45.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083601473.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.341 kcal (2) G-P(sol) polarization free energy of solvation -37.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds