Wall clock time and date at job start Fri Apr 10 2020 18:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86802 * 119.99869 * 2 1 4 4 H 1.48496 * 109.47538 * 274.87700 * 3 2 1 5 5 H 1.48497 * 109.47061 * 34.87893 * 3 2 1 6 6 H 1.48501 * 109.46988 * 154.87641 * 3 2 1 7 7 C 1.38811 * 120.00231 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00044 * 155.31750 * 7 2 1 9 9 N 1.36941 * 119.99884 * 335.32299 * 7 2 1 10 10 C 1.44318 * 116.35274 * 332.50046 * 9 7 2 11 11 C 1.51603 * 113.11145 * 187.25951 * 10 9 7 12 12 C 1.51701 * 111.34624 * 320.98477 * 11 10 9 13 13 H 1.08995 * 112.73002 * 293.97457 * 12 11 10 14 14 C 1.55969 * 106.00592 * 168.60655 * 12 11 10 15 15 N 1.47757 * 104.12037 * 285.68068 * 14 12 11 16 16 C 1.34784 * 125.81620 * 154.37807 * 15 14 12 17 17 O 1.21277 * 120.00076 * 359.71081 * 16 15 14 18 18 C 1.50694 * 119.99562 * 179.71310 * 16 15 14 19 19 F 1.39903 * 110.75636 * 57.02005 * 18 16 15 20 20 C 1.55310 * 110.84711 * 180.71004 * 18 16 15 21 21 C 1.54947 * 100.94264 * 152.32145 * 20 18 16 22 22 O 1.43651 * 105.13606 * 323.56105 * 21 20 18 23 23 C 1.43229 * 109.97134 * 24.42586 * 22 21 20 24 24 C 1.47611 * 108.36376 * 334.10969 * 15 14 12 25 25 C 1.53575 * 106.34360 * 0.63730 * 24 15 14 26 26 H 1.08996 * 108.70711 * 269.68004 * 25 24 15 27 27 C 1.43990 * 116.35498 * 152.47951 * 9 7 2 28 28 H 0.97004 * 119.99978 * 359.97438 * 1 2 3 29 29 H 1.09008 * 108.75638 * 308.19448 * 10 9 7 30 30 H 1.08996 * 108.75540 * 66.43970 * 10 9 7 31 31 H 1.08998 * 109.06290 * 81.45093 * 11 10 9 32 32 H 1.09001 * 109.06571 * 200.45023 * 11 10 9 33 33 H 1.09004 * 110.49648 * 167.01938 * 14 12 11 34 34 H 1.08999 * 110.50055 * 44.34543 * 14 12 11 35 35 H 1.08995 * 111.13173 * 270.24577 * 20 18 16 36 36 H 1.09005 * 111.12171 * 34.40730 * 20 18 16 37 37 H 1.09003 * 110.31039 * 204.64594 * 21 20 18 38 38 H 1.08994 * 110.39086 * 82.51958 * 21 20 18 39 39 H 1.09008 * 109.83225 * 238.77739 * 23 22 21 40 40 H 1.08999 * 109.90703 * 117.84754 * 23 22 21 41 41 H 1.09000 * 110.08072 * 119.85377 * 24 15 14 42 42 H 1.08995 * 110.08303 * 241.36301 * 24 15 14 43 43 H 1.09002 * 108.16106 * 60.77986 * 27 9 7 44 44 H 1.09000 * 107.99853 * 304.10165 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3946 2.1060 -1.3949 5 1 1.5029 2.6207 0.8006 6 1 3.5954 1.4126 0.5944 7 6 2.0102 -1.2021 -0.0005 8 1 3.0163 -1.2446 -0.3912 9 7 1.4194 -2.3341 0.4941 10 6 0.4108 -2.1397 1.5079 11 6 -0.0685 -3.4378 2.1271 12 6 -0.1920 -4.5339 1.0857 13 1 -0.9714 -4.3312 0.3513 14 6 -0.3984 -5.8604 1.8798 15 7 0.9380 -6.1601 2.4344 16 6 1.1874 -6.8854 3.5427 17 8 0.2683 -7.3525 4.1814 18 6 2.6084 -7.1160 3.9882 19 9 3.2692 -5.8990 4.1873 20 6 2.6505 -7.9891 5.2719 21 6 4.0340 -8.6699 5.1194 22 8 4.1796 -8.9121 3.7110 23 6 3.3680 -7.9934 2.9701 24 6 1.9535 -5.5353 1.5641 25 6 1.1823 -4.8167 0.4472 26 1 1.0462 -5.5081 -0.3843 27 6 1.8737 -3.5849 -0.0559 28 1 -0.4850 0.8401 0.0004 29 1 0.8219 -1.5069 2.2945 30 1 -0.4428 -1.6309 1.0600 31 1 0.6418 -3.7508 2.8923 32 1 -1.0413 -3.2733 2.5907 33 1 -0.7224 -6.6586 1.2119 34 1 -1.1214 -5.7161 2.6827 35 1 2.6135 -7.3710 6.1689 36 1 1.8477 -8.7265 5.2719 37 1 4.0553 -9.6108 5.6693 38 1 4.8241 -8.0077 5.4732 39 1 2.6572 -8.5428 2.3527 40 1 3.9983 -7.3666 2.3394 41 1 2.5434 -4.8171 2.1335 42 1 2.6036 -6.2999 1.1390 43 1 2.9385 -3.6824 0.1560 44 1 1.7476 -3.5427 -1.1378 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088080197.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:06 Heat of formation + Delta-G solvation = -107.722511 kcal Electronic energy + Delta-G solvation = -27851.762631 eV Core-core repulsion = 23911.744107 eV Total energy + Delta-G solvation = -3940.018524 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.164 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -49.20305 -41.79604 -40.41921 -39.35836 -37.36452 -34.37099 -33.33169 -32.89720 -32.12141 -30.65619 -29.18078 -27.32025 -25.80642 -24.43993 -23.65058 -23.46464 -22.60867 -20.75823 -19.50147 -18.93175 -18.85244 -18.11401 -17.56303 -17.14923 -16.86898 -16.51655 -16.26939 -15.99514 -15.83780 -15.67114 -15.41945 -15.10812 -14.88461 -14.55849 -14.22146 -14.10797 -14.01374 -13.80150 -13.46999 -13.22357 -13.01775 -12.93504 -12.85562 -12.66690 -12.54028 -12.24259 -12.08816 -12.06761 -11.85195 -11.53040 -11.32575 -11.22524 -11.07727 -10.72642 -10.53801 -9.85002 -8.65566 -7.69243 -5.39185 1.08053 1.44481 1.47945 1.56386 1.57674 2.50786 2.52789 2.65332 3.03282 3.16695 3.21964 3.42397 3.54988 3.60558 3.73108 3.81568 3.83444 4.08257 4.12356 4.23711 4.40029 4.42526 4.47553 4.53524 4.59811 4.63372 4.65986 4.71530 4.75787 4.86116 4.86300 4.93474 5.02970 5.03911 5.15364 5.24348 5.32479 5.40576 5.68681 5.69213 5.92834 6.18206 6.44655 6.67987 7.22204 8.05571 8.23890 9.12082 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.022304 B = 0.003776 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.059015 B = 7412.737464 C = 7903.252695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.041 4.041 3 Si 0.956 3.044 4 H -0.282 1.282 5 H -0.293 1.293 6 H -0.274 1.274 7 C -0.285 4.285 8 H 0.063 0.937 9 N -0.597 5.597 10 C 0.165 3.835 11 C -0.111 4.111 12 C -0.079 4.079 13 H 0.107 0.893 14 C 0.113 3.887 15 N -0.602 5.602 16 C 0.523 3.477 17 O -0.552 6.552 18 C 0.066 3.934 19 F -0.187 7.187 20 C -0.156 4.156 21 C 0.050 3.950 22 O -0.386 6.386 23 C 0.045 3.955 24 C 0.107 3.893 25 C -0.093 4.093 26 H 0.111 0.889 27 C 0.171 3.829 28 H 0.250 0.750 29 H -0.019 1.019 30 H 0.051 0.949 31 H 0.043 0.957 32 H 0.065 0.935 33 H 0.098 0.902 34 H 0.074 0.926 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.121 0.879 38 H 0.076 0.924 39 H 0.100 0.900 40 H 0.101 0.899 41 H 0.062 0.938 42 H 0.102 0.898 43 H 0.020 0.980 44 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.362 -18.490 6.435 20.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.239 4.239 3 Si 0.784 3.216 4 H -0.209 1.209 5 H -0.219 1.219 6 H -0.199 1.199 7 C -0.415 4.415 8 H 0.081 0.919 9 N -0.321 5.321 10 C 0.040 3.960 11 C -0.149 4.149 12 C -0.098 4.098 13 H 0.125 0.875 14 C -0.009 4.009 15 N -0.334 5.334 16 C 0.309 3.691 17 O -0.431 6.431 18 C 0.044 3.956 19 F -0.168 7.168 20 C -0.194 4.194 21 C -0.026 4.026 22 O -0.305 6.305 23 C -0.032 4.032 24 C -0.015 4.015 25 C -0.112 4.112 26 H 0.129 0.871 27 C 0.046 3.954 28 H 0.059 0.941 29 H -0.001 1.001 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.084 0.916 33 H 0.116 0.884 34 H 0.092 0.908 35 H 0.126 0.874 36 H 0.127 0.873 37 H 0.139 0.861 38 H 0.094 0.906 39 H 0.118 0.882 40 H 0.119 0.881 41 H 0.080 0.920 42 H 0.120 0.880 43 H 0.038 0.962 44 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 3.919 -18.858 6.776 20.418 hybrid contribution 0.178 1.963 0.162 1.978 sum 4.097 -16.895 6.938 18.718 Atomic orbital electron populations 1.70135 1.06675 1.25666 1.53527 1.25652 0.95672 1.01306 1.01223 0.85444 0.78407 0.80160 0.77567 1.20881 1.21900 1.19939 1.19431 0.96313 0.88089 1.37689 0.91885 1.42888 1.45012 1.02045 1.42175 1.19970 0.93248 0.93998 0.88817 1.21251 1.00505 0.95449 0.97675 1.21989 0.97774 0.93178 0.96908 0.87520 1.22732 0.83755 0.96809 0.97569 1.48746 1.09899 1.49898 1.24886 1.20164 0.90547 0.78634 0.79755 1.90711 1.46209 1.51293 1.54847 1.22739 0.89173 0.83079 1.00606 1.92949 1.81591 1.46072 1.96169 1.23766 1.00455 0.99456 0.95731 1.23670 0.94808 1.02536 0.81541 1.88428 1.67180 1.56418 1.18506 1.23767 0.94669 0.91529 0.93277 1.22377 0.90888 0.97134 0.91111 1.21445 0.94848 0.96879 0.98067 0.87124 1.19473 0.96019 0.84547 0.95391 0.94092 1.00051 0.93198 0.93804 0.91595 0.88423 0.90771 0.87437 0.87257 0.86075 0.90574 0.88197 0.88072 0.91992 0.87979 0.96220 0.96429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.13 10.92 21.65 0.24 -52.90 16 2 C -0.04 -2.29 4.94 84.86 0.42 -1.87 16 3 Si 0.96 44.73 29.62 68.60 2.03 46.76 16 4 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 5 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 6 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 7 C -0.28 -15.58 9.26 84.03 0.78 -14.80 16 8 H 0.06 3.39 7.94 -2.91 -0.02 3.37 16 9 N -0.60 -29.16 3.22 -722.09 -2.33 -31.48 16 10 C 0.17 7.95 5.12 86.33 0.44 8.39 16 11 C -0.11 -4.07 4.90 29.71 0.15 -3.92 16 12 C -0.08 -2.34 3.71 -9.80 -0.04 -2.38 16 13 H 0.11 3.16 8.14 -2.39 -0.02 3.14 16 14 C 0.11 2.80 6.21 87.17 0.54 3.34 16 15 N -0.60 -15.50 2.79 -808.77 -2.26 -17.76 16 16 C 0.52 14.12 6.84 87.65 0.60 14.72 16 17 O -0.55 -17.60 15.96 -3.02 -0.05 -17.64 16 18 C 0.07 1.49 1.04 -10.28 -0.01 1.48 16 19 F -0.19 -4.98 15.80 44.97 0.71 -4.27 16 20 C -0.16 -2.87 6.09 32.05 0.20 -2.67 16 21 C 0.05 0.76 7.78 72.65 0.56 1.33 16 22 O -0.39 -7.67 11.36 -148.98 -1.69 -9.36 16 23 C 0.04 0.85 6.06 72.45 0.44 1.28 16 24 C 0.11 2.66 4.63 86.36 0.40 3.06 16 25 C -0.09 -2.63 2.72 -11.19 -0.03 -2.66 16 26 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 27 C 0.17 6.55 5.67 85.86 0.49 7.04 16 28 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 29 H -0.02 -1.00 8.12 -2.38 -0.02 -1.02 16 30 H 0.05 2.76 5.75 -2.39 -0.01 2.75 16 31 H 0.04 1.64 6.76 -2.39 -0.02 1.62 16 32 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.10 1.95 8.14 -2.38 -0.02 1.93 16 34 H 0.07 1.98 7.90 -2.39 -0.02 1.96 16 35 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.11 2.06 7.38 -2.38 -0.02 2.04 16 37 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.10 1.68 7.81 -2.38 -0.02 1.66 16 40 H 0.10 1.74 7.41 -2.39 -0.02 1.72 16 41 H 0.06 1.85 7.07 -2.39 -0.02 1.84 16 42 H 0.10 1.89 6.67 -2.39 -0.02 1.88 16 43 H 0.02 0.75 7.77 -2.39 -0.02 0.73 16 44 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -67.56 339.99 2.59 -64.97 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: 1.00 Total: 9.36 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: 4.94 Total: 12.33 kcal Atomic # 7 Polarization: -97.79 SS G_CDS: -4.35 Total: -102.14 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: -1.74 Total: -27.01 kcal Atomic # 9 Polarization: -4.98 SS G_CDS: 0.71 Total: -4.27 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -67.56 2.59 -64.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088080197.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.749 kcal (2) G-P(sol) polarization free energy of solvation -67.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds