Wall clock time and date at job start Fri Apr 10 2020 18:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.51101 * 2 1 4 4 N 1.46501 * 109.46985 * 304.99575 * 3 2 1 5 5 C 1.34780 * 120.00249 * 180.02562 * 4 3 2 6 6 O 1.21281 * 119.99338 * 0.02562 * 5 4 3 7 7 C 1.50695 * 120.00527 * 180.02562 * 5 4 3 8 8 H 1.08998 * 110.48761 * 317.30319 * 7 5 4 9 9 C 1.54104 * 110.54608 * 79.99628 * 7 5 4 10 10 N 1.47062 * 103.85908 * 118.59788 * 9 7 5 11 11 C 1.33942 * 109.18058 * 0.02562 * 10 9 7 12 12 O 1.21582 * 123.04338 * 180.02562 * 11 10 9 13 13 N 1.33949 * 113.91734 * 359.97438 * 11 10 9 14 14 C 1.53294 * 109.51046 * 120.09807 * 2 1 3 15 15 N 1.47154 * 108.38368 * 67.67348 * 14 2 1 16 16 C 1.36939 * 120.97899 * 230.55375 * 15 14 2 17 17 H 1.07997 * 120.00444 * 26.58357 * 16 15 14 18 18 C 1.38820 * 119.99879 * 206.58274 * 16 15 14 19 19 N 1.31619 * 119.99591 * 17.03053 * 18 16 15 20 20 Si 1.86797 * 119.99769 * 197.03472 * 18 16 15 21 21 H 1.48503 * 109.47198 * 94.15581 * 20 18 16 22 22 H 1.48504 * 109.46902 * 214.14729 * 20 18 16 23 23 H 1.48497 * 109.47633 * 334.14843 * 20 18 16 24 24 C 1.47147 * 118.03885 * 50.53692 * 15 14 2 25 25 C 1.53303 * 108.38087 * 309.46228 * 24 15 14 26 26 O 1.42954 * 109.26409 * 52.27749 * 25 24 15 27 27 H 1.09002 * 109.46956 * 60.00323 * 1 2 3 28 28 H 1.08999 * 109.47088 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47079 * 300.00253 * 1 2 3 30 30 H 1.08991 * 109.47677 * 64.99722 * 3 2 1 31 31 H 1.09001 * 109.46833 * 184.99954 * 3 2 1 32 32 H 0.96997 * 120.00202 * 359.97438 * 4 3 2 33 33 H 1.09001 * 110.54990 * 237.18771 * 9 7 5 34 34 H 1.08999 * 110.55341 * 359.86180 * 9 7 5 35 35 H 0.97004 * 125.40845 * 179.97438 * 10 9 7 36 36 H 0.96997 * 125.41462 * 179.97438 * 13 11 10 37 37 H 1.09003 * 109.68373 * 187.39259 * 14 2 1 38 38 H 1.09002 * 109.68630 * 307.94968 * 14 2 1 39 39 H 0.97003 * 119.99564 * 180.02562 * 19 18 16 40 40 H 1.08998 * 109.68705 * 69.18215 * 24 15 14 41 41 H 1.08997 * 109.68306 * 189.70277 * 24 15 14 42 42 H 1.08998 * 109.51005 * 172.22375 * 25 24 15 43 43 H 1.08993 * 109.51034 * 292.37630 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0410 1.4421 0.0000 4 7 1.4574 2.1669 -1.1315 5 6 1.7672 3.4630 -1.3336 6 8 2.5295 4.0289 -0.5790 7 6 1.1665 4.2088 -2.4972 8 1 1.1768 3.5891 -3.3938 9 6 -0.2699 4.6591 -2.1674 10 7 -0.2066 6.1261 -2.2487 11 6 1.0402 6.4956 -2.5697 12 8 1.3738 7.6572 -2.7028 13 7 1.8865 5.4698 -2.7297 14 6 2.0420 -0.7246 1.2501 15 7 1.6970 -2.1504 1.1340 16 6 1.0619 -2.8072 2.1541 17 1 0.4365 -2.2587 2.8428 18 6 1.2219 -4.1781 2.3028 19 7 2.2178 -4.7934 1.7012 20 14 0.0239 -5.1493 3.3567 21 1 -1.0511 -5.7076 2.4976 22 1 0.7447 -6.2588 4.0311 23 1 -0.5745 -4.2540 4.3792 24 6 2.0542 -2.8494 -0.1105 25 6 1.5416 -2.0213 -1.2944 26 8 2.0075 -0.6759 -1.1657 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.7530 1.9297 0.9312 31 1 3.1274 1.4426 -0.0896 32 1 0.8487 1.7139 -1.7357 33 1 -0.9725 4.2652 -2.9019 34 1 -0.5496 4.3411 -1.1630 35 1 -0.9500 6.7301 -2.0951 36 1 2.8250 5.5464 -2.9625 37 1 3.1240 -0.6134 1.3216 38 1 1.5697 -0.3037 2.1378 39 1 2.3294 -5.7514 1.8048 40 1 3.1374 -2.9521 -0.1761 41 1 1.5906 -3.8358 -0.1237 42 1 1.9141 -2.4480 -2.2256 43 1 0.4517 -2.0295 -1.2995 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108167785.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:07 Heat of formation + Delta-G solvation = -62.403075 kcal Electronic energy + Delta-G solvation = -26764.410115 eV Core-core repulsion = 22846.276750 eV Total energy + Delta-G solvation = -3918.133364 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.163 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.58225 -39.76002 -38.81021 -36.47393 -35.21535 -34.40438 -33.31233 -32.24933 -31.02352 -29.59939 -28.25672 -26.70712 -25.71152 -23.97062 -23.22143 -22.07519 -21.47672 -20.68123 -18.88640 -18.31030 -17.87720 -17.01973 -16.63961 -16.21095 -15.91264 -15.79002 -15.15846 -14.98812 -14.71266 -14.55635 -14.21727 -14.02117 -13.91771 -13.65775 -13.44077 -13.15995 -12.95948 -12.82120 -12.41222 -12.10306 -11.73884 -11.22758 -11.16721 -10.92182 -10.74847 -10.61584 -10.51446 -10.42735 -10.29598 -10.05483 -9.73549 -9.61502 -9.20911 -9.16361 -9.11219 -8.60485 -6.81975 -5.91663 -3.35597 2.21540 2.47872 2.73466 3.06182 3.28419 3.36165 3.37574 3.67232 3.87219 4.09859 4.34159 4.37159 4.45745 4.83504 4.93253 5.05362 5.20399 5.24711 5.26438 5.32736 5.45554 5.69418 5.84047 5.94305 5.96448 6.03029 6.22199 6.30694 6.35256 6.40585 6.57402 6.66122 6.66906 6.82282 7.02360 7.03436 7.32479 7.43958 7.64241 7.77610 7.98822 8.25749 8.32558 9.03928 9.66529 10.23329 11.16355 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.035391 B = 0.002696 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.975605 B =10382.055006 C =10568.600643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.088 3.912 3 C 0.137 3.863 4 N -0.711 5.711 5 C 0.498 3.502 6 O -0.526 6.526 7 C 0.103 3.897 8 H 0.118 0.882 9 C 0.104 3.896 10 N -0.739 5.739 11 C 0.706 3.294 12 O -0.585 6.585 13 N -0.713 5.713 14 C 0.128 3.872 15 N -0.589 5.589 16 C -0.255 4.255 17 H 0.069 0.931 18 C 0.003 3.997 19 N -0.902 5.902 20 Si 0.905 3.095 21 H -0.287 1.287 22 H -0.291 1.291 23 H -0.278 1.278 24 C 0.140 3.860 25 C 0.036 3.964 26 O -0.384 6.384 27 H 0.046 0.954 28 H 0.078 0.922 29 H 0.061 0.939 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.404 0.596 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.432 0.568 36 H 0.435 0.565 37 H 0.028 0.972 38 H 0.063 0.937 39 H 0.255 0.745 40 H 0.027 0.973 41 H 0.093 0.907 42 H 0.080 0.920 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.956 12.441 -10.479 17.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.046 3.954 3 C 0.014 3.986 4 N -0.364 5.364 5 C 0.280 3.720 6 O -0.401 6.401 7 C -0.008 4.008 8 H 0.136 0.864 9 C -0.022 4.022 10 N -0.403 5.403 11 C 0.405 3.595 12 O -0.463 6.463 13 N -0.375 5.375 14 C 0.000 4.000 15 N -0.313 5.313 16 C -0.384 4.384 17 H 0.087 0.913 18 C -0.196 4.196 19 N -0.546 5.546 20 Si 0.734 3.266 21 H -0.214 1.214 22 H -0.217 1.217 23 H -0.203 1.203 24 C 0.014 3.986 25 C -0.042 4.042 26 O -0.303 6.303 27 H 0.065 0.935 28 H 0.097 0.903 29 H 0.080 0.920 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.240 0.760 33 H 0.115 0.885 34 H 0.107 0.893 35 H 0.274 0.726 36 H 0.277 0.723 37 H 0.046 0.954 38 H 0.082 0.918 39 H 0.065 0.935 40 H 0.046 0.954 41 H 0.111 0.889 42 H 0.098 0.902 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.056 13.319 -10.082 17.768 hybrid contribution -0.877 -1.071 0.472 1.462 sum -6.933 12.248 -9.610 17.042 Atomic orbital electron populations 1.22251 0.95524 1.03809 1.00756 1.22188 0.93602 0.90241 0.89324 1.21401 0.99014 0.89484 0.88748 1.45982 1.48729 1.10501 1.31143 1.20682 0.82420 0.82390 0.86478 1.90767 1.35240 1.67725 1.46387 1.21860 0.91982 0.88572 0.98388 0.86430 1.22267 0.94494 0.81591 1.03860 1.45044 1.11402 1.07525 1.76294 1.15853 0.81540 0.84709 0.77419 1.91004 1.79055 1.17101 1.59146 1.44812 1.13245 1.04322 1.75171 1.21424 0.97515 0.86957 0.94063 1.44015 1.68565 1.04374 1.14350 1.19185 1.20959 0.90709 1.07578 0.91334 1.25056 0.97175 0.98033 0.99302 1.70038 1.28457 1.09298 1.46767 0.86242 0.80576 0.79833 0.79916 1.21417 1.21695 1.20334 1.21428 0.97974 0.96156 0.83048 1.23356 0.98251 0.82432 1.00117 1.87817 1.73064 1.26673 1.42792 0.93549 0.90268 0.92018 0.90039 0.90577 0.75973 0.88534 0.89342 0.72567 0.72265 0.95366 0.91811 0.93474 0.95449 0.88876 0.90160 0.93585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.22 7.86 37.16 0.29 -1.93 16 2 C 0.09 1.33 0.78 -90.47 -0.07 1.26 16 3 C 0.14 1.79 4.85 -4.05 -0.02 1.77 16 4 N -0.71 -7.15 5.19 -60.30 -0.31 -7.46 16 5 C 0.50 5.33 6.95 -10.99 -0.08 5.25 16 6 O -0.53 -8.07 16.56 5.56 0.09 -7.98 16 7 C 0.10 0.74 4.17 -68.21 -0.28 0.46 16 8 H 0.12 0.50 8.14 -51.93 -0.42 0.07 16 9 C 0.10 0.56 7.70 -3.16 -0.02 0.54 16 10 N -0.74 -5.85 6.37 -64.70 -0.41 -6.26 16 11 C 0.71 8.38 8.92 -88.40 -0.79 7.60 16 12 O -0.59 -9.49 18.05 5.29 0.10 -9.40 16 13 N -0.71 -6.98 5.60 -59.33 -0.33 -7.31 16 14 C 0.13 2.45 5.40 -3.53 -0.02 2.43 16 15 N -0.59 -13.61 2.57 -171.82 -0.44 -14.05 16 16 C -0.26 -6.51 9.64 -15.06 -0.15 -6.66 16 17 H 0.07 1.72 7.88 -52.49 -0.41 1.30 16 18 C 0.00 0.09 4.94 -17.43 -0.09 0.00 16 19 N -0.90 -24.96 11.17 55.49 0.62 -24.34 16 20 Si 0.90 20.60 29.59 -169.99 -5.03 15.57 16 21 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 24 C 0.14 3.09 5.44 -3.53 -0.02 3.07 16 25 C 0.04 0.62 6.60 37.31 0.25 0.87 16 26 O -0.38 -6.33 10.17 -35.23 -0.36 -6.69 16 27 H 0.05 0.48 6.58 -51.93 -0.34 0.13 16 28 H 0.08 1.28 6.12 -51.93 -0.32 0.96 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.40 3.22 6.99 -40.82 -0.29 2.94 16 33 H 0.10 0.23 8.14 -51.93 -0.42 -0.20 16 34 H 0.09 0.47 7.72 -51.93 -0.40 0.07 16 35 H 0.43 2.60 8.96 -40.82 -0.37 2.24 16 36 H 0.43 4.03 8.96 -40.82 -0.37 3.67 16 37 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.06 1.18 7.95 -51.93 -0.41 0.76 16 39 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 40 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.09 2.29 6.17 -51.93 -0.32 1.97 16 42 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.05 0.76 6.25 -51.93 -0.32 0.44 16 LS Contribution 346.91 15.07 5.23 5.23 Total: -1.00 -34.62 346.91 -7.91 -42.54 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -6.07 Total: 5.48 kcal Atomic # 6 Polarization: 15.67 SS G_CDS: -0.99 Total: 14.67 kcal Atomic # 7 Polarization: -58.55 SS G_CDS: -0.88 Total: -59.43 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: -0.17 Total: -24.06 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.03 Total: 15.57 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.62 -7.91 -42.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108167785.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.867 kcal (2) G-P(sol) polarization free energy of solvation -34.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds