Wall clock time and date at job start Fri Apr 10 2020 18:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86799 * 119.99794 * 2 1 4 4 H 1.48500 * 109.47017 * 239.99732 * 3 2 1 5 5 H 1.48498 * 109.47373 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46891 * 120.00311 * 3 2 1 7 7 C 1.38812 * 119.99710 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99404 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00004 * 359.97438 * 7 2 1 10 10 C 1.47432 * 125.64321 * 179.97438 * 9 7 2 11 11 C 1.54909 * 104.82763 * 204.16442 * 10 9 7 12 12 H 1.09005 * 111.00359 * 81.06796 * 11 10 9 13 13 N 1.46498 * 111.00419 * 204.91528 * 11 10 9 14 14 C 1.34780 * 120.00415 * 267.20144 * 13 11 10 15 15 O 1.21284 * 119.99699 * 359.97438 * 14 13 11 16 16 C 1.50690 * 120.00232 * 179.97438 * 14 13 11 17 17 N 1.46907 * 109.47261 * 179.97438 * 16 14 13 18 18 C 1.47190 * 111.00044 * 170.00092 * 17 16 14 19 19 C 1.52980 * 108.72852 * 54.36938 * 18 17 16 20 20 N 1.46009 * 110.04373 * 50.29241 * 19 18 17 21 21 C 1.33712 * 122.92611 * 341.83260 * 20 19 18 22 22 O 1.21282 * 118.62615 * 181.68640 * 21 20 19 23 23 C 1.46894 * 110.99983 * 292.89466 * 17 16 14 24 24 C 1.55150 * 101.58625 * 322.99424 * 11 10 9 25 25 H 1.08997 * 110.87514 * 153.93941 * 24 11 10 26 26 O 1.42903 * 110.71979 * 277.14209 * 24 11 10 27 27 C 1.47016 * 125.65363 * 0.02964 * 9 7 2 28 28 H 0.97000 * 119.99929 * 359.97438 * 1 2 3 29 29 H 1.09000 * 110.36465 * 323.00325 * 10 9 7 30 30 H 1.09001 * 110.36719 * 85.21919 * 10 9 7 31 31 H 0.97003 * 120.00202 * 87.19599 * 13 11 10 32 32 H 1.08998 * 109.47464 * 300.00015 * 16 14 13 33 33 H 1.09004 * 109.47276 * 60.00147 * 16 14 13 34 34 H 1.08996 * 109.59110 * 174.14187 * 18 17 16 35 35 H 1.09004 * 109.59264 * 294.44129 * 18 17 16 36 36 H 1.09004 * 109.37840 * 170.46748 * 19 18 17 37 37 H 1.09003 * 109.37563 * 290.11210 * 19 18 17 38 38 H 0.97001 * 118.53612 * 161.81864 * 20 19 18 39 39 H 1.09005 * 109.38857 * 47.08101 * 23 17 16 40 40 H 1.08998 * 109.38728 * 166.77487 * 23 17 16 41 41 H 0.96700 * 114.00311 * 174.97591 * 26 24 11 42 42 H 1.09001 * 109.88215 * 59.48218 * 27 9 7 43 43 H 1.09006 * 109.88177 * 298.32537 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 1.9335 -3.7312 -0.0016 11 6 0.8518 -4.6555 -0.6142 12 1 0.8565 -4.5945 -1.7025 13 7 1.0290 -6.0393 -0.1671 14 6 1.7592 -6.8980 -0.9061 15 8 2.2691 -6.5252 -1.9415 16 6 1.9420 -8.3212 -0.4459 17 7 2.7702 -9.0476 -1.4178 18 6 3.1683 -10.3636 -0.8923 19 6 1.9103 -11.1250 -0.4703 20 7 0.9275 -11.1049 -1.5499 21 6 0.9741 -10.2289 -2.5590 22 8 0.0993 -10.2623 -3.3984 23 6 2.0651 -9.2050 -2.6968 24 6 -0.4484 -4.0441 -0.0287 25 1 -1.3005 -4.2505 -0.6763 26 8 -0.6884 -4.5356 1.2915 27 6 -0.1375 -2.5328 -0.0006 28 1 -0.4850 0.8401 0.0004 29 1 2.8329 -3.7399 -0.6172 30 1 2.1683 -4.0421 1.0164 31 1 0.6210 -6.3376 0.6608 32 1 2.4327 -8.3283 0.5273 33 1 0.9685 -8.8050 -0.3654 34 1 3.6918 -10.9235 -1.6673 35 1 3.8238 -10.2305 -0.0316 36 1 2.1728 -12.1575 -0.2395 37 1 1.4837 -10.6555 0.4160 38 1 0.2088 -11.7562 -1.5345 39 1 1.6297 -8.2496 -2.9899 40 1 2.7710 -9.5290 -3.4616 41 1 -1.4462 -4.1269 1.7317 42 1 -0.5576 -2.0513 -0.8837 43 1 -0.5544 -2.0853 0.9017 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083697065.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:43 Heat of formation + Delta-G solvation = -99.919997 kcal Electronic energy + Delta-G solvation = -26781.159156 eV Core-core repulsion = 22861.398935 eV Total energy + Delta-G solvation = -3919.760220 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.163 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -41.92388 -40.78085 -39.46437 -38.21519 -36.44505 -35.46497 -35.07815 -33.60760 -30.84109 -30.79063 -29.73319 -28.48358 -26.50348 -25.77630 -23.89954 -22.48342 -21.99727 -21.43237 -20.19745 -19.20272 -18.48565 -18.38965 -18.11222 -17.38169 -16.96952 -16.86963 -16.63227 -16.16021 -15.84914 -15.77043 -15.66679 -15.14059 -14.77661 -14.72794 -14.42951 -14.33826 -13.98757 -13.88848 -13.51468 -13.17516 -12.89750 -12.74466 -12.72685 -12.62673 -12.29953 -12.26501 -12.13853 -11.92029 -11.86713 -11.63364 -10.93002 -10.81216 -10.76381 -10.17473 -10.03812 -9.35915 -8.94900 -7.88696 -5.24614 1.42978 1.45499 1.48922 1.54990 1.64511 1.95813 2.18879 2.48852 2.85558 3.18496 3.30406 3.51008 3.58002 3.75032 3.85489 3.91409 3.95605 4.03800 4.21823 4.26530 4.27470 4.41591 4.51078 4.54411 4.66345 4.72253 4.78983 4.84950 5.00108 5.06665 5.35783 5.44205 5.50872 5.55670 5.63914 5.77337 5.88437 6.14248 6.17085 6.65038 6.85118 7.06245 7.06313 7.32584 7.70958 8.34417 9.21054 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.027574 B = 0.002886 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.204570 B = 9700.607482 C = 9957.808531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.061 4.061 3 Si 0.980 3.020 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.248 4.248 8 H 0.078 0.922 9 N -0.622 5.622 10 C 0.134 3.866 11 C 0.153 3.847 12 H 0.086 0.914 13 N -0.697 5.697 14 C 0.502 3.498 15 O -0.568 6.568 16 C 0.039 3.961 17 N -0.520 5.520 18 C 0.034 3.966 19 C 0.067 3.933 20 N -0.712 5.712 21 C 0.486 3.514 22 O -0.604 6.604 23 C 0.042 3.958 24 C 0.092 3.908 25 H 0.084 0.916 26 O -0.562 6.562 27 C 0.160 3.840 28 H 0.249 0.751 29 H 0.028 0.972 30 H 0.030 0.970 31 H 0.419 0.581 32 H 0.147 0.853 33 H 0.080 0.920 34 H 0.096 0.904 35 H 0.130 0.870 36 H 0.117 0.883 37 H 0.089 0.911 38 H 0.404 0.596 39 H 0.094 0.906 40 H 0.121 0.879 41 H 0.398 0.602 42 H 0.022 0.978 43 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.243 -25.618 5.038 26.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.254 4.254 3 Si 0.808 3.192 4 H -0.206 1.206 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.377 4.377 8 H 0.096 0.904 9 N -0.349 5.349 10 C 0.008 3.992 11 C 0.046 3.954 12 H 0.104 0.896 13 N -0.350 5.350 14 C 0.290 3.710 15 O -0.446 6.446 16 C -0.092 4.092 17 N -0.243 5.243 18 C -0.093 4.093 19 C -0.058 4.058 20 N -0.364 5.364 21 C 0.272 3.728 22 O -0.485 6.485 23 C -0.089 4.089 24 C 0.032 3.968 25 H 0.102 0.898 26 O -0.371 6.371 27 C 0.034 3.966 28 H 0.059 0.941 29 H 0.046 0.954 30 H 0.048 0.952 31 H 0.257 0.743 32 H 0.165 0.835 33 H 0.098 0.902 34 H 0.114 0.886 35 H 0.148 0.852 36 H 0.135 0.865 37 H 0.107 0.893 38 H 0.241 0.759 39 H 0.112 0.888 40 H 0.139 0.861 41 H 0.249 0.751 42 H 0.040 0.960 43 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 3.257 -25.089 3.685 25.567 hybrid contribution -1.424 0.995 0.326 1.767 sum 1.834 -24.094 4.011 24.495 Atomic orbital electron populations 1.70109 1.06082 1.25576 1.57981 1.25621 0.96747 1.00859 1.02187 0.85131 0.77213 0.78661 0.78193 1.20557 1.21631 1.20213 1.19400 0.90968 0.83668 1.43659 0.90410 1.44559 1.02433 1.00714 1.87213 1.21871 0.94991 0.85008 0.97361 1.21860 0.94109 0.81170 0.98289 0.89599 1.45579 1.52970 1.09371 1.27116 1.21289 0.77312 0.88746 0.83696 1.90697 1.48862 1.79307 1.25747 1.22130 0.99257 0.89301 0.98512 1.62165 1.40235 1.19607 1.02305 1.22875 0.96589 0.86286 1.03558 1.22462 0.89337 1.04801 0.89165 1.45661 1.31496 1.34526 1.24724 1.21557 0.87231 0.82958 0.81047 1.90746 1.41002 1.73697 1.43090 1.22433 0.93840 0.97719 0.94932 1.23104 0.96082 0.92767 0.84881 0.89813 1.86174 1.55764 1.66772 1.28354 1.21720 0.84280 0.91416 0.99172 0.94149 0.95393 0.95232 0.74339 0.83527 0.90223 0.88596 0.85171 0.86455 0.89316 0.75912 0.88758 0.86110 0.75145 0.96022 0.95377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.25 10.31 21.65 0.22 -56.03 16 2 C -0.06 -3.49 5.49 84.86 0.47 -3.02 16 3 Si 0.98 46.14 29.55 68.60 2.03 48.17 16 4 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 5 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 6 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 7 C -0.25 -14.29 10.28 84.03 0.86 -13.43 16 8 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 9 N -0.62 -32.74 3.39 -691.98 -2.35 -35.09 16 10 C 0.13 5.91 6.92 86.85 0.60 6.51 16 11 C 0.15 5.59 3.30 46.38 0.15 5.74 16 12 H 0.09 3.51 7.54 -2.38 -0.02 3.49 16 13 N -0.70 -19.29 5.17 -435.98 -2.25 -21.54 16 14 C 0.50 13.86 7.43 87.65 0.65 14.51 16 15 O -0.57 -20.97 14.16 -3.04 -0.04 -21.01 16 16 C 0.04 0.63 4.51 85.55 0.39 1.01 16 17 N -0.52 -8.77 4.75 -905.48 -4.30 -13.07 16 18 C 0.03 0.24 6.03 86.24 0.52 0.76 16 19 C 0.07 0.29 6.46 86.47 0.56 0.85 16 20 N -0.71 -8.95 5.33 -466.09 -2.48 -11.43 16 21 C 0.49 10.85 7.06 87.68 0.62 11.47 16 22 O -0.60 -19.70 17.82 -3.04 -0.05 -19.75 16 23 C 0.04 0.93 5.49 85.42 0.47 1.40 16 24 C 0.09 3.22 4.20 31.78 0.13 3.35 16 25 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 26 O -0.56 -16.18 12.15 -148.98 -1.81 -17.99 16 27 C 0.16 7.63 5.13 86.73 0.45 8.08 16 28 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 29 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.42 9.40 7.59 -92.71 -0.70 8.70 16 32 H 0.15 1.38 8.08 -2.39 -0.02 1.36 16 33 H 0.08 1.11 6.23 -2.39 -0.01 1.10 16 34 H 0.10 0.63 8.08 -2.39 -0.02 0.61 16 35 H 0.13 0.30 8.14 -2.38 -0.02 0.28 16 36 H 0.12 -0.13 8.14 -2.39 -0.02 -0.15 16 37 H 0.09 0.17 7.10 -2.39 -0.02 0.16 16 38 H 0.40 4.45 8.84 -92.71 -0.82 3.63 16 39 H 0.09 2.81 5.88 -2.38 -0.01 2.80 16 40 H 0.12 2.43 8.14 -2.39 -0.02 2.41 16 41 H 0.40 8.80 9.09 -74.06 -0.67 8.13 16 42 H 0.02 1.17 7.38 -2.39 -0.02 1.15 16 43 H 0.03 1.46 7.42 -2.38 -0.02 1.44 16 Total: -1.00 -82.90 344.49 -6.30 -89.21 By element: Atomic # 1 Polarization: 22.45 SS G_CDS: -1.12 Total: 21.33 kcal Atomic # 6 Polarization: 31.35 SS G_CDS: 5.87 Total: 37.22 kcal Atomic # 7 Polarization: -126.00 SS G_CDS: -11.16 Total: -137.16 kcal Atomic # 8 Polarization: -56.85 SS G_CDS: -1.91 Total: -58.75 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.17 kcal Total: -82.90 -6.30 -89.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083697065.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.713 kcal (2) G-P(sol) polarization free energy of solvation -82.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds