Wall clock time and date at job start Fri Apr 10 2020 18:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86794 * 119.99943 * 2 1 4 4 H 1.48508 * 109.47052 * 270.00180 * 3 2 1 5 5 H 1.48496 * 109.47360 * 29.99902 * 3 2 1 6 6 H 1.48495 * 109.47195 * 150.00514 * 3 2 1 7 7 C 1.38807 * 119.99754 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99726 * 190.34656 * 7 2 1 9 9 N 1.36940 * 120.00474 * 10.34404 * 7 2 1 10 10 C 1.46610 * 119.89287 * 208.52880 * 9 7 2 11 11 C 1.53110 * 108.00751 * 237.30297 * 10 9 7 12 12 C 1.53007 * 109.44832 * 301.02569 * 11 10 9 13 13 H 1.09005 * 113.42294 * 275.03450 * 12 11 10 14 14 C 1.54645 * 110.83720 * 143.88563 * 12 11 10 15 15 N 1.47802 * 85.79620 * 270.23193 * 14 12 11 16 16 C 1.34774 * 135.01664 * 153.78528 * 15 14 12 17 17 O 1.21277 * 120.00041 * 184.74324 * 16 15 14 18 18 C 1.50700 * 119.99821 * 4.74508 * 16 15 14 19 19 F 1.39904 * 109.54404 * 306.03997 * 18 16 15 20 20 C 1.53176 * 109.54158 * 185.77460 * 18 16 15 21 21 C 1.53094 * 109.16227 * 183.15346 * 20 18 16 22 22 O 1.42904 * 109.41668 * 57.60622 * 21 20 18 23 23 C 1.42900 * 114.09673 * 298.84618 * 22 21 20 24 24 C 1.53088 * 109.41973 * 61.15578 * 23 22 21 25 25 C 1.46817 * 89.97087 * 333.80473 * 15 14 12 26 26 H 1.08995 * 110.91356 * 274.54428 * 25 15 14 27 27 C 1.45684 * 119.88626 * 28.50342 * 9 7 2 28 28 H 0.96999 * 119.99990 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.75938 * 356.92921 * 10 9 7 30 30 H 1.09004 * 109.75609 * 117.68138 * 10 9 7 31 31 H 1.08997 * 109.47167 * 61.02133 * 11 10 9 32 32 H 1.09003 * 109.46985 * 181.03157 * 11 10 9 33 33 H 1.09002 * 113.82060 * 24.45382 * 14 12 11 34 34 H 1.08998 * 113.82424 * 156.01078 * 14 12 11 35 35 H 1.08997 * 109.52538 * 303.05411 * 20 18 16 36 36 H 1.08999 * 109.52171 * 63.24666 * 20 18 16 37 37 H 1.08999 * 109.47981 * 297.62293 * 21 20 18 38 38 H 1.09005 * 109.49123 * 177.60050 * 21 20 18 39 39 H 1.09008 * 109.47615 * 301.17224 * 23 22 21 40 40 H 1.09003 * 109.48806 * 181.14773 * 23 22 21 41 41 H 1.08998 * 109.52580 * 182.48843 * 24 23 22 42 42 H 1.08998 * 109.51957 * 62.29479 * 24 23 22 43 43 H 1.08995 * 108.71900 * 19.78749 * 27 9 7 44 44 H 1.09000 * 108.71511 * 261.75833 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4002 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.6999 7 6 2.0102 -1.2021 -0.0005 8 1 3.0771 -1.2098 0.1674 9 7 1.3423 -2.3784 -0.2140 10 6 1.8507 -3.6236 0.3693 11 6 2.0856 -4.6188 -0.7703 12 6 0.7716 -4.8578 -1.5169 13 1 0.1464 -5.6244 -1.0591 14 6 1.0247 -5.0390 -3.0317 15 7 0.8617 -3.5729 -3.1238 16 6 1.3030 -2.6155 -3.9635 17 8 1.0658 -1.4490 -3.7314 18 6 2.0911 -2.9946 -5.1907 19 9 3.1819 -3.7883 -4.8199 20 6 2.5917 -1.7269 -5.8899 21 6 3.3232 -2.1183 -7.1766 22 8 2.4417 -2.8682 -8.0149 23 6 1.9788 -4.0879 -7.4316 24 6 1.1934 -3.7758 -6.1552 25 6 0.0201 -3.5917 -1.9209 26 1 -1.0180 -3.8047 -2.1757 27 6 0.1284 -2.3880 -1.0195 28 1 -0.4850 0.8400 0.0004 29 1 2.7891 -3.4308 0.8892 30 1 1.1185 -4.0294 1.0675 31 1 2.8267 -4.2137 -1.4594 32 1 2.4475 -5.5618 -0.3604 33 1 2.0297 -5.3862 -3.2717 34 1 0.2445 -5.6018 -3.5442 35 1 1.7442 -1.0863 -6.1333 36 1 3.2756 -1.1930 -5.2301 37 1 4.1940 -2.7255 -6.9294 38 1 3.6447 -1.2180 -7.7004 39 1 2.8321 -4.7209 -7.1877 40 1 1.3318 -4.6066 -8.1390 41 1 0.8772 -4.7070 -5.6851 42 1 0.3176 -3.1764 -6.4039 43 1 0.1093 -1.4880 -1.6341 44 1 -0.7338 -2.3716 -0.3529 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084393965.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:53 Heat of formation + Delta-G solvation = -62.261575 kcal Electronic energy + Delta-G solvation = -28579.995127 eV Core-core repulsion = 24641.947937 eV Total energy + Delta-G solvation = -3938.047190 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.164 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -47.89731 -40.44017 -39.09247 -37.62035 -35.20234 -33.12786 -32.15907 -31.40502 -30.17451 -29.14820 -27.01953 -25.65734 -23.97664 -23.82631 -22.92194 -21.24811 -20.67525 -19.66064 -18.06296 -17.39150 -16.70725 -16.25390 -16.12173 -15.88136 -15.67629 -15.24272 -15.12396 -14.59814 -14.15807 -13.99282 -13.65127 -13.26710 -13.24388 -12.77275 -12.74657 -12.64123 -12.50582 -12.42573 -12.20417 -11.89896 -11.57130 -11.48500 -11.11616 -10.81833 -10.73661 -10.68846 -10.56483 -10.45788 -10.18097 -9.98984 -9.85546 -9.82545 -9.56927 -8.89386 -8.31434 -8.18347 -6.55015 -5.65606 -3.11646 2.90409 3.05907 3.47097 3.52843 3.54048 3.66088 4.19119 4.24918 4.39109 4.59189 4.65721 4.70112 4.71327 5.02193 5.16171 5.19945 5.27370 5.35643 5.40004 5.45067 5.48115 5.53855 5.55868 5.62122 5.68826 5.71241 5.88587 5.95826 6.04491 6.12420 6.16770 6.29975 6.40470 6.50780 6.58771 6.79794 6.95325 7.01678 7.48558 7.76824 7.93166 8.17412 8.53450 8.59500 9.36221 9.98889 10.48639 11.42474 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.014719 B = 0.005729 C = 0.004623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.821409 B = 4886.098654 C = 6055.238220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.012 3.988 3 Si 0.902 3.098 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.252 4.252 8 H 0.061 0.939 9 N -0.584 5.584 10 C 0.147 3.853 11 C -0.118 4.118 12 C -0.108 4.108 13 H 0.088 0.912 14 C 0.092 3.908 15 N -0.621 5.621 16 C 0.520 3.480 17 O -0.498 6.498 18 C 0.112 3.888 19 F -0.194 7.194 20 C -0.161 4.161 21 C 0.061 3.939 22 O -0.381 6.381 23 C 0.064 3.936 24 C -0.172 4.172 25 C 0.123 3.877 26 H 0.074 0.926 27 C 0.167 3.833 28 H 0.252 0.748 29 H 0.056 0.944 30 H 0.020 0.980 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.057 0.943 38 H 0.103 0.897 39 H 0.058 0.942 40 H 0.101 0.899 41 H 0.088 0.912 42 H 0.094 0.906 43 H 0.103 0.897 44 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.294 -12.920 -12.317 17.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.187 4.187 3 Si 0.732 3.268 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.381 4.381 8 H 0.079 0.921 9 N -0.306 5.306 10 C 0.021 3.979 11 C -0.158 4.158 12 C -0.127 4.127 13 H 0.106 0.894 14 C -0.031 4.031 15 N -0.357 5.357 16 C 0.305 3.695 17 O -0.371 6.371 18 C 0.091 3.909 19 F -0.175 7.175 20 C -0.199 4.199 21 C -0.015 4.015 22 O -0.300 6.300 23 C -0.013 4.013 24 C -0.210 4.210 25 C 0.020 3.980 26 H 0.092 0.908 27 C 0.040 3.960 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.038 0.962 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.117 0.883 36 H 0.113 0.887 37 H 0.075 0.925 38 H 0.121 0.879 39 H 0.076 0.924 40 H 0.119 0.881 41 H 0.107 0.893 42 H 0.112 0.888 43 H 0.121 0.879 44 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 2.091 -11.901 -12.486 17.376 hybrid contribution 0.470 0.610 0.225 0.802 sum 2.561 -11.291 -12.261 16.864 Atomic orbital electron populations 1.69978 1.05206 1.25260 1.54512 1.25028 0.95338 0.98152 1.00149 0.86297 0.78915 0.83878 0.77685 1.21372 1.21759 1.20604 1.19074 0.90612 0.84008 1.44449 0.92129 1.43432 1.28672 1.03110 1.55431 1.20760 0.97511 0.87319 0.92351 1.21874 0.94922 0.99358 0.99601 1.22838 0.98601 0.97423 0.93867 0.89419 1.23642 1.01533 0.81520 0.96407 1.49807 1.51073 1.06954 1.27913 1.20045 0.81125 0.85399 0.82891 1.90822 1.56768 1.17221 1.72335 1.21215 0.84313 0.91480 0.93932 1.92862 1.56151 1.75644 1.92838 1.22580 1.03609 0.96133 0.97616 1.22640 0.91783 0.96452 0.90651 1.87931 1.65347 1.34647 1.42048 1.22542 0.97914 0.86801 0.94056 1.22765 0.99670 1.01968 0.96580 1.22829 0.93095 0.97958 0.84138 0.90841 1.20113 0.89079 0.94695 0.92066 0.93789 0.92528 0.96181 0.91992 0.92680 0.90125 0.90483 0.88268 0.88738 0.92473 0.87901 0.92402 0.88108 0.89328 0.88784 0.87930 0.94958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.50 10.92 55.49 0.61 -26.90 16 2 C 0.01 0.35 5.03 -17.43 -0.09 0.27 16 3 Si 0.90 23.32 29.57 -169.99 -5.03 18.29 16 4 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 5 H -0.29 -7.48 7.11 56.52 0.40 -7.07 16 6 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.25 -7.26 9.51 -15.06 -0.14 -7.40 16 8 H 0.06 1.74 7.85 -52.49 -0.41 1.33 16 9 N -0.58 -15.02 3.01 -175.07 -0.53 -15.55 16 10 C 0.15 3.07 6.47 -3.93 -0.03 3.05 16 11 C -0.12 -2.00 5.66 -26.67 -0.15 -2.15 16 12 C -0.11 -1.65 4.39 -89.98 -0.40 -2.04 16 13 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 14 C 0.09 1.23 6.74 -3.02 -0.02 1.21 16 15 N -0.62 -11.15 3.32 -174.03 -0.58 -11.73 16 16 C 0.52 10.19 7.00 -10.99 -0.08 10.12 16 17 O -0.50 -12.18 14.98 5.56 0.08 -12.10 16 18 C 0.11 1.71 0.90 -91.59 -0.08 1.63 16 19 F -0.19 -3.02 15.17 2.25 0.03 -2.99 16 20 C -0.16 -2.35 4.57 -26.59 -0.12 -2.47 16 21 C 0.06 0.72 6.72 37.21 0.25 0.97 16 22 O -0.38 -4.67 10.77 -35.23 -0.38 -5.05 16 23 C 0.06 0.65 6.72 37.20 0.25 0.90 16 24 C -0.17 -2.02 5.13 -26.59 -0.14 -2.15 16 25 C 0.12 2.33 4.24 -69.60 -0.29 2.04 16 26 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 27 C 0.17 4.14 4.56 -5.60 -0.03 4.11 16 28 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 29 H 0.06 1.17 7.90 -51.93 -0.41 0.76 16 30 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 1.18 7.69 -51.93 -0.40 0.78 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 1.04 7.36 -51.93 -0.38 0.65 16 34 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.10 1.51 7.95 -51.93 -0.41 1.09 16 36 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 37 H 0.06 0.64 7.93 -51.93 -0.41 0.23 16 38 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.06 0.57 7.93 -51.92 -0.41 0.15 16 40 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.09 0.92 7.16 -51.93 -0.37 0.54 16 42 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.10 2.99 4.95 -51.93 -0.26 2.74 16 44 H 0.03 0.87 7.93 -51.93 -0.41 0.45 16 LS Contribution 342.93 15.07 5.17 5.17 Total: -1.00 -34.31 342.93 -8.50 -42.81 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -6.82 Total: -0.04 kcal Atomic # 6 Polarization: 9.13 SS G_CDS: -1.06 Total: 8.07 kcal Atomic # 7 Polarization: -53.68 SS G_CDS: -0.50 Total: -54.17 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: -0.30 Total: -17.14 kcal Atomic # 9 Polarization: -3.02 SS G_CDS: 0.03 Total: -2.99 kcal Atomic # 14 Polarization: 23.32 SS G_CDS: -5.03 Total: 18.29 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.31 -8.50 -42.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084393965.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.451 kcal (2) G-P(sol) polarization free energy of solvation -34.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds