Wall clock time and date at job start Fri Apr 10 2020 18:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86802 * 119.99869 * 2 1 4 4 H 1.48496 * 109.47538 * 274.87700 * 3 2 1 5 5 H 1.48497 * 109.47061 * 34.87893 * 3 2 1 6 6 H 1.48501 * 109.46988 * 154.87641 * 3 2 1 7 7 C 1.38811 * 120.00231 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00044 * 155.31750 * 7 2 1 9 9 N 1.36941 * 119.99884 * 335.32299 * 7 2 1 10 10 C 1.44318 * 116.35274 * 332.50046 * 9 7 2 11 11 C 1.51603 * 113.11145 * 187.25951 * 10 9 7 12 12 C 1.51701 * 111.34624 * 320.98477 * 11 10 9 13 13 H 1.08995 * 112.73002 * 293.97457 * 12 11 10 14 14 C 1.55969 * 106.00592 * 168.60655 * 12 11 10 15 15 N 1.47757 * 104.12037 * 285.68068 * 14 12 11 16 16 C 1.34784 * 125.81620 * 154.37807 * 15 14 12 17 17 O 1.21277 * 120.00076 * 359.71081 * 16 15 14 18 18 C 1.50694 * 119.99562 * 179.71310 * 16 15 14 19 19 F 1.39903 * 110.75636 * 57.02005 * 18 16 15 20 20 C 1.55310 * 110.84711 * 180.71004 * 18 16 15 21 21 C 1.54947 * 100.94264 * 152.32145 * 20 18 16 22 22 O 1.43651 * 105.13606 * 323.56105 * 21 20 18 23 23 C 1.43229 * 109.97134 * 24.42586 * 22 21 20 24 24 C 1.47611 * 108.36376 * 334.10969 * 15 14 12 25 25 C 1.53575 * 106.34360 * 0.63730 * 24 15 14 26 26 H 1.08996 * 108.70711 * 269.68004 * 25 24 15 27 27 C 1.43990 * 116.35498 * 152.47951 * 9 7 2 28 28 H 0.97004 * 119.99978 * 359.97438 * 1 2 3 29 29 H 1.09008 * 108.75638 * 308.19448 * 10 9 7 30 30 H 1.08996 * 108.75540 * 66.43970 * 10 9 7 31 31 H 1.08998 * 109.06290 * 81.45093 * 11 10 9 32 32 H 1.09001 * 109.06571 * 200.45023 * 11 10 9 33 33 H 1.09004 * 110.49648 * 167.01938 * 14 12 11 34 34 H 1.08999 * 110.50055 * 44.34543 * 14 12 11 35 35 H 1.08995 * 111.13173 * 270.24577 * 20 18 16 36 36 H 1.09005 * 111.12171 * 34.40730 * 20 18 16 37 37 H 1.09003 * 110.31039 * 204.64594 * 21 20 18 38 38 H 1.08994 * 110.39086 * 82.51958 * 21 20 18 39 39 H 1.09008 * 109.83225 * 238.77739 * 23 22 21 40 40 H 1.08999 * 109.90703 * 117.84754 * 23 22 21 41 41 H 1.09000 * 110.08072 * 119.85377 * 24 15 14 42 42 H 1.08995 * 110.08303 * 241.36301 * 24 15 14 43 43 H 1.09002 * 108.16106 * 60.77986 * 27 9 7 44 44 H 1.09000 * 107.99853 * 304.10165 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3946 2.1060 -1.3949 5 1 1.5029 2.6207 0.8006 6 1 3.5954 1.4126 0.5944 7 6 2.0102 -1.2021 -0.0005 8 1 3.0163 -1.2446 -0.3912 9 7 1.4194 -2.3341 0.4941 10 6 0.4108 -2.1397 1.5079 11 6 -0.0685 -3.4378 2.1271 12 6 -0.1920 -4.5339 1.0857 13 1 -0.9714 -4.3312 0.3513 14 6 -0.3984 -5.8604 1.8798 15 7 0.9380 -6.1601 2.4344 16 6 1.1874 -6.8854 3.5427 17 8 0.2683 -7.3525 4.1814 18 6 2.6084 -7.1160 3.9882 19 9 3.2692 -5.8990 4.1873 20 6 2.6505 -7.9891 5.2719 21 6 4.0340 -8.6699 5.1194 22 8 4.1796 -8.9121 3.7110 23 6 3.3680 -7.9934 2.9701 24 6 1.9535 -5.5353 1.5641 25 6 1.1823 -4.8167 0.4472 26 1 1.0462 -5.5081 -0.3843 27 6 1.8737 -3.5849 -0.0559 28 1 -0.4850 0.8401 0.0004 29 1 0.8219 -1.5069 2.2945 30 1 -0.4428 -1.6309 1.0600 31 1 0.6418 -3.7508 2.8923 32 1 -1.0413 -3.2733 2.5907 33 1 -0.7224 -6.6586 1.2119 34 1 -1.1214 -5.7161 2.6827 35 1 2.6135 -7.3710 6.1689 36 1 1.8477 -8.7265 5.2719 37 1 4.0553 -9.6108 5.6693 38 1 4.8241 -8.0077 5.4732 39 1 2.6572 -8.5428 2.3527 40 1 3.9983 -7.3666 2.3394 41 1 2.5434 -4.8171 2.1335 42 1 2.6036 -6.2999 1.1390 43 1 2.9385 -3.6824 0.1560 44 1 1.7476 -3.5427 -1.1378 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088080197.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:08 Heat of formation + Delta-G solvation = -88.425704 kcal Electronic energy + Delta-G solvation = -27850.925859 eV Core-core repulsion = 23911.744107 eV Total energy + Delta-G solvation = -3939.181752 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -48.19370 -40.61984 -39.39646 -38.24049 -35.73717 -32.83310 -32.12316 -31.62591 -30.52036 -29.68521 -27.86505 -25.83836 -24.31221 -23.28583 -22.59434 -21.94857 -21.37329 -19.72031 -17.99956 -17.84682 -17.25099 -17.12559 -16.46522 -15.93564 -15.57371 -15.35972 -15.06734 -14.91168 -14.47713 -14.19661 -13.95105 -13.84554 -13.45174 -13.30106 -13.04579 -12.84854 -12.76019 -12.42121 -12.28993 -12.08944 -11.93287 -11.80467 -11.31548 -11.20971 -11.15426 -10.76249 -10.62270 -10.32383 -10.24890 -10.09540 -9.96195 -9.76613 -9.68353 -9.59591 -8.74432 -8.48488 -6.63227 -5.64710 -3.29624 2.17611 2.61845 3.31747 3.36439 3.44642 3.48545 3.56980 3.92460 4.09917 4.42403 4.47814 4.57443 4.65823 4.77218 4.79406 5.00340 5.16527 5.25710 5.30786 5.31745 5.35173 5.42762 5.47414 5.52420 5.63375 5.66231 5.74175 5.85366 5.89874 6.06211 6.14536 6.27023 6.43370 6.50468 6.54175 6.64632 6.74494 6.80752 7.27360 7.31593 7.78485 7.79804 7.90701 8.51405 9.26985 9.96554 10.25986 11.21326 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.022304 B = 0.003776 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.059015 B = 7412.737464 C = 7903.252695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.007 3.993 3 Si 0.897 3.103 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.270 4.270 8 H 0.065 0.935 9 N -0.585 5.585 10 C 0.156 3.844 11 C -0.123 4.123 12 C -0.080 4.080 13 H 0.105 0.895 14 C 0.104 3.896 15 N -0.601 5.601 16 C 0.525 3.475 17 O -0.526 6.526 18 C 0.072 3.928 19 F -0.175 7.175 20 C -0.158 4.158 21 C 0.049 3.951 22 O -0.372 6.372 23 C 0.041 3.959 24 C 0.099 3.901 25 C -0.097 4.097 26 H 0.076 0.924 27 C 0.175 3.825 28 H 0.253 0.747 29 H 0.017 0.983 30 H 0.082 0.918 31 H 0.047 0.953 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.102 0.898 36 H 0.111 0.889 37 H 0.097 0.903 38 H 0.070 0.930 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.084 0.916 42 H 0.068 0.932 43 H 0.015 0.985 44 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.529 -16.437 6.543 18.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.193 4.193 3 Si 0.727 3.273 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.399 4.399 8 H 0.083 0.917 9 N -0.310 5.310 10 C 0.031 3.969 11 C -0.161 4.161 12 C -0.100 4.100 13 H 0.123 0.877 14 C -0.017 4.017 15 N -0.334 5.334 16 C 0.310 3.690 17 O -0.403 6.403 18 C 0.050 3.950 19 F -0.156 7.156 20 C -0.196 4.196 21 C -0.027 4.027 22 O -0.291 6.291 23 C -0.036 4.036 24 C -0.023 4.023 25 C -0.116 4.116 26 H 0.094 0.906 27 C 0.049 3.951 28 H 0.063 0.937 29 H 0.035 0.965 30 H 0.099 0.901 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.121 0.879 36 H 0.129 0.871 37 H 0.115 0.885 38 H 0.088 0.912 39 H 0.108 0.892 40 H 0.112 0.888 41 H 0.102 0.898 42 H 0.087 0.913 43 H 0.032 0.968 44 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 3.062 -16.788 6.895 18.405 hybrid contribution 0.416 1.304 0.119 1.374 sum 3.477 -15.484 7.014 17.351 Atomic orbital electron populations 1.69988 1.05522 1.25382 1.52307 1.24955 0.94944 0.98518 1.00842 0.86368 0.79573 0.83790 0.77609 1.21464 1.21533 1.20411 1.19112 0.96120 0.86583 1.38126 0.91710 1.42663 1.45249 1.00992 1.42067 1.20249 0.94705 0.92004 0.89950 1.21416 1.00587 0.96888 0.97215 1.22041 0.97245 0.93234 0.97439 0.87732 1.22789 0.83910 0.97376 0.97649 1.48697 1.09730 1.50167 1.24795 1.19817 0.89869 0.79155 0.80202 1.90724 1.45186 1.50184 1.54215 1.22590 0.90387 0.83185 0.98856 1.92972 1.81501 1.45083 1.96005 1.23734 0.99638 0.99777 0.96490 1.23511 0.95596 1.01220 0.82353 1.88447 1.67002 1.56278 1.17409 1.23748 0.94551 0.91677 0.93650 1.22457 0.91101 0.96748 0.92009 1.21508 0.95539 0.98226 0.96365 0.90557 1.19352 0.95369 0.84493 0.95907 0.93699 0.96523 0.90107 0.93376 0.92403 0.91283 0.90125 0.87904 0.87097 0.88491 0.91173 0.89196 0.88792 0.89808 0.91337 0.96752 0.95647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.09 10.92 55.49 0.61 -24.49 16 2 C 0.01 0.20 4.94 -17.43 -0.09 0.11 16 3 Si 0.90 21.41 29.62 -169.99 -5.03 16.38 16 4 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.27 -7.26 9.26 -15.06 -0.14 -7.40 16 8 H 0.07 1.72 7.94 -52.48 -0.42 1.31 16 9 N -0.59 -14.09 3.22 -179.59 -0.58 -14.67 16 10 C 0.16 3.63 5.12 -5.91 -0.03 3.60 16 11 C -0.12 -2.26 4.90 -28.10 -0.14 -2.40 16 12 C -0.08 -1.26 3.71 -89.09 -0.33 -1.59 16 13 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 14 C 0.10 1.43 6.21 -1.77 -0.01 1.42 16 15 N -0.60 -8.46 2.79 -169.56 -0.47 -8.93 16 16 C 0.52 7.58 6.84 -10.99 -0.08 7.50 16 17 O -0.53 -8.79 15.96 5.56 0.09 -8.70 16 18 C 0.07 0.88 1.04 -89.83 -0.09 0.79 16 19 F -0.18 -2.44 15.80 2.25 0.04 -2.40 16 20 C -0.16 -1.60 6.09 -24.48 -0.15 -1.75 16 21 C 0.05 0.44 7.78 38.19 0.30 0.73 16 22 O -0.37 -4.18 11.36 -35.23 -0.40 -4.58 16 23 C 0.04 0.44 6.06 37.88 0.23 0.67 16 24 C 0.10 1.36 4.63 -3.13 -0.01 1.35 16 25 C -0.10 -1.48 2.72 -91.23 -0.25 -1.73 16 26 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 27 C 0.18 3.43 5.67 -6.89 -0.04 3.39 16 28 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 29 H 0.02 0.42 8.12 -51.92 -0.42 0.00 16 30 H 0.08 2.14 5.75 -51.93 -0.30 1.84 16 31 H 0.05 0.90 6.76 -51.93 -0.35 0.55 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.08 1.16 7.90 -51.93 -0.41 0.75 16 35 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.11 1.14 7.38 -51.93 -0.38 0.76 16 37 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.09 0.90 7.81 -51.92 -0.41 0.49 16 40 H 0.09 0.94 7.41 -51.93 -0.38 0.56 16 41 H 0.08 1.32 7.07 -51.93 -0.37 0.95 16 42 H 0.07 0.77 6.67 -51.93 -0.35 0.42 16 43 H 0.01 0.28 7.77 -51.93 -0.40 -0.12 16 44 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 339.99 15.07 5.12 5.12 Total: -1.00 -30.71 339.99 -8.17 -38.88 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -6.71 Total: -1.30 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: -0.83 Total: 4.70 kcal Atomic # 7 Polarization: -47.64 SS G_CDS: -0.45 Total: -48.09 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: -0.31 Total: -13.29 kcal Atomic # 9 Polarization: -2.44 SS G_CDS: 0.04 Total: -2.40 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.38 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.71 -8.17 -38.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088080197.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.544 kcal (2) G-P(sol) polarization free energy of solvation -30.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds