Wall clock time and date at job start Fri Apr 10 2020 18:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53781 * 111.86150 * 2 1 4 4 N 1.47215 * 106.37711 * 140.60983 * 3 2 1 5 5 C 1.36933 * 126.70114 * 148.70442 * 4 3 2 6 6 H 1.07996 * 120.00548 * 0.02562 * 5 4 3 7 7 C 1.38817 * 119.99548 * 180.02562 * 5 4 3 8 8 N 1.31615 * 120.00556 * 359.97438 * 7 5 4 9 9 Si 1.86812 * 119.99554 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.46788 * 89.99718 * 9 7 5 11 11 H 1.48497 * 109.46845 * 209.99904 * 9 7 5 12 12 H 1.48498 * 109.46960 * 329.99629 * 9 7 5 13 13 C 1.46515 * 106.96970 * 329.55754 * 4 3 2 14 14 C 1.53778 * 106.73415 * 29.89723 * 13 4 3 15 15 H 1.09002 * 111.86081 * 220.79843 * 14 13 4 16 16 C 1.53782 * 110.15373 * 95.72870 * 14 13 4 17 17 N 1.46519 * 106.72904 * 229.55858 * 16 14 13 18 18 C 1.34779 * 126.32195 * 210.69229 * 17 16 14 19 19 O 1.21277 * 119.99766 * 179.05608 * 18 17 16 20 20 C 1.50703 * 119.99626 * 359.05720 * 18 17 16 21 21 F 1.39897 * 110.75472 * 54.30007 * 20 18 17 22 22 C 1.55312 * 110.84279 * 177.77049 * 20 18 17 23 23 C 1.55210 * 100.82333 * 152.17461 * 22 20 18 24 24 O 1.43646 * 105.26074 * 323.81809 * 23 22 20 25 25 C 1.43240 * 109.97178 * 24.28417 * 24 23 22 26 26 C 1.47216 * 106.97268 * 29.89955 * 17 16 14 27 27 H 1.09002 * 109.47340 * 302.06654 * 1 2 3 28 28 H 1.09005 * 109.46911 * 62.05994 * 1 2 3 29 29 H 1.08997 * 109.47196 * 182.06144 * 1 2 3 30 30 H 1.08995 * 110.07261 * 259.83986 * 3 2 1 31 31 H 1.09004 * 110.07206 * 21.33135 * 3 2 1 32 32 H 0.96995 * 120.00098 * 179.97438 * 8 7 5 33 33 H 1.09008 * 108.72601 * 271.18935 * 13 4 3 34 34 H 1.08997 * 111.06970 * 149.89606 * 13 4 3 35 35 H 1.08999 * 110.07748 * 347.37943 * 16 14 13 36 36 H 1.08994 * 110.07724 * 108.92664 * 16 14 13 37 37 H 1.08995 * 111.12366 * 270.23917 * 22 20 18 38 38 H 1.09005 * 111.12398 * 34.40511 * 22 20 18 39 39 H 1.08995 * 110.37026 * 204.79589 * 23 22 20 40 40 H 1.09003 * 110.20580 * 82.75274 * 23 22 20 41 41 H 1.09004 * 109.82366 * 238.77498 * 25 24 23 42 42 H 1.08998 * 109.90283 * 117.84630 * 25 24 23 43 43 H 1.08992 * 110.07456 * 210.32932 * 26 17 16 44 44 H 1.09003 * 110.12183 * 88.80373 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1026 1.4272 0.0000 4 7 3.2703 1.4060 0.8963 5 6 4.4007 2.1709 0.7860 6 1 4.4966 2.8791 -0.0237 7 6 5.4233 2.0360 1.7149 8 7 5.3063 1.1733 2.7020 9 14 6.9652 3.0800 1.5648 10 1 6.7817 4.3452 2.3202 11 1 8.1234 2.3351 2.1205 12 1 7.2160 3.3895 0.1343 13 6 3.0040 0.3938 1.9216 14 6 2.1091 -0.6729 1.2688 15 1 1.3241 -1.0128 1.9444 16 6 2.9666 -1.8409 0.7537 17 7 2.5536 -2.0890 -0.6301 18 6 2.5691 -3.2767 -1.2671 19 8 2.1837 -3.3545 -2.4143 20 6 3.0653 -4.5079 -0.5536 21 9 2.3782 -4.6937 0.6507 22 6 2.9385 -5.7615 -1.4615 23 6 4.0862 -6.6439 -0.9020 24 8 5.1362 -5.7257 -0.5588 25 6 4.5877 -4.4259 -0.3106 26 6 2.1025 -0.8007 -1.1815 27 1 -0.3634 0.5456 0.8709 28 1 -0.3633 0.4815 -0.9079 29 1 -0.3633 -1.0270 0.0370 30 1 2.4095 1.7072 -1.0077 31 1 1.3568 2.1295 0.3724 32 1 6.0211 1.0788 3.3508 33 1 2.4784 0.8662 2.7516 34 1 3.9302 -0.0597 2.2744 35 1 4.0204 -1.5625 0.7597 36 1 2.8085 -2.7231 1.3739 37 1 1.9695 -6.2435 -1.3325 38 1 3.1133 -5.5085 -2.5073 39 1 4.4305 -7.3454 -1.6620 40 1 3.7496 -7.1822 -0.0159 41 1 5.0324 -3.7007 -0.9921 42 1 4.7822 -4.1318 0.7208 43 1 1.3292 -0.9651 -1.9318 44 1 2.9440 -0.2664 -1.6227 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091951176.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:35 Heat of formation + Delta-G solvation = -89.174500 kcal Electronic energy + Delta-G solvation = -28056.001784 eV Core-core repulsion = 24116.787561 eV Total energy + Delta-G solvation = -3939.214222 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.164 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.16136 -40.43421 -39.30288 -38.13557 -35.14297 -33.04463 -31.98244 -30.91925 -30.13372 -29.62866 -26.66909 -25.89343 -25.28366 -23.66233 -22.77963 -21.99042 -20.19415 -19.61956 -18.80718 -17.61448 -17.01702 -16.84244 -16.49305 -15.69646 -15.41305 -15.30689 -14.90833 -14.71912 -14.38900 -14.19777 -13.69661 -13.67667 -13.37810 -13.26842 -12.83750 -12.63403 -12.45497 -12.15087 -11.96641 -11.84697 -11.81489 -11.74431 -11.38405 -11.08343 -10.98712 -10.87767 -10.79332 -10.23486 -10.15791 -10.02542 -9.90742 -9.85208 -9.76073 -9.60992 -8.77048 -8.52380 -6.96296 -5.73171 -3.17774 2.33501 2.82214 3.35182 3.40925 3.42215 3.48079 3.71976 4.05248 4.29793 4.41408 4.54476 4.66230 4.84410 4.92739 4.95517 5.12217 5.35316 5.40086 5.41339 5.48876 5.51774 5.54983 5.59098 5.63316 5.73419 5.76528 5.85519 5.95579 6.08703 6.15944 6.25236 6.28565 6.30990 6.41883 6.58709 6.63968 6.70543 6.80913 7.32868 7.53528 7.57962 7.73750 7.96671 8.29330 9.13778 9.73232 10.39410 11.28301 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.014926 B = 0.004787 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.444857 B = 5848.343241 C = 6935.551916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.089 4.089 3 C 0.146 3.854 4 N -0.595 5.595 5 C -0.220 4.220 6 H 0.079 0.921 7 C -0.009 4.009 8 N -0.922 5.922 9 Si 0.915 3.085 10 H -0.289 1.289 11 H -0.290 1.290 12 H -0.281 1.281 13 C 0.145 3.855 14 C -0.114 4.114 15 H 0.079 0.921 16 C 0.098 3.902 17 N -0.595 5.595 18 C 0.523 3.477 19 O -0.532 6.532 20 C 0.073 3.927 21 F -0.179 7.179 22 C -0.158 4.158 23 C 0.049 3.951 24 O -0.372 6.372 25 C 0.042 3.958 26 C 0.124 3.876 27 H 0.060 0.940 28 H 0.054 0.946 29 H 0.050 0.950 30 H 0.044 0.956 31 H 0.024 0.976 32 H 0.254 0.746 33 H 0.010 0.990 34 H 0.127 0.873 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.101 0.899 38 H 0.111 0.889 39 H 0.096 0.904 40 H 0.068 0.932 41 H 0.093 0.907 42 H 0.096 0.904 43 H 0.073 0.927 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.491 -11.960 -4.867 14.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.091 4.091 3 C 0.019 3.981 4 N -0.318 5.318 5 C -0.349 4.349 6 H 0.096 0.904 7 C -0.205 4.205 8 N -0.570 5.570 9 Si 0.745 3.255 10 H -0.216 1.216 11 H -0.216 1.216 12 H -0.207 1.207 13 C 0.019 3.981 14 C -0.135 4.135 15 H 0.097 0.903 16 C -0.024 4.024 17 N -0.326 5.326 18 C 0.308 3.692 19 O -0.410 6.410 20 C 0.051 3.949 21 F -0.159 7.159 22 C -0.196 4.196 23 C -0.027 4.027 24 O -0.291 6.291 25 C -0.036 4.036 26 C 0.002 3.998 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.042 0.958 32 H 0.065 0.935 33 H 0.028 0.972 34 H 0.144 0.856 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.119 0.881 38 H 0.130 0.870 39 H 0.114 0.886 40 H 0.086 0.914 41 H 0.111 0.889 42 H 0.114 0.886 43 H 0.092 0.908 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.246 -12.052 -5.365 14.596 hybrid contribution 0.368 0.641 0.204 0.767 sum -5.878 -11.411 -5.160 13.835 Atomic orbital electron populations 1.21679 0.93647 1.01178 1.01770 1.22198 0.95047 0.97464 0.94437 1.21368 0.90151 0.91792 0.94795 1.44346 1.15278 1.43111 1.29113 1.19092 0.92309 1.14220 1.09230 0.90351 1.24754 0.98774 0.99710 0.97222 1.69598 1.33083 1.37973 1.16395 0.86066 0.82486 0.79423 0.77498 1.21573 1.21598 1.20705 1.21835 0.99146 0.87530 0.89602 1.23061 0.97979 0.96098 0.96315 0.90257 1.22436 1.00362 0.99007 0.80588 1.48460 1.61903 1.07318 1.14933 1.19786 0.79505 0.83126 0.86747 1.90706 1.48036 1.85057 1.17178 1.22612 0.93751 0.95977 0.82545 1.92907 1.80982 1.96022 1.46032 1.23775 1.01492 0.93055 1.01256 1.23531 0.86710 0.92535 0.99917 1.88459 1.31435 1.18645 1.90534 1.23743 0.88891 0.86992 1.03944 1.22178 0.99353 0.82201 0.96094 0.92144 0.92677 0.93106 0.93782 0.95791 0.93543 0.97220 0.85601 0.89908 0.90351 0.88064 0.87046 0.88597 0.91365 0.88916 0.88579 0.90817 0.90516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.73 8.43 37.16 0.31 -1.41 16 2 C -0.09 -1.48 1.09 -152.72 -0.17 -1.64 16 3 C 0.15 2.83 6.25 -3.25 -0.02 2.81 16 4 N -0.59 -14.13 3.37 -171.69 -0.58 -14.71 16 5 C -0.22 -5.78 10.33 -15.06 -0.16 -5.94 16 6 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 7 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 8 N -0.92 -25.22 10.06 55.49 0.56 -24.66 16 9 Si 0.91 21.25 29.55 -169.99 -5.02 16.23 16 10 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 13 C 0.14 3.23 5.49 -3.63 -0.02 3.21 16 14 C -0.11 -2.01 3.64 -88.83 -0.32 -2.33 16 15 H 0.08 1.29 7.88 -51.93 -0.41 0.88 16 16 C 0.10 1.64 5.74 -3.62 -0.02 1.62 16 17 N -0.60 -9.78 3.30 -172.14 -0.57 -10.35 16 18 C 0.52 8.41 6.85 -10.98 -0.08 8.34 16 19 O -0.53 -9.62 15.91 5.56 0.09 -9.53 16 20 C 0.07 0.99 1.02 -89.82 -0.09 0.89 16 21 F -0.18 -2.50 15.06 2.25 0.03 -2.46 16 22 C -0.16 -1.74 6.13 -24.34 -0.15 -1.89 16 23 C 0.05 0.49 7.78 38.33 0.30 0.79 16 24 O -0.37 -4.90 11.36 -35.23 -0.40 -5.30 16 25 C 0.04 0.55 6.67 37.88 0.25 0.81 16 26 C 0.12 2.05 6.16 -3.24 -0.02 2.03 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.04 0.83 7.56 -51.93 -0.39 0.44 16 31 H 0.02 0.47 7.87 -51.93 -0.41 0.06 16 32 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16 33 H 0.01 0.24 8.14 -51.92 -0.42 -0.19 16 34 H 0.13 3.13 4.92 -51.93 -0.26 2.88 16 35 H 0.08 1.55 7.46 -51.93 -0.39 1.16 16 36 H 0.08 1.19 6.08 -51.93 -0.32 0.88 16 37 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.11 1.28 7.34 -51.93 -0.38 0.90 16 39 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.09 1.26 7.81 -51.93 -0.41 0.86 16 42 H 0.10 1.25 8.11 -51.93 -0.42 0.83 16 43 H 0.07 1.17 7.60 -51.93 -0.39 0.78 16 44 H 0.08 1.38 7.46 -51.93 -0.39 0.99 16 LS Contribution 344.23 15.07 5.19 5.19 Total: -1.00 -29.32 344.23 -7.64 -36.96 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -6.66 Total: 1.71 kcal Atomic # 6 Polarization: 7.21 SS G_CDS: -0.27 Total: 6.94 kcal Atomic # 7 Polarization: -49.13 SS G_CDS: -0.59 Total: -49.72 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: -0.31 Total: -14.83 kcal Atomic # 9 Polarization: -2.50 SS G_CDS: 0.03 Total: -2.46 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.32 -7.64 -36.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091951176.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.215 kcal (2) G-P(sol) polarization free energy of solvation -29.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds