Wall clock time and date at job start Fri Apr 10 2020 18:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.47219 * 2 1 4 4 O 1.21277 * 120.00017 * 359.97438 * 3 2 1 5 5 N 1.34773 * 119.99665 * 179.97438 * 3 2 1 6 6 C 1.47022 * 125.65084 * 359.97438 * 5 3 2 7 7 C 1.54329 * 107.27022 * 178.96336 * 6 5 3 8 8 C 1.55154 * 102.94299 * 337.80647 * 7 6 5 9 9 H 1.09008 * 111.00496 * 277.38875 * 8 7 6 10 10 C 1.50696 * 111.00639 * 153.58077 * 8 7 6 11 11 O 1.20833 * 119.99595 * 241.45488 * 10 8 7 12 12 O 1.34224 * 120.00302 * 61.44960 * 10 8 7 13 13 C 1.45206 * 117.00077 * 180.02562 * 12 10 8 14 14 C 1.50699 * 109.47021 * 180.02562 * 13 12 10 15 15 O 1.21282 * 120.00041 * 359.97438 * 14 13 12 16 16 N 1.34779 * 120.00037 * 180.02562 * 14 13 12 17 17 C 1.46500 * 120.00169 * 180.02562 * 16 14 13 18 18 C 1.50696 * 109.47324 * 179.97438 * 17 16 14 19 19 H 1.07999 * 119.99822 * 359.97438 * 18 17 16 20 20 C 1.37876 * 120.00339 * 180.02562 * 18 17 16 21 21 N 1.31514 * 119.99769 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00300 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46755 * 89.99832 * 22 20 18 24 24 H 1.48499 * 109.47293 * 209.99842 * 22 20 18 25 25 H 1.48500 * 109.46738 * 330.00088 * 22 20 18 26 26 C 1.47428 * 125.64727 * 180.02562 * 5 3 2 27 27 H 1.09001 * 109.46837 * 59.99893 * 1 2 3 28 28 H 1.08997 * 109.47330 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47013 * 300.00281 * 1 2 3 30 30 H 1.08999 * 109.47013 * 239.99718 * 2 1 3 31 31 H 1.09001 * 109.46837 * 120.00107 * 2 1 3 32 32 H 1.08996 * 109.88290 * 59.54582 * 6 5 3 33 33 H 1.08995 * 110.00905 * 298.44973 * 6 5 3 34 34 H 1.09005 * 110.71711 * 219.44342 * 7 6 5 35 35 H 1.09002 * 110.87224 * 96.24015 * 7 6 5 36 36 H 1.09000 * 109.47070 * 300.00162 * 13 12 10 37 37 H 1.09001 * 109.46626 * 60.00180 * 13 12 10 38 38 H 0.96996 * 119.99844 * 359.97438 * 16 14 13 39 39 H 1.09004 * 109.46923 * 300.00119 * 17 16 14 40 40 H 1.09004 * 109.47042 * 59.99705 * 17 16 14 41 41 H 0.97000 * 120.00540 * 180.02562 * 21 20 18 42 42 H 1.08994 * 110.36879 * 85.26604 * 26 5 3 43 43 H 1.09006 * 110.36605 * 322.94226 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3426 -0.0005 5 7 3.3574 1.6670 0.0005 6 6 4.4181 0.6489 0.0017 7 6 5.7690 1.3947 -0.0248 8 6 5.3895 2.7805 -0.6104 9 1 5.3421 2.7450 -1.6989 10 6 6.3525 3.8439 -0.1491 11 8 5.9532 4.7769 0.5068 12 8 7.6535 3.7547 -0.4667 13 6 8.5231 4.8145 0.0119 14 6 9.9360 4.5471 -0.4391 15 8 10.1856 3.5602 -1.0984 16 7 10.9224 5.4040 -0.1088 17 6 12.2958 5.1444 -0.5476 18 6 13.1984 6.2442 -0.0508 19 1 12.7897 7.0557 0.5330 20 6 14.5456 6.2150 -0.3425 21 7 15.0431 5.2271 -1.0539 22 14 15.6642 7.5787 0.2726 23 1 16.1990 7.2150 1.6094 24 1 16.7903 7.7619 -0.6779 25 1 14.8925 8.8433 0.3755 26 6 3.9833 3.0018 0.0011 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 4.3263 0.0169 -0.8816 33 1 4.3489 0.0392 0.9025 34 1 6.4794 0.8830 -0.6742 35 1 6.1746 1.4993 0.9816 36 1 8.1879 5.7698 -0.3921 37 1 8.4891 4.8484 1.1008 38 1 10.7229 6.1931 0.4189 39 1 12.6314 4.1887 -0.1448 40 1 12.3292 5.1115 -1.6366 41 1 15.9910 5.2063 -1.2588 42 1 4.0677 3.3808 1.0196 43 1 3.4062 3.6917 -0.6147 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116329203.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:51 Heat of formation + Delta-G solvation = -188.957582 kcal Electronic energy + Delta-G solvation = -24960.863654 eV Core-core repulsion = 21004.949723 eV Total energy + Delta-G solvation = -3955.913931 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -42.05437 -41.01043 -40.35254 -38.55822 -37.53054 -36.17776 -34.41510 -33.96384 -32.89312 -30.84689 -30.24750 -28.59308 -26.59678 -24.75349 -23.94902 -23.46674 -21.64935 -21.43271 -20.24040 -19.28270 -18.96901 -18.35808 -18.08897 -17.69325 -17.39989 -16.96833 -16.63139 -16.44241 -16.19941 -15.90888 -15.44343 -14.82840 -14.68943 -14.56926 -14.32213 -14.11842 -13.95057 -13.86151 -13.62303 -13.45929 -13.13379 -12.95071 -12.93671 -12.71939 -12.60592 -12.45482 -12.23319 -12.08565 -11.95463 -11.89555 -11.61748 -11.49639 -10.98033 -10.90579 -10.81547 -9.92486 -9.76805 -8.29611 -6.45990 0.97025 1.10152 1.44933 1.46234 1.55711 1.57546 1.58428 1.93852 2.34484 2.57235 3.05829 3.08896 3.35840 3.60810 3.71994 3.75617 3.96850 4.04801 4.06499 4.12995 4.19675 4.21833 4.28584 4.53677 4.69018 4.73341 4.79463 4.91920 5.00801 5.03618 5.07117 5.10005 5.16876 5.20638 5.22664 5.37167 5.42073 5.62885 5.82463 6.41520 6.49564 6.63106 6.78162 7.08765 7.20618 7.35648 8.82313 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.052217 B = 0.001866 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.097121 B =14998.673983 C =15380.438938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.131 4.131 3 C 0.518 3.482 4 O -0.591 6.591 5 N -0.622 5.622 6 C 0.100 3.900 7 C -0.117 4.117 8 C -0.091 4.091 9 H 0.144 0.856 10 C 0.478 3.522 11 O -0.527 6.527 12 O -0.339 6.339 13 C 0.059 3.941 14 C 0.500 3.500 15 O -0.581 6.581 16 N -0.700 5.700 17 C 0.266 3.734 18 C -0.558 4.558 19 H 0.085 0.915 20 C 0.006 3.994 21 N -0.929 5.929 22 Si 0.984 3.016 23 H -0.271 1.271 24 H -0.285 1.285 25 H -0.257 1.257 26 C 0.124 3.876 27 H 0.045 0.955 28 H 0.087 0.913 29 H 0.043 0.957 30 H 0.121 0.879 31 H 0.119 0.881 32 H 0.105 0.895 33 H 0.099 0.901 34 H 0.115 0.885 35 H 0.082 0.918 36 H 0.122 0.878 37 H 0.125 0.875 38 H 0.412 0.588 39 H -0.006 1.006 40 H -0.007 1.007 41 H 0.269 0.731 42 H 0.068 0.932 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.458 -11.107 3.600 27.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.170 4.170 3 C 0.310 3.690 4 O -0.472 6.472 5 N -0.356 5.356 6 C -0.021 4.021 7 C -0.155 4.155 8 C -0.110 4.110 9 H 0.162 0.838 10 C 0.321 3.679 11 O -0.416 6.416 12 O -0.254 6.254 13 C -0.018 4.018 14 C 0.286 3.714 15 O -0.462 6.462 16 N -0.351 5.351 17 C 0.144 3.856 18 C -0.596 4.596 19 H 0.103 0.897 20 C -0.194 4.194 21 N -0.567 5.567 22 Si 0.807 3.193 23 H -0.196 1.196 24 H -0.210 1.210 25 H -0.181 1.181 26 C 0.001 3.999 27 H 0.064 0.936 28 H 0.106 0.894 29 H 0.062 0.938 30 H 0.139 0.861 31 H 0.137 0.863 32 H 0.123 0.877 33 H 0.117 0.883 34 H 0.134 0.866 35 H 0.100 0.900 36 H 0.140 0.860 37 H 0.142 0.858 38 H 0.248 0.752 39 H 0.012 0.988 40 H 0.011 0.989 41 H 0.078 0.922 42 H 0.087 0.913 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -24.694 -11.132 3.259 27.282 hybrid contribution 0.942 1.321 0.326 1.655 sum -23.752 -9.811 3.585 25.947 Atomic orbital electron populations 1.21560 0.93625 1.02736 1.01753 1.21696 0.97878 0.90615 1.06808 1.21358 0.79841 0.93314 0.74500 1.90704 1.55597 1.48660 1.52214 1.48644 1.05826 1.07891 1.73251 1.22357 0.83979 0.90642 1.05138 1.22739 0.98031 0.91587 1.03149 1.22184 0.90773 0.93616 1.04466 0.83794 1.23750 0.81602 0.86271 0.76254 1.90698 1.78607 1.34576 1.37699 1.86551 1.19411 1.48538 1.70877 1.22758 0.85564 0.91050 1.02406 1.20650 0.87325 0.83166 0.80241 1.90685 1.84589 1.29887 1.40994 1.46054 1.08309 1.26375 1.54358 1.18630 0.77372 0.95987 0.93612 1.21618 0.93452 1.08988 1.35558 0.89691 1.26016 0.99867 0.98802 0.94691 1.70121 1.14459 1.33368 1.38764 0.85170 0.77598 0.78602 0.77928 1.19648 1.21040 1.18070 1.21867 0.90691 0.86074 1.01308 0.93623 0.89401 0.93757 0.86098 0.86339 0.87715 0.88288 0.86617 0.89957 0.85997 0.85771 0.75191 0.98784 0.98897 0.92207 0.91334 0.90865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.20 71.98 0.66 -0.86 16 2 C -0.13 -1.10 5.61 29.85 0.17 -0.94 16 3 C 0.52 9.30 7.85 87.66 0.69 9.99 16 4 O -0.59 -16.61 16.24 -3.02 -0.05 -16.66 16 5 N -0.62 -9.21 3.33 -811.75 -2.70 -11.91 16 6 C 0.10 0.70 6.49 86.73 0.56 1.26 16 7 C -0.12 -1.23 6.40 31.78 0.20 -1.03 16 8 C -0.09 -1.42 3.55 -10.14 -0.04 -1.46 16 9 H 0.14 1.80 8.14 -2.38 -0.02 1.78 16 10 C 0.48 10.93 7.26 71.23 0.52 11.44 16 11 O -0.53 -14.35 15.55 21.94 0.34 -14.01 16 12 O -0.34 -9.19 9.74 -45.00 -0.44 -9.63 16 13 C 0.06 1.58 5.94 71.24 0.42 2.00 16 14 C 0.50 19.04 7.91 87.66 0.69 19.74 16 15 O -0.58 -27.76 16.50 15.76 0.26 -27.50 16 16 N -0.70 -27.87 5.55 -466.78 -2.59 -30.46 16 17 C 0.27 14.03 5.43 85.63 0.46 14.50 16 18 C -0.56 -29.36 9.28 25.60 0.24 -29.13 16 19 H 0.09 4.02 7.60 -2.91 -0.02 3.99 16 20 C 0.01 0.33 5.46 84.65 0.46 0.80 16 21 N -0.93 -54.57 13.29 21.45 0.28 -54.28 16 22 Si 0.98 41.29 29.54 68.60 2.03 43.32 16 23 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 24 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 25 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 26 C 0.12 2.30 5.97 86.86 0.52 2.82 16 27 H 0.04 0.65 8.10 -2.39 -0.02 0.63 16 28 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.04 0.64 8.10 -2.39 -0.02 0.62 16 30 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 33 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 34 H 0.12 1.02 8.14 -2.38 -0.02 1.00 16 35 H 0.08 0.96 8.03 -2.39 -0.02 0.94 16 36 H 0.12 2.74 8.13 -2.39 -0.02 2.72 16 37 H 0.12 2.73 8.13 -2.39 -0.02 2.71 16 38 H 0.41 13.21 8.32 -92.71 -0.77 12.44 16 39 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 40 H -0.01 -0.41 8.14 -2.38 -0.02 -0.43 16 41 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 42 H 0.07 1.48 7.51 -2.39 -0.02 1.46 16 43 H 0.07 1.58 8.04 -2.38 -0.02 1.56 16 Total: -1.00 -80.92 370.95 2.95 -77.98 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: 0.25 Total: 14.03 kcal Atomic # 6 Polarization: 23.57 SS G_CDS: 5.57 Total: 29.13 kcal Atomic # 7 Polarization: -91.65 SS G_CDS: -5.00 Total: -96.65 kcal Atomic # 8 Polarization: -67.91 SS G_CDS: 0.11 Total: -67.80 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.32 kcal Total: -80.92 2.95 -77.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116329203.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.982 kcal (2) G-P(sol) polarization free energy of solvation -80.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds