Wall clock time and date at job start Fri Apr 10 2020 18:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99981 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 119.99884 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99443 * 3 2 1 7 7 C 1.38812 * 119.99535 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99468 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00429 * 0.02562 * 7 2 1 10 10 C 1.47017 * 125.65325 * 179.97438 * 9 7 2 11 11 C 1.54318 * 107.27582 * 181.02179 * 10 9 7 12 12 H 1.09003 * 110.72167 * 140.55598 * 11 10 9 13 13 N 1.46500 * 110.72583 * 263.65456 * 11 10 9 14 14 C 1.34778 * 120.00113 * 273.54695 * 13 11 10 15 15 O 1.21282 * 120.00029 * 359.97438 * 14 13 11 16 16 C 1.50695 * 119.99880 * 179.97438 * 14 13 11 17 17 N 1.46503 * 109.47000 * 180.02562 * 16 14 13 18 18 C 1.46385 * 119.32692 * 269.72747 * 17 16 14 19 19 C 1.53501 * 109.01340 * 150.82785 * 18 17 16 20 20 C 1.53238 * 108.43164 * 55.78830 * 19 18 17 21 21 N 1.46380 * 109.15281 * 304.38329 * 20 19 18 22 22 C 1.34131 * 119.33281 * 90.00163 * 17 16 14 23 23 O 1.21590 * 118.69711 * 0.52876 * 22 17 16 24 24 C 1.55158 * 102.94344 * 22.19712 * 11 10 9 25 25 H 1.08998 * 111.00609 * 82.60713 * 24 11 10 26 26 O 1.42901 * 111.00513 * 206.42552 * 24 11 10 27 27 C 1.47434 * 125.64526 * 359.68990 * 9 7 2 28 28 H 0.97005 * 119.99717 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.88360 * 300.44772 * 10 9 7 30 30 H 1.09008 * 109.87914 * 61.45235 * 10 9 7 31 31 H 0.97003 * 120.00280 * 93.54130 * 13 11 10 32 32 H 1.09005 * 109.47593 * 299.99820 * 16 14 13 33 33 H 1.08995 * 109.47535 * 60.00223 * 16 14 13 34 34 H 1.09001 * 109.52250 * 270.86492 * 18 17 16 35 35 H 1.09004 * 109.52448 * 31.05933 * 18 17 16 36 36 H 1.09010 * 109.79621 * 296.04295 * 19 18 17 37 37 H 1.08998 * 109.72773 * 175.49947 * 19 18 17 38 38 H 1.08997 * 109.52532 * 184.48139 * 20 19 18 39 39 H 1.08998 * 109.57743 * 64.32019 * 20 19 18 40 40 H 0.97009 * 119.33207 * 209.07890 * 21 20 19 41 41 H 0.96704 * 113.99477 * 179.97438 * 26 24 11 42 42 H 1.08990 * 110.36592 * 274.74448 * 27 9 7 43 43 H 1.08998 * 110.36718 * 37.06988 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7464 -0.0006 5 1 3.1039 1.6964 1.2124 6 1 3.1041 1.6962 -1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 1.9316 -3.7275 0.0005 11 6 0.7782 -4.7524 -0.0257 12 1 1.0234 -5.5923 -0.6758 13 7 0.4692 -5.2199 1.3278 14 6 1.1501 -6.2571 1.8544 15 8 2.0183 -6.8036 1.2076 16 6 0.8325 -6.7376 3.2470 17 7 1.7038 -7.8659 3.5847 18 6 1.2637 -9.2282 3.2791 19 6 2.4963 -10.1060 3.0214 20 6 3.4182 -10.0169 4.2422 21 7 3.7391 -8.6122 4.5003 22 6 2.8861 -7.6301 4.1727 23 8 3.1971 -6.4806 4.4182 24 6 -0.4021 -3.9324 -0.6103 25 1 -0.3535 -3.8988 -1.6986 26 8 -1.6570 -4.4572 -0.1723 27 6 -0.1416 -2.5331 0.0065 28 1 -0.4850 0.8401 -0.0004 29 1 2.5577 -3.8511 -0.8831 30 1 2.5308 -3.8632 0.9010 31 1 -0.2254 -4.7831 1.8451 32 1 0.9965 -5.9272 3.9573 33 1 -0.2089 -7.0559 3.2929 34 1 0.6987 -9.6262 4.1220 35 1 0.6334 -9.2165 2.3898 36 1 3.0247 -9.7500 2.1369 37 1 2.1866 -11.1402 2.8712 38 1 4.3367 -10.5703 4.0463 39 1 2.9156 -10.4414 5.1112 40 1 4.5859 -8.3869 4.9165 41 1 -2.4244 -3.9767 -0.5119 42 1 -0.5230 -2.4888 1.0265 43 1 -0.6020 -1.7575 -0.6056 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083601473.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:38 Heat of formation + Delta-G solvation = -100.167791 kcal Electronic energy + Delta-G solvation = -27017.742306 eV Core-core repulsion = 23097.971340 eV Total energy + Delta-G solvation = -3919.770965 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.163 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.86537 -40.79478 -39.22659 -37.47995 -36.63900 -35.86090 -35.30184 -33.57723 -32.03090 -30.57158 -29.31361 -28.42233 -26.53320 -26.16236 -24.08335 -22.40944 -22.12035 -21.24376 -19.96512 -19.11958 -18.64050 -18.47216 -18.28615 -17.99524 -17.20759 -16.74456 -16.59239 -16.11698 -15.76860 -15.67046 -15.23532 -15.06174 -14.75989 -14.68460 -14.59558 -14.21899 -14.18866 -13.87242 -13.35464 -13.19345 -12.89079 -12.79025 -12.72907 -12.63347 -12.32957 -12.23170 -12.09282 -11.96899 -11.64796 -11.23655 -11.12946 -10.84742 -10.75973 -10.16456 -10.06193 -9.60811 -8.96507 -7.83016 -5.28185 1.44985 1.47907 1.52731 1.54426 1.63250 2.06059 2.35822 2.45909 2.91472 3.10192 3.27147 3.66161 3.73868 3.79151 3.85451 3.97862 4.00040 4.08369 4.29334 4.31440 4.40664 4.47977 4.49146 4.64715 4.67962 4.77301 4.83255 4.86162 4.89334 5.22246 5.33893 5.38605 5.44014 5.52228 5.58956 5.70427 6.08194 6.22720 6.57922 6.78669 6.88827 7.05647 7.24985 7.52138 7.68948 8.31469 9.17773 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.020146 B = 0.003405 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.537387 B = 8220.958889 C = 9102.257291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.057 4.057 3 Si 0.981 3.019 4 H -0.286 1.286 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.249 4.249 8 H 0.072 0.928 9 N -0.617 5.617 10 C 0.127 3.873 11 C 0.156 3.844 12 H 0.096 0.904 13 N -0.695 5.695 14 C 0.494 3.506 15 O -0.578 6.578 16 C 0.117 3.883 17 N -0.606 5.606 18 C 0.107 3.893 19 C -0.151 4.151 20 C 0.107 3.893 21 N -0.733 5.733 22 C 0.701 3.299 23 O -0.653 6.653 24 C 0.092 3.908 25 H 0.084 0.916 26 O -0.557 6.557 27 C 0.134 3.866 28 H 0.251 0.749 29 H 0.033 0.967 30 H 0.005 0.995 31 H 0.411 0.589 32 H 0.103 0.897 33 H 0.154 0.846 34 H 0.099 0.901 35 H 0.085 0.915 36 H 0.050 0.950 37 H 0.133 0.867 38 H 0.105 0.895 39 H 0.089 0.911 40 H 0.416 0.584 41 H 0.398 0.602 42 H 0.000 1.000 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.403 -23.712 6.576 24.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.250 4.250 3 Si 0.809 3.191 4 H -0.211 1.211 5 H -0.211 1.211 6 H -0.202 1.202 7 C -0.377 4.377 8 H 0.090 0.910 9 N -0.345 5.345 10 C 0.000 4.000 11 C 0.049 3.951 12 H 0.114 0.886 13 N -0.346 5.346 14 C 0.280 3.720 15 O -0.458 6.458 16 C -0.011 4.011 17 N -0.341 5.341 18 C -0.014 4.014 19 C -0.189 4.189 20 C -0.016 4.016 21 N -0.390 5.390 22 C 0.401 3.599 23 O -0.536 6.536 24 C 0.031 3.969 25 H 0.102 0.898 26 O -0.365 6.365 27 C 0.009 3.991 28 H 0.061 0.939 29 H 0.051 0.949 30 H 0.023 0.977 31 H 0.247 0.753 32 H 0.121 0.879 33 H 0.172 0.828 34 H 0.117 0.883 35 H 0.103 0.897 36 H 0.069 0.931 37 H 0.151 0.849 38 H 0.123 0.877 39 H 0.107 0.893 40 H 0.253 0.747 41 H 0.249 0.751 42 H 0.018 0.982 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.478 -23.834 6.462 24.818 hybrid contribution 0.515 2.056 -0.022 2.119 sum -1.963 -21.778 6.439 22.795 Atomic orbital electron populations 1.69945 1.05814 1.25394 1.57914 1.25554 0.96786 1.00613 1.02025 0.85126 0.77254 0.78760 0.77999 1.21147 1.21106 1.20234 1.19354 0.90840 0.83805 1.43730 0.91028 1.44558 1.02727 1.00251 1.86959 1.21781 0.95069 0.85504 0.97625 1.21717 0.93627 0.95198 0.84520 0.88608 1.45629 1.39423 1.33273 1.16266 1.21819 0.80825 0.79414 0.89947 1.90630 1.33127 1.58682 1.63361 1.21261 0.96894 0.91288 0.91639 1.46461 1.17657 1.08040 1.61956 1.21983 0.97708 0.79103 1.02605 1.22264 0.96042 1.02742 0.97827 1.21849 1.01416 0.80138 0.98218 1.44968 1.20998 1.06745 1.66296 1.15765 0.81272 0.84457 0.78360 1.90941 1.77124 1.22228 1.63333 1.23269 0.83434 0.92579 0.97609 0.89840 1.86295 1.15187 1.58634 1.76343 1.22442 0.84033 0.94921 0.97717 0.93925 0.94927 0.97701 0.75298 0.87882 0.82812 0.88338 0.89696 0.93081 0.84874 0.87719 0.89281 0.74669 0.75149 0.98168 0.89629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.65 10.08 21.65 0.22 -54.43 16 2 C -0.06 -3.23 5.49 84.86 0.47 -2.76 16 3 Si 0.98 46.35 29.55 68.60 2.03 48.38 16 4 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 5 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 6 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 7 C -0.25 -14.51 10.27 84.03 0.86 -13.64 16 8 H 0.07 4.14 7.83 -2.91 -0.02 4.11 16 9 N -0.62 -32.92 3.39 -691.58 -2.35 -35.26 16 10 C 0.13 5.98 6.98 86.73 0.61 6.58 16 11 C 0.16 5.95 3.13 46.18 0.14 6.09 16 12 H 0.10 3.56 7.69 -2.39 -0.02 3.54 16 13 N -0.69 -23.87 4.79 -436.93 -2.09 -25.96 16 14 C 0.49 16.86 7.89 87.66 0.69 17.55 16 15 O -0.58 -23.81 16.16 -3.03 -0.05 -23.86 16 16 C 0.12 3.00 5.80 85.63 0.50 3.49 16 17 N -0.61 -15.10 2.30 -845.14 -1.95 -17.04 16 18 C 0.11 1.58 6.50 86.57 0.56 2.15 16 19 C -0.15 -1.82 6.21 30.84 0.19 -1.62 16 20 C 0.11 1.16 7.20 86.48 0.62 1.78 16 21 N -0.73 -15.48 5.58 -479.86 -2.68 -18.16 16 22 C 0.70 21.52 8.17 179.45 1.47 22.98 16 23 O -0.65 -27.27 16.49 -4.00 -0.07 -27.34 16 24 C 0.09 3.30 4.23 32.06 0.14 3.44 16 25 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 26 O -0.56 -16.01 12.64 -148.98 -1.88 -17.90 16 27 C 0.13 6.34 5.62 86.93 0.49 6.83 16 28 H 0.25 14.09 8.31 -92.70 -0.77 13.32 16 29 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.00 0.26 8.05 -2.38 -0.02 0.24 16 31 H 0.41 13.08 8.21 -92.71 -0.76 12.31 16 32 H 0.10 2.98 7.29 -2.38 -0.02 2.97 16 33 H 0.15 2.40 8.05 -2.39 -0.02 2.38 16 34 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.08 1.23 8.06 -2.38 -0.02 1.21 16 36 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 37 H 0.13 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.42 8.09 8.88 -92.70 -0.82 7.27 16 41 H 0.40 8.33 9.12 -74.05 -0.68 7.65 16 42 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 43 H 0.09 4.51 5.86 -2.39 -0.01 4.49 16 Total: -1.00 -85.14 352.31 -3.28 -88.41 By element: Atomic # 1 Polarization: 31.49 SS G_CDS: -1.20 Total: 30.29 kcal Atomic # 6 Polarization: 46.13 SS G_CDS: 6.74 Total: 52.86 kcal Atomic # 7 Polarization: -142.01 SS G_CDS: -8.85 Total: -150.86 kcal Atomic # 8 Polarization: -67.10 SS G_CDS: -2.00 Total: -69.09 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -85.14 -3.28 -88.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083601473.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.753 kcal (2) G-P(sol) polarization free energy of solvation -85.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds