Wall clock time and date at job start Fri Apr 10 2020 18:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86794 * 119.99943 * 2 1 4 4 H 1.48508 * 109.47052 * 270.00180 * 3 2 1 5 5 H 1.48496 * 109.47360 * 29.99902 * 3 2 1 6 6 H 1.48495 * 109.47195 * 150.00514 * 3 2 1 7 7 C 1.38807 * 119.99754 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99726 * 190.34656 * 7 2 1 9 9 N 1.36940 * 120.00474 * 10.34404 * 7 2 1 10 10 C 1.46610 * 119.89287 * 208.52880 * 9 7 2 11 11 C 1.53110 * 108.00751 * 237.30297 * 10 9 7 12 12 C 1.53007 * 109.44832 * 301.02569 * 11 10 9 13 13 H 1.09005 * 113.42294 * 275.03450 * 12 11 10 14 14 C 1.54645 * 110.83720 * 143.88563 * 12 11 10 15 15 N 1.47802 * 85.79620 * 270.23193 * 14 12 11 16 16 C 1.34774 * 135.01664 * 153.78528 * 15 14 12 17 17 O 1.21277 * 120.00041 * 184.74324 * 16 15 14 18 18 C 1.50700 * 119.99821 * 4.74508 * 16 15 14 19 19 F 1.39904 * 109.54404 * 306.03997 * 18 16 15 20 20 C 1.53176 * 109.54158 * 185.77460 * 18 16 15 21 21 C 1.53094 * 109.16227 * 183.15346 * 20 18 16 22 22 O 1.42904 * 109.41668 * 57.60622 * 21 20 18 23 23 C 1.42900 * 114.09673 * 298.84618 * 22 21 20 24 24 C 1.53088 * 109.41973 * 61.15578 * 23 22 21 25 25 C 1.46817 * 89.97087 * 333.80473 * 15 14 12 26 26 H 1.08995 * 110.91356 * 274.54428 * 25 15 14 27 27 C 1.45684 * 119.88626 * 28.50342 * 9 7 2 28 28 H 0.96999 * 119.99990 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.75938 * 356.92921 * 10 9 7 30 30 H 1.09004 * 109.75609 * 117.68138 * 10 9 7 31 31 H 1.08997 * 109.47167 * 61.02133 * 11 10 9 32 32 H 1.09003 * 109.46985 * 181.03157 * 11 10 9 33 33 H 1.09002 * 113.82060 * 24.45382 * 14 12 11 34 34 H 1.08998 * 113.82424 * 156.01078 * 14 12 11 35 35 H 1.08997 * 109.52538 * 303.05411 * 20 18 16 36 36 H 1.08999 * 109.52171 * 63.24666 * 20 18 16 37 37 H 1.08999 * 109.47981 * 297.62293 * 21 20 18 38 38 H 1.09005 * 109.49123 * 177.60050 * 21 20 18 39 39 H 1.09008 * 109.47615 * 301.17224 * 23 22 21 40 40 H 1.09003 * 109.48806 * 181.14773 * 23 22 21 41 41 H 1.08998 * 109.52580 * 182.48843 * 24 23 22 42 42 H 1.08998 * 109.51957 * 62.29479 * 24 23 22 43 43 H 1.08995 * 108.71900 * 19.78749 * 27 9 7 44 44 H 1.09000 * 108.71511 * 261.75833 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4002 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.6999 7 6 2.0102 -1.2021 -0.0005 8 1 3.0771 -1.2098 0.1674 9 7 1.3423 -2.3784 -0.2140 10 6 1.8507 -3.6236 0.3693 11 6 2.0856 -4.6188 -0.7703 12 6 0.7716 -4.8578 -1.5169 13 1 0.1464 -5.6244 -1.0591 14 6 1.0247 -5.0390 -3.0317 15 7 0.8617 -3.5729 -3.1238 16 6 1.3030 -2.6155 -3.9635 17 8 1.0658 -1.4490 -3.7314 18 6 2.0911 -2.9946 -5.1907 19 9 3.1819 -3.7883 -4.8199 20 6 2.5917 -1.7269 -5.8899 21 6 3.3232 -2.1183 -7.1766 22 8 2.4417 -2.8682 -8.0149 23 6 1.9788 -4.0879 -7.4316 24 6 1.1934 -3.7758 -6.1552 25 6 0.0201 -3.5917 -1.9209 26 1 -1.0180 -3.8047 -2.1757 27 6 0.1284 -2.3880 -1.0195 28 1 -0.4850 0.8400 0.0004 29 1 2.7891 -3.4308 0.8892 30 1 1.1185 -4.0294 1.0675 31 1 2.8267 -4.2137 -1.4594 32 1 2.4475 -5.5618 -0.3604 33 1 2.0297 -5.3862 -3.2717 34 1 0.2445 -5.6018 -3.5442 35 1 1.7442 -1.0863 -6.1333 36 1 3.2756 -1.1930 -5.2301 37 1 4.1940 -2.7255 -6.9294 38 1 3.6447 -1.2180 -7.7004 39 1 2.8321 -4.7209 -7.1877 40 1 1.3318 -4.6066 -8.1390 41 1 0.8772 -4.7070 -5.6851 42 1 0.3176 -3.1764 -6.4039 43 1 0.1093 -1.4880 -1.6341 44 1 -0.7338 -2.3716 -0.3529 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084393965.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:53 Heat of formation + Delta-G solvation = -86.431877 kcal Electronic energy + Delta-G solvation = -28581.043230 eV Core-core repulsion = 24641.947937 eV Total energy + Delta-G solvation = -3939.095293 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.11825 -41.85314 -40.15019 -39.04709 -37.06617 -34.29787 -33.96915 -32.40552 -31.96652 -30.69123 -28.71640 -26.80454 -25.74094 -24.91820 -24.38860 -22.74815 -21.98784 -20.93642 -19.66154 -18.95893 -18.00241 -17.62623 -17.42839 -17.20223 -17.03200 -16.47942 -16.33405 -16.07067 -15.67828 -15.53892 -15.28888 -14.84676 -14.74162 -14.32532 -14.14543 -13.81548 -13.66544 -13.63159 -13.52434 -13.43162 -13.17294 -12.78244 -12.74337 -12.59183 -12.37976 -12.25352 -11.99970 -11.83859 -11.77830 -11.64703 -11.52623 -11.21930 -10.86752 -10.64233 -10.25815 -9.61300 -8.65814 -7.87702 -5.35846 1.33156 1.39322 1.44138 1.45820 1.72540 2.45181 2.79932 3.02324 3.15957 3.25918 3.27566 3.43113 3.56723 3.70370 3.76034 3.92878 4.10305 4.12035 4.22900 4.37899 4.41391 4.46405 4.49260 4.53518 4.56803 4.66837 4.67851 4.71892 4.78915 4.85044 4.89621 4.90348 5.02932 5.05210 5.09688 5.28631 5.39559 5.53930 5.67306 5.79313 6.09125 6.38511 6.77887 7.07309 7.17188 7.92865 8.33032 9.16255 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.014719 B = 0.005729 C = 0.004623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.821409 B = 4886.098654 C = 6055.238220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.044 4.044 3 Si 0.956 3.044 4 H -0.299 1.299 5 H -0.287 1.287 6 H -0.263 1.263 7 C -0.258 4.258 8 H 0.056 0.944 9 N -0.602 5.602 10 C 0.138 3.862 11 C -0.107 4.107 12 C -0.098 4.098 13 H 0.131 0.869 14 C 0.107 3.893 15 N -0.627 5.627 16 C 0.505 3.495 17 O -0.566 6.566 18 C 0.119 3.881 19 F -0.194 7.194 20 C -0.163 4.163 21 C 0.070 3.930 22 O -0.392 6.392 23 C 0.062 3.938 24 C -0.164 4.164 25 C 0.109 3.891 26 H 0.097 0.903 27 C 0.180 3.820 28 H 0.245 0.755 29 H 0.049 0.951 30 H 0.030 0.970 31 H 0.036 0.964 32 H 0.100 0.900 33 H 0.094 0.906 34 H 0.125 0.875 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.119 0.881 39 H 0.069 0.931 40 H 0.131 0.869 41 H 0.111 0.889 42 H 0.087 0.913 43 H 0.051 0.949 44 H -0.002 1.002 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.001 -16.763 -13.800 21.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.239 4.239 3 Si 0.785 3.215 4 H -0.227 1.227 5 H -0.213 1.213 6 H -0.188 1.188 7 C -0.388 4.388 8 H 0.074 0.926 9 N -0.326 5.326 10 C 0.013 3.987 11 C -0.146 4.146 12 C -0.117 4.117 13 H 0.149 0.851 14 C -0.014 4.014 15 N -0.361 5.361 16 C 0.292 3.708 17 O -0.445 6.445 18 C 0.097 3.903 19 F -0.174 7.174 20 C -0.202 4.202 21 C -0.006 4.006 22 O -0.310 6.310 23 C -0.014 4.014 24 C -0.202 4.202 25 C 0.005 3.995 26 H 0.115 0.885 27 C 0.053 3.947 28 H 0.054 0.946 29 H 0.068 0.932 30 H 0.048 0.952 31 H 0.055 0.945 32 H 0.118 0.882 33 H 0.112 0.888 34 H 0.143 0.857 35 H 0.102 0.898 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.137 0.863 39 H 0.087 0.913 40 H 0.149 0.851 41 H 0.130 0.870 42 H 0.106 0.894 43 H 0.070 0.930 44 H 0.016 0.984 Dipole moment (debyes) X Y Z Total from point charges 2.825 -15.837 -13.958 21.298 hybrid contribution 0.251 1.764 0.779 1.944 sum 3.076 -14.073 -13.179 19.524 Atomic orbital electron populations 1.70150 1.06391 1.25201 1.56124 1.25731 0.96137 1.01109 1.00942 0.85427 0.78616 0.80533 0.76898 1.22709 1.21288 1.18781 1.19340 0.90671 0.85687 1.43151 0.92648 1.43679 1.28615 1.03885 1.56391 1.20995 0.97122 0.86403 0.94138 1.21747 0.95561 0.99731 0.97587 1.22867 0.97415 0.95818 0.95600 0.85113 1.23912 1.04017 0.78543 0.94922 1.50027 1.50048 1.09233 1.26787 1.20938 0.80993 0.84864 0.83985 1.90790 1.59467 1.20083 1.74139 1.21153 0.84383 0.92299 0.92448 1.92856 1.56190 1.75497 1.92895 1.22580 1.02877 0.95866 0.98844 1.22628 0.91413 0.97449 0.89157 1.87928 1.65405 1.35501 1.42209 1.22780 0.98604 0.86219 0.93778 1.22796 0.98762 1.02103 0.96498 1.22791 0.95398 0.97131 0.84208 0.88537 1.19712 0.87607 0.95798 0.91553 0.94582 0.93192 0.95175 0.94472 0.88175 0.88820 0.85749 0.89833 0.91100 0.91532 0.86278 0.91312 0.85076 0.87026 0.89415 0.93050 0.98409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.99 10.92 21.65 0.24 -59.76 16 2 C -0.04 -2.69 5.03 84.86 0.43 -2.27 16 3 Si 0.96 50.09 29.57 68.60 2.03 52.12 16 4 H -0.30 -16.15 7.11 99.48 0.71 -15.45 16 5 H -0.29 -14.67 7.11 99.48 0.71 -13.97 16 6 H -0.26 -12.89 7.11 99.48 0.71 -12.18 16 7 C -0.26 -15.48 9.51 84.03 0.80 -14.68 16 8 H 0.06 3.30 7.85 -2.91 -0.02 3.27 16 9 N -0.60 -31.93 3.01 -707.79 -2.13 -34.06 16 10 C 0.14 5.68 6.47 86.40 0.56 6.24 16 11 C -0.11 -3.30 5.66 30.63 0.17 -3.13 16 12 C -0.10 -2.58 4.39 -10.32 -0.05 -2.63 16 13 H 0.13 2.46 8.14 -2.38 -0.02 2.45 16 14 C 0.11 2.32 6.74 86.33 0.58 2.90 16 15 N -0.63 -21.62 3.32 -822.89 -2.73 -24.36 16 16 C 0.50 20.12 7.00 87.66 0.61 20.74 16 17 O -0.57 -29.63 14.98 -3.02 -0.05 -29.68 16 18 C 0.12 3.52 0.90 -11.42 -0.01 3.51 16 19 F -0.19 -5.64 15.17 44.97 0.68 -4.96 16 20 C -0.16 -4.87 4.57 30.68 0.14 -4.73 16 21 C 0.07 1.55 6.72 72.01 0.48 2.03 16 22 O -0.39 -8.61 10.77 -148.98 -1.60 -10.22 16 23 C 0.06 1.05 6.72 72.01 0.48 1.53 16 24 C -0.16 -3.39 5.13 30.68 0.16 -3.23 16 25 C 0.11 4.00 4.24 43.74 0.19 4.19 16 26 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 27 C 0.18 9.31 4.56 85.81 0.39 9.70 16 28 H 0.25 15.41 8.31 -92.71 -0.77 14.64 16 29 H 0.05 2.06 7.90 -2.39 -0.02 2.04 16 30 H 0.03 1.18 8.14 -2.39 -0.02 1.17 16 31 H 0.04 1.33 7.69 -2.39 -0.02 1.31 16 32 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.09 1.89 7.36 -2.39 -0.02 1.87 16 34 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.08 2.71 7.95 -2.39 -0.02 2.69 16 36 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 37 H 0.07 1.35 7.93 -2.39 -0.02 1.34 16 38 H 0.12 2.19 8.14 -2.38 -0.02 2.18 16 39 H 0.07 1.04 7.93 -2.38 -0.02 1.02 16 40 H 0.13 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.11 1.78 7.16 -2.39 -0.02 1.76 16 42 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.05 3.20 4.95 -2.39 -0.01 3.19 16 44 H 0.00 -0.11 7.93 -2.39 -0.02 -0.13 16 Total: -1.00 -83.17 342.93 2.36 -80.81 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: 0.99 Total: 9.92 kcal Atomic # 6 Polarization: 15.24 SS G_CDS: 4.94 Total: 20.18 kcal Atomic # 7 Polarization: -113.55 SS G_CDS: -4.63 Total: -118.18 kcal Atomic # 8 Polarization: -38.24 SS G_CDS: -1.65 Total: -39.89 kcal Atomic # 9 Polarization: -5.64 SS G_CDS: 0.68 Total: -4.96 kcal Atomic # 14 Polarization: 50.09 SS G_CDS: 2.03 Total: 52.12 kcal Total: -83.17 2.36 -80.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084393965.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.622 kcal (2) G-P(sol) polarization free energy of solvation -83.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds