Wall clock time and date at job start Fri Apr 10 2020 18:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86799 * 119.99794 * 2 1 4 4 H 1.48500 * 109.47017 * 239.99732 * 3 2 1 5 5 H 1.48498 * 109.47373 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46891 * 120.00311 * 3 2 1 7 7 C 1.38812 * 119.99710 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99404 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00004 * 359.97438 * 7 2 1 10 10 C 1.47432 * 125.64321 * 179.97438 * 9 7 2 11 11 C 1.54909 * 104.82763 * 204.16442 * 10 9 7 12 12 H 1.09005 * 111.00359 * 81.06796 * 11 10 9 13 13 N 1.46498 * 111.00419 * 204.91528 * 11 10 9 14 14 C 1.34780 * 120.00415 * 267.20144 * 13 11 10 15 15 O 1.21284 * 119.99699 * 359.97438 * 14 13 11 16 16 C 1.50690 * 120.00232 * 179.97438 * 14 13 11 17 17 N 1.46907 * 109.47261 * 179.97438 * 16 14 13 18 18 C 1.47190 * 111.00044 * 170.00092 * 17 16 14 19 19 C 1.52980 * 108.72852 * 54.36938 * 18 17 16 20 20 N 1.46009 * 110.04373 * 50.29241 * 19 18 17 21 21 C 1.33712 * 122.92611 * 341.83260 * 20 19 18 22 22 O 1.21282 * 118.62615 * 181.68640 * 21 20 19 23 23 C 1.46894 * 110.99983 * 292.89466 * 17 16 14 24 24 C 1.55150 * 101.58625 * 322.99424 * 11 10 9 25 25 H 1.08997 * 110.87514 * 153.93941 * 24 11 10 26 26 O 1.42903 * 110.71979 * 277.14209 * 24 11 10 27 27 C 1.47016 * 125.65363 * 0.02964 * 9 7 2 28 28 H 0.97000 * 119.99929 * 359.97438 * 1 2 3 29 29 H 1.09000 * 110.36465 * 323.00325 * 10 9 7 30 30 H 1.09001 * 110.36719 * 85.21919 * 10 9 7 31 31 H 0.97003 * 120.00202 * 87.19599 * 13 11 10 32 32 H 1.08998 * 109.47464 * 300.00015 * 16 14 13 33 33 H 1.09004 * 109.47276 * 60.00147 * 16 14 13 34 34 H 1.08996 * 109.59110 * 174.14187 * 18 17 16 35 35 H 1.09004 * 109.59264 * 294.44129 * 18 17 16 36 36 H 1.09004 * 109.37840 * 170.46748 * 19 18 17 37 37 H 1.09003 * 109.37563 * 290.11210 * 19 18 17 38 38 H 0.97001 * 118.53612 * 161.81864 * 20 19 18 39 39 H 1.09005 * 109.38857 * 47.08101 * 23 17 16 40 40 H 1.08998 * 109.38728 * 166.77487 * 23 17 16 41 41 H 0.96700 * 114.00311 * 174.97591 * 26 24 11 42 42 H 1.09001 * 109.88215 * 59.48218 * 27 9 7 43 43 H 1.09006 * 109.88177 * 298.32537 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 1.9335 -3.7312 -0.0016 11 6 0.8518 -4.6555 -0.6142 12 1 0.8565 -4.5945 -1.7025 13 7 1.0290 -6.0393 -0.1671 14 6 1.7592 -6.8980 -0.9061 15 8 2.2691 -6.5252 -1.9415 16 6 1.9420 -8.3212 -0.4459 17 7 2.7702 -9.0476 -1.4178 18 6 3.1683 -10.3636 -0.8923 19 6 1.9103 -11.1250 -0.4703 20 7 0.9275 -11.1049 -1.5499 21 6 0.9741 -10.2289 -2.5590 22 8 0.0993 -10.2623 -3.3984 23 6 2.0651 -9.2050 -2.6968 24 6 -0.4484 -4.0441 -0.0287 25 1 -1.3005 -4.2505 -0.6763 26 8 -0.6884 -4.5356 1.2915 27 6 -0.1375 -2.5328 -0.0006 28 1 -0.4850 0.8401 0.0004 29 1 2.8329 -3.7399 -0.6172 30 1 2.1683 -4.0421 1.0164 31 1 0.6210 -6.3376 0.6608 32 1 2.4327 -8.3283 0.5273 33 1 0.9685 -8.8050 -0.3654 34 1 3.6918 -10.9235 -1.6673 35 1 3.8238 -10.2305 -0.0316 36 1 2.1728 -12.1575 -0.2395 37 1 1.4837 -10.6555 0.4160 38 1 0.2088 -11.7562 -1.5345 39 1 1.6297 -8.2496 -2.9899 40 1 2.7710 -9.5290 -3.4616 41 1 -1.4462 -4.1269 1.7317 42 1 -0.5576 -2.0513 -0.8837 43 1 -0.5544 -2.0853 0.9017 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083697065.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:45 Heat of formation + Delta-G solvation = -65.669929 kcal Electronic energy + Delta-G solvation = -26779.673961 eV Core-core repulsion = 22861.398935 eV Total energy + Delta-G solvation = -3918.275026 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.163 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -41.10981 -39.52930 -38.08213 -37.27763 -34.84809 -34.46266 -33.92433 -31.72474 -30.19646 -29.49457 -28.22862 -26.91804 -25.32706 -24.36863 -23.15994 -21.03747 -20.46444 -19.98061 -19.37880 -17.74815 -17.62405 -17.11643 -16.77193 -16.46802 -16.04193 -15.54057 -15.38267 -14.92292 -14.79937 -14.58772 -14.20884 -14.01981 -13.58227 -13.47045 -13.11373 -12.96466 -12.70465 -12.63132 -12.29372 -11.95400 -11.90132 -11.75209 -11.28177 -10.95908 -10.83151 -10.71735 -10.51591 -10.44609 -10.15068 -9.81991 -9.66783 -9.53626 -9.33660 -8.73386 -8.66375 -8.58779 -6.88047 -5.75043 -3.08143 2.29543 2.71742 2.79472 3.09262 3.41152 3.45045 3.46360 3.66215 4.12778 4.39105 4.45593 4.47071 4.54035 4.69633 4.87600 4.90023 5.07463 5.09702 5.21775 5.29862 5.32753 5.37609 5.54230 5.56135 5.70894 5.87068 6.07244 6.21559 6.22036 6.41571 6.49860 6.59424 6.66397 6.88073 6.93160 7.32005 7.43154 7.71429 7.79340 7.83982 8.05668 8.19512 8.44492 9.17583 9.77820 10.42111 11.37175 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.027574 B = 0.002886 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.204570 B = 9700.607482 C = 9957.808531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.009 4.009 3 Si 0.915 3.085 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.225 4.225 8 H 0.079 0.921 9 N -0.601 5.601 10 C 0.132 3.868 11 C 0.140 3.860 12 H 0.105 0.895 13 N -0.707 5.707 14 C 0.509 3.491 15 O -0.525 6.525 16 C 0.028 3.972 17 N -0.505 5.505 18 C 0.036 3.964 19 C 0.070 3.930 20 N -0.727 5.727 21 C 0.486 3.514 22 O -0.548 6.548 23 C 0.036 3.964 24 C 0.067 3.933 25 H 0.060 0.940 26 O -0.569 6.569 27 C 0.154 3.846 28 H 0.253 0.747 29 H 0.044 0.956 30 H 0.025 0.975 31 H 0.406 0.594 32 H 0.111 0.889 33 H 0.065 0.935 34 H 0.091 0.909 35 H 0.103 0.897 36 H 0.084 0.916 37 H 0.070 0.930 38 H 0.398 0.602 39 H 0.130 0.870 40 H 0.116 0.884 41 H 0.380 0.620 42 H 0.056 0.944 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.556 -23.261 2.993 23.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.205 4.205 3 Si 0.745 3.255 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.354 4.354 8 H 0.097 0.903 9 N -0.328 5.328 10 C 0.005 3.995 11 C 0.034 3.966 12 H 0.123 0.877 13 N -0.359 5.359 14 C 0.293 3.707 15 O -0.401 6.401 16 C -0.103 4.103 17 N -0.228 5.228 18 C -0.093 4.093 19 C -0.056 4.056 20 N -0.381 5.381 21 C 0.271 3.729 22 O -0.425 6.425 23 C -0.094 4.094 24 C 0.007 3.993 25 H 0.078 0.922 26 O -0.376 6.376 27 C 0.028 3.972 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.043 0.957 31 H 0.241 0.759 32 H 0.129 0.871 33 H 0.083 0.917 34 H 0.109 0.891 35 H 0.121 0.879 36 H 0.102 0.898 37 H 0.089 0.911 38 H 0.234 0.766 39 H 0.148 0.852 40 H 0.134 0.866 41 H 0.228 0.772 42 H 0.074 0.926 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.556 -22.656 1.553 22.853 hybrid contribution -1.277 0.319 0.905 1.597 sum 1.278 -22.337 2.458 22.508 Atomic orbital electron populations 1.69903 1.04918 1.25259 1.57429 1.24794 0.95779 0.97726 1.02190 0.86144 0.78427 0.82906 0.77978 1.21054 1.21599 1.21159 1.19053 0.90546 0.82183 1.43577 0.90283 1.44273 1.01226 0.99926 1.87333 1.21825 0.94592 0.85736 0.97364 1.22344 0.95245 0.79430 0.99545 0.87711 1.45730 1.52643 1.11070 1.26491 1.20331 0.78728 0.87002 0.84604 1.90705 1.47311 1.78204 1.23862 1.22120 0.97866 0.92931 0.97432 1.62170 1.40749 1.17062 1.02834 1.22675 0.95739 0.88381 1.02461 1.22168 0.90679 1.02630 0.90150 1.45674 1.31027 1.36025 1.25358 1.21536 0.87974 0.82530 0.80836 1.90774 1.39000 1.71991 1.40687 1.22658 0.93786 0.99503 0.93472 1.23515 0.95610 0.96933 0.83210 0.92180 1.86213 1.54551 1.67274 1.29543 1.21876 0.85599 0.87719 1.01965 0.93666 0.93739 0.95683 0.75913 0.87094 0.91666 0.89062 0.87855 0.89772 0.91139 0.76616 0.85214 0.86622 0.77199 0.92620 0.92939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.80 10.31 55.49 0.57 -26.23 16 2 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 3 Si 0.92 22.17 29.55 -169.99 -5.02 17.15 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.23 -6.34 10.28 -15.06 -0.15 -6.49 16 8 H 0.08 2.16 7.83 -52.48 -0.41 1.75 16 9 N -0.60 -15.40 3.39 -170.07 -0.58 -15.98 16 10 C 0.13 2.87 6.92 -2.52 -0.02 2.85 16 11 C 0.14 2.57 3.30 -65.79 -0.22 2.35 16 12 H 0.11 2.08 7.54 -51.93 -0.39 1.69 16 13 N -0.71 -10.33 5.17 -51.73 -0.27 -10.59 16 14 C 0.51 7.30 7.43 -10.99 -0.08 7.22 16 15 O -0.52 -9.54 14.16 5.55 0.08 -9.46 16 16 C 0.03 0.27 4.51 -4.98 -0.02 0.24 16 17 N -0.51 -4.85 4.75 -237.55 -1.13 -5.98 16 18 C 0.04 0.20 6.03 -3.68 -0.02 0.18 16 19 C 0.07 0.31 6.46 -4.32 -0.03 0.29 16 20 N -0.73 -5.55 5.33 -61.06 -0.33 -5.88 16 21 C 0.49 5.60 7.06 -11.67 -0.08 5.52 16 22 O -0.55 -8.75 17.82 5.56 0.10 -8.65 16 23 C 0.04 0.41 5.49 -5.19 -0.03 0.38 16 24 C 0.07 1.20 4.20 -24.90 -0.10 1.10 16 25 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 26 O -0.57 -8.84 12.15 -35.23 -0.43 -9.27 16 27 C 0.15 3.59 5.13 -3.07 -0.02 3.57 16 28 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 29 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.41 5.14 7.59 -40.82 -0.31 4.83 16 32 H 0.11 0.80 8.08 -51.93 -0.42 0.38 16 33 H 0.07 0.57 6.23 -51.93 -0.32 0.25 16 34 H 0.09 0.46 8.08 -51.93 -0.42 0.04 16 35 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 37 H 0.07 0.27 7.10 -51.93 -0.37 -0.10 16 38 H 0.40 2.70 8.84 -40.82 -0.36 2.34 16 39 H 0.13 1.84 5.88 -51.93 -0.31 1.54 16 40 H 0.12 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.38 4.66 9.09 45.56 0.41 5.08 16 42 H 0.06 1.44 7.38 -51.93 -0.38 1.06 16 43 H 0.05 1.33 7.42 -51.93 -0.39 0.94 16 LS Contribution 344.49 15.07 5.19 5.19 Total: -1.00 -35.96 344.49 -8.01 -43.98 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -5.34 Total: 8.87 kcal Atomic # 6 Polarization: 17.72 SS G_CDS: -0.87 Total: 16.85 kcal Atomic # 7 Polarization: -62.93 SS G_CDS: -1.73 Total: -64.65 kcal Atomic # 8 Polarization: -27.13 SS G_CDS: -0.25 Total: -27.38 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -35.96 -8.01 -43.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083697065.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.695 kcal (2) G-P(sol) polarization free energy of solvation -35.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds