Wall clock time and date at job start Fri Apr 10 2020 18:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.51101 * 2 1 4 4 N 1.46501 * 109.46985 * 304.99575 * 3 2 1 5 5 C 1.34780 * 120.00249 * 180.02562 * 4 3 2 6 6 O 1.21281 * 119.99338 * 0.02562 * 5 4 3 7 7 C 1.50695 * 120.00527 * 180.02562 * 5 4 3 8 8 H 1.08998 * 110.48761 * 317.30319 * 7 5 4 9 9 C 1.54104 * 110.54608 * 79.99628 * 7 5 4 10 10 N 1.47062 * 103.85908 * 118.59788 * 9 7 5 11 11 C 1.33942 * 109.18058 * 0.02562 * 10 9 7 12 12 O 1.21582 * 123.04338 * 180.02562 * 11 10 9 13 13 N 1.33949 * 113.91734 * 359.97438 * 11 10 9 14 14 C 1.53294 * 109.51046 * 120.09807 * 2 1 3 15 15 N 1.47154 * 108.38368 * 67.67348 * 14 2 1 16 16 C 1.36939 * 120.97899 * 230.55375 * 15 14 2 17 17 H 1.07997 * 120.00444 * 26.58357 * 16 15 14 18 18 C 1.38820 * 119.99879 * 206.58274 * 16 15 14 19 19 N 1.31619 * 119.99591 * 17.03053 * 18 16 15 20 20 Si 1.86797 * 119.99769 * 197.03472 * 18 16 15 21 21 H 1.48503 * 109.47198 * 94.15581 * 20 18 16 22 22 H 1.48504 * 109.46902 * 214.14729 * 20 18 16 23 23 H 1.48497 * 109.47633 * 334.14843 * 20 18 16 24 24 C 1.47147 * 118.03885 * 50.53692 * 15 14 2 25 25 C 1.53303 * 108.38087 * 309.46228 * 24 15 14 26 26 O 1.42954 * 109.26409 * 52.27749 * 25 24 15 27 27 H 1.09002 * 109.46956 * 60.00323 * 1 2 3 28 28 H 1.08999 * 109.47088 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47079 * 300.00253 * 1 2 3 30 30 H 1.08991 * 109.47677 * 64.99722 * 3 2 1 31 31 H 1.09001 * 109.46833 * 184.99954 * 3 2 1 32 32 H 0.96997 * 120.00202 * 359.97438 * 4 3 2 33 33 H 1.09001 * 110.54990 * 237.18771 * 9 7 5 34 34 H 1.08999 * 110.55341 * 359.86180 * 9 7 5 35 35 H 0.97004 * 125.40845 * 179.97438 * 10 9 7 36 36 H 0.96997 * 125.41462 * 179.97438 * 13 11 10 37 37 H 1.09003 * 109.68373 * 187.39259 * 14 2 1 38 38 H 1.09002 * 109.68630 * 307.94968 * 14 2 1 39 39 H 0.97003 * 119.99564 * 180.02562 * 19 18 16 40 40 H 1.08998 * 109.68705 * 69.18215 * 24 15 14 41 41 H 1.08997 * 109.68306 * 189.70277 * 24 15 14 42 42 H 1.08998 * 109.51005 * 172.22375 * 25 24 15 43 43 H 1.08993 * 109.51034 * 292.37630 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0410 1.4421 0.0000 4 7 1.4574 2.1669 -1.1315 5 6 1.7672 3.4630 -1.3336 6 8 2.5295 4.0289 -0.5790 7 6 1.1665 4.2088 -2.4972 8 1 1.1768 3.5891 -3.3938 9 6 -0.2699 4.6591 -2.1674 10 7 -0.2066 6.1261 -2.2487 11 6 1.0402 6.4956 -2.5697 12 8 1.3738 7.6572 -2.7028 13 7 1.8865 5.4698 -2.7297 14 6 2.0420 -0.7246 1.2501 15 7 1.6970 -2.1504 1.1340 16 6 1.0619 -2.8072 2.1541 17 1 0.4365 -2.2587 2.8428 18 6 1.2219 -4.1781 2.3028 19 7 2.2178 -4.7934 1.7012 20 14 0.0239 -5.1493 3.3567 21 1 -1.0511 -5.7076 2.4976 22 1 0.7447 -6.2588 4.0311 23 1 -0.5745 -4.2540 4.3792 24 6 2.0542 -2.8494 -0.1105 25 6 1.5416 -2.0213 -1.2944 26 8 2.0075 -0.6759 -1.1657 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.7530 1.9297 0.9312 31 1 3.1274 1.4426 -0.0896 32 1 0.8487 1.7139 -1.7357 33 1 -0.9725 4.2652 -2.9019 34 1 -0.5496 4.3411 -1.1630 35 1 -0.9500 6.7301 -2.0951 36 1 2.8250 5.5464 -2.9625 37 1 3.1240 -0.6134 1.3216 38 1 1.5697 -0.3037 2.1378 39 1 2.3294 -5.7514 1.8048 40 1 3.1374 -2.9521 -0.1761 41 1 1.5906 -3.8358 -0.1237 42 1 1.9141 -2.4480 -2.2256 43 1 0.4517 -2.0295 -1.2995 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108167785.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:07 Heat of formation + Delta-G solvation = -92.912830 kcal Electronic energy + Delta-G solvation = -26765.733117 eV Core-core repulsion = 22846.276750 eV Total energy + Delta-G solvation = -3919.456367 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.163 amu Computer time = 2.28 seconds Orbital eigenvalues (eV) -42.32883 -40.92328 -39.96423 -37.37968 -36.59508 -35.84986 -33.98442 -33.62105 -32.73003 -30.41118 -29.70276 -27.99094 -27.10808 -24.93074 -24.66985 -22.96561 -22.79186 -21.57086 -20.26124 -19.21434 -18.81932 -18.58510 -17.53118 -17.30480 -16.96411 -16.77920 -16.60963 -16.21436 -15.88559 -15.58907 -15.55928 -15.18314 -15.03729 -14.88494 -14.61565 -14.50007 -13.95793 -13.87971 -13.50781 -13.13169 -13.05100 -12.88086 -12.73299 -12.54609 -12.39619 -12.06497 -11.98302 -11.83589 -11.57891 -11.38185 -11.07973 -10.74122 -10.55196 -10.46746 -10.11549 -9.81601 -8.70090 -7.88787 -5.35523 1.42743 1.47730 1.49278 1.58035 1.71713 1.97630 2.22070 2.49591 2.81326 3.07936 3.26280 3.34151 3.51070 3.61822 3.92678 4.01898 4.04560 4.11330 4.39280 4.49619 4.55031 4.63648 4.68386 4.72655 4.74104 4.76850 4.82996 4.92977 5.04929 5.11681 5.26609 5.36857 5.48790 5.59270 5.65612 5.91835 6.22305 6.29737 6.30778 6.39969 6.54859 7.09154 7.18714 7.53057 7.77743 8.31265 9.16890 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.035391 B = 0.002696 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.975605 B =10382.055006 C =10568.600643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.099 3.901 3 C 0.148 3.852 4 N -0.696 5.696 5 C 0.500 3.500 6 O -0.577 6.577 7 C 0.107 3.893 8 H 0.162 0.838 9 C 0.103 3.897 10 N -0.729 5.729 11 C 0.694 3.306 12 O -0.641 6.641 13 N -0.715 5.715 14 C 0.120 3.880 15 N -0.605 5.605 16 C -0.257 4.257 17 H 0.073 0.927 18 C -0.051 4.051 19 N -0.937 5.937 20 Si 0.968 3.032 21 H -0.283 1.283 22 H -0.300 1.300 23 H -0.268 1.268 24 C 0.143 3.857 25 C 0.052 3.948 26 O -0.383 6.383 27 H 0.086 0.914 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.056 0.944 32 H 0.420 0.580 33 H 0.144 0.856 34 H 0.095 0.905 35 H 0.440 0.560 36 H 0.434 0.566 37 H 0.008 0.992 38 H 0.068 0.932 39 H 0.250 0.750 40 H -0.008 1.008 41 H 0.065 0.935 42 H 0.105 0.895 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.616 13.042 -11.846 20.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.057 3.943 3 C 0.023 3.977 4 N -0.349 5.349 5 C 0.285 3.715 6 O -0.456 6.456 7 C -0.002 4.002 8 H 0.179 0.821 9 C -0.021 4.021 10 N -0.392 5.392 11 C 0.393 3.607 12 O -0.523 6.523 13 N -0.376 5.376 14 C -0.006 4.006 15 N -0.329 5.329 16 C -0.387 4.387 17 H 0.090 0.910 18 C -0.246 4.246 19 N -0.583 5.583 20 Si 0.796 3.204 21 H -0.209 1.209 22 H -0.227 1.227 23 H -0.192 1.192 24 C 0.017 3.983 25 C -0.025 4.025 26 O -0.302 6.302 27 H 0.105 0.895 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.103 0.897 31 H 0.074 0.926 32 H 0.258 0.742 33 H 0.161 0.839 34 H 0.113 0.887 35 H 0.284 0.716 36 H 0.276 0.724 37 H 0.026 0.974 38 H 0.087 0.913 39 H 0.059 0.941 40 H 0.011 0.989 41 H 0.083 0.917 42 H 0.123 0.877 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.779 13.901 -11.469 20.046 hybrid contribution 0.014 -1.251 0.957 1.575 sum -8.765 12.650 -10.512 18.637 Atomic orbital electron populations 1.22187 0.93315 1.02882 1.03251 1.22048 0.95095 0.90461 0.86648 1.21086 0.97977 0.88448 0.90232 1.45761 1.48485 1.10292 1.30383 1.21318 0.81409 0.82129 0.86642 1.90762 1.37636 1.68767 1.48436 1.22157 0.92237 0.87621 0.98208 0.82111 1.22622 0.93944 0.79693 1.05850 1.45047 1.10205 1.09114 1.74847 1.16184 0.82805 0.84263 0.77468 1.90954 1.80260 1.19433 1.61614 1.44884 1.13312 1.05017 1.74361 1.21613 0.96586 0.85516 0.96889 1.44242 1.68519 1.05772 1.14343 1.19517 1.20410 0.91049 1.07729 0.90966 1.25794 0.98706 0.99080 1.01047 1.70198 1.30334 1.09039 1.48762 0.85244 0.78471 0.78138 0.78533 1.20939 1.22729 1.19217 1.21301 0.95728 0.96161 0.85107 1.23154 0.98979 0.81917 0.98492 1.87830 1.73447 1.26027 1.42900 0.89498 0.92812 0.91153 0.89685 0.92553 0.74176 0.83859 0.88708 0.71616 0.72434 0.97414 0.91328 0.94095 0.98941 0.91681 0.87716 0.92049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.68 7.86 71.98 0.57 -3.12 16 2 C 0.10 2.78 0.78 -10.70 -0.01 2.77 16 3 C 0.15 3.56 4.85 86.38 0.42 3.98 16 4 N -0.70 -11.45 5.19 -463.08 -2.40 -13.85 16 5 C 0.50 9.26 6.95 87.66 0.61 9.87 16 6 O -0.58 -17.06 16.56 -3.03 -0.05 -17.11 16 7 C 0.11 1.13 4.17 44.51 0.19 1.31 16 8 H 0.16 0.41 8.14 -2.39 -0.02 0.39 16 9 C 0.10 0.63 7.70 86.65 0.67 1.30 16 10 N -0.73 -9.52 6.37 -477.33 -3.04 -12.56 16 11 C 0.69 15.61 8.92 179.57 1.60 17.22 16 12 O -0.64 -20.96 18.05 -3.98 -0.07 -21.04 16 13 N -0.72 -12.68 5.60 -460.36 -2.58 -15.26 16 14 C 0.12 4.61 5.40 86.35 0.47 5.08 16 15 N -0.60 -28.21 2.57 -697.53 -1.79 -30.00 16 16 C -0.26 -13.21 9.64 84.04 0.81 -12.39 16 17 H 0.07 3.58 7.88 -2.91 -0.02 3.56 16 18 C -0.05 -2.70 4.94 84.86 0.42 -2.29 16 19 N -0.94 -53.53 11.17 21.65 0.24 -53.28 16 20 Si 0.97 42.67 29.59 68.60 2.03 44.70 16 21 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 22 H -0.30 -13.61 7.11 99.48 0.71 -12.90 16 23 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 24 C 0.14 6.44 5.44 86.36 0.47 6.91 16 25 C 0.05 1.70 6.60 72.08 0.48 2.18 16 26 O -0.38 -11.72 10.17 -148.98 -1.52 -13.23 16 27 H 0.09 1.31 6.58 -2.39 -0.02 1.29 16 28 H 0.05 1.57 6.12 -2.39 -0.01 1.56 16 29 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.42 4.44 6.99 -92.71 -0.65 3.79 16 33 H 0.14 -0.31 8.14 -2.39 -0.02 -0.33 16 34 H 0.09 0.54 7.72 -2.39 -0.02 0.53 16 35 H 0.44 4.23 8.96 -92.71 -0.83 3.40 16 36 H 0.43 7.67 8.96 -92.71 -0.83 6.84 16 37 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 38 H 0.07 2.51 7.95 -2.39 -0.02 2.49 16 39 H 0.25 13.88 8.31 -92.71 -0.77 13.11 16 40 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 41 H 0.06 3.29 6.17 -2.39 -0.01 3.28 16 42 H 0.10 2.93 8.14 -2.39 -0.02 2.91 16 43 H 0.06 1.86 6.25 -2.39 -0.01 1.85 16 Total: -1.00 -80.24 346.91 -3.74 -83.97 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: -1.24 Total: 14.84 kcal Atomic # 6 Polarization: 26.13 SS G_CDS: 6.68 Total: 32.82 kcal Atomic # 7 Polarization: -115.38 SS G_CDS: -9.58 Total: -124.95 kcal Atomic # 8 Polarization: -49.74 SS G_CDS: -1.64 Total: -51.38 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -80.24 -3.74 -83.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108167785.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.938 kcal (2) G-P(sol) polarization free energy of solvation -80.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.28 seconds