Wall clock time and date at job start Fri Apr 10 2020 18:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42906 * 113.99660 * 2 1 4 4 H 1.09001 * 110.64237 * 26.85476 * 3 2 1 5 5 C 1.55154 * 110.72216 * 150.00175 * 3 2 1 6 6 C 1.54905 * 101.58176 * 153.85889 * 5 3 2 7 7 N 1.47420 * 104.83607 * 322.99110 * 6 5 3 8 8 C 1.34777 * 125.65090 * 204.08864 * 7 6 5 9 9 O 1.21345 * 120.00251 * 180.02562 * 8 7 6 10 10 C 1.49455 * 119.99976 * 0.02562 * 8 7 6 11 11 O 1.21354 * 119.99789 * 359.97438 * 10 8 7 12 12 N 1.34766 * 120.00077 * 179.97438 * 10 8 7 13 13 C 1.47026 * 125.65163 * 359.96166 * 12 10 8 14 14 C 1.54319 * 107.27547 * 181.09164 * 13 12 10 15 15 C 1.55156 * 102.94035 * 22.19376 * 14 13 12 16 16 O 1.42902 * 111.03908 * 82.58981 * 15 14 13 17 17 C 1.50706 * 111.00585 * 206.42288 * 15 14 13 18 18 H 1.08000 * 119.99302 * 353.65043 * 17 15 14 19 19 C 1.37871 * 120.00436 * 173.37576 * 17 15 14 20 20 N 1.31515 * 119.99684 * 359.97438 * 19 17 15 21 21 Si 1.86800 * 120.00405 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47050 * 59.99579 * 21 19 17 23 23 H 1.48496 * 109.47289 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.46492 * 299.99554 * 21 19 17 25 25 C 1.47431 * 125.65061 * 179.97438 * 12 10 8 26 26 C 1.47024 * 108.70199 * 24.35529 * 7 6 5 27 27 H 1.08997 * 109.46953 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47220 * 299.99811 * 1 2 3 29 29 H 1.08989 * 109.47702 * 60.00458 * 1 2 3 30 30 H 1.08998 * 111.00351 * 35.78957 * 5 3 2 31 31 H 1.08995 * 111.00351 * 271.93456 * 5 3 2 32 32 H 1.09004 * 110.36770 * 204.15165 * 6 5 3 33 33 H 1.09003 * 110.36809 * 81.83147 * 6 5 3 34 34 H 1.09002 * 109.87801 * 300.51424 * 13 12 10 35 35 H 1.09004 * 109.87841 * 61.67098 * 13 12 10 36 36 H 1.09002 * 110.72397 * 263.83011 * 14 13 12 37 37 H 1.09001 * 110.72322 * 140.55259 * 14 13 12 38 38 H 0.96699 * 114.00112 * 183.20380 * 16 15 14 39 39 H 0.97004 * 120.00247 * 180.02562 * 20 19 17 40 40 H 1.09005 * 110.36414 * 37.00224 * 25 12 10 41 41 H 1.08995 * 110.36826 * 274.67824 * 25 12 10 42 42 H 1.08996 * 109.88147 * 118.13038 * 26 7 6 43 43 H 1.09000 * 109.88209 * 239.29435 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3350 2.0267 0.4608 5 6 3.3816 1.2960 0.7255 6 6 4.0986 2.4919 0.0509 7 7 3.6683 2.4440 -1.3582 8 6 4.3430 2.9621 -2.4037 9 8 3.8917 2.8640 -3.5258 10 6 5.6469 3.6577 -2.1808 11 8 6.0980 3.7563 -1.0586 12 7 6.3217 4.1754 -3.2262 13 6 5.8930 4.1268 -4.6317 14 6 6.9890 4.8187 -5.4693 15 6 8.2397 4.7174 -4.5566 16 8 8.8695 3.4415 -4.6892 17 6 9.2133 5.8300 -4.8488 18 1 9.0367 6.4978 -5.6791 19 6 10.3263 5.9990 -4.0529 20 7 10.5381 5.1894 -3.0383 21 14 11.5327 7.3785 -4.4147 22 1 10.8307 8.6844 -4.3316 23 1 12.6351 7.3456 -3.4203 24 1 12.0910 7.2025 -5.7794 25 6 7.6123 4.8841 -3.1499 26 6 2.3782 1.7428 -1.4336 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8899 30 1 3.9158 0.3644 0.5389 31 1 3.2589 1.4667 1.7950 32 1 5.1801 2.3747 0.1216 33 1 3.7870 3.4297 0.5110 34 1 5.7823 3.0902 -4.9499 35 1 4.9472 4.6558 -4.7493 36 1 6.7313 5.8613 -5.6560 37 1 7.1516 4.2868 -6.4067 38 1 9.6270 3.3139 -4.1019 39 1 11.3210 5.3084 -2.4781 40 1 8.2511 4.4284 -2.3933 41 1 7.4532 5.9392 -2.9278 42 1 1.6142 2.4137 -1.8264 43 1 2.4697 0.8661 -2.0747 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118185025.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:11:35 Heat of formation + Delta-G solvation = -165.064910 kcal Electronic energy + Delta-G solvation = -26862.576880 eV Core-core repulsion = 22907.699013 eV Total energy + Delta-G solvation = -3954.877867 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 2.49 seconds Orbital eigenvalues (eV) -41.98747 -40.50393 -39.34671 -38.88348 -37.47109 -36.06157 -34.24550 -32.27699 -31.96802 -30.07584 -29.64834 -27.92927 -27.32256 -25.76526 -24.21282 -22.97423 -22.00084 -21.51261 -20.35798 -19.15162 -18.43704 -18.35515 -18.00566 -17.27286 -17.09042 -16.64507 -16.43926 -16.19853 -16.06169 -15.69371 -15.18154 -14.83856 -14.74512 -14.68858 -14.39525 -14.07042 -13.92544 -13.53969 -13.49022 -13.32926 -13.10153 -12.81621 -12.80166 -12.60230 -12.48117 -12.35644 -12.28564 -12.18397 -12.11630 -11.66359 -11.20198 -10.79895 -10.67850 -10.51656 -10.33770 -10.01055 -9.61610 -8.25192 -6.42592 0.28641 1.09427 1.45565 1.46389 1.54249 2.04941 2.26119 2.40220 2.79992 3.00386 3.07198 3.46432 3.48355 3.75404 3.97662 4.04225 4.13651 4.20243 4.26719 4.30053 4.45264 4.55836 4.60330 4.64803 4.66419 4.71194 4.78748 4.86931 4.91612 4.96491 5.04025 5.05100 5.07816 5.18414 5.32592 5.42609 5.73864 5.93870 6.03134 6.18926 6.25522 6.49527 6.65922 6.86739 7.26227 7.34195 8.80084 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.032699 B = 0.002997 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.093462 B = 9339.139686 C = 9835.595118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.394 6.394 3 C 0.086 3.914 4 H 0.111 0.889 5 C -0.123 4.123 6 C 0.094 3.906 7 N -0.588 5.588 8 C 0.525 3.475 9 O -0.535 6.535 10 C 0.506 3.494 11 O -0.549 6.549 12 N -0.583 5.583 13 C 0.119 3.881 14 C -0.115 4.115 15 C 0.233 3.767 16 O -0.588 6.588 17 C -0.556 4.556 18 H 0.070 0.930 19 C 0.028 3.972 20 N -0.914 5.914 21 Si 0.966 3.034 22 H -0.269 1.269 23 H -0.285 1.285 24 H -0.271 1.271 25 C 0.108 3.892 26 C 0.082 3.918 27 H 0.097 0.903 28 H 0.061 0.939 29 H 0.049 0.951 30 H 0.078 0.922 31 H 0.121 0.879 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.066 0.934 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.375 0.625 39 H 0.271 0.729 40 H 0.060 0.940 41 H 0.057 0.943 42 H 0.084 0.916 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.521 -5.854 7.572 20.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.312 6.312 3 C 0.027 3.973 4 H 0.129 0.871 5 C -0.160 4.160 6 C -0.028 4.028 7 N -0.323 5.323 8 C 0.307 3.693 9 O -0.412 6.412 10 C 0.289 3.711 11 O -0.429 6.429 12 N -0.315 5.315 13 C -0.003 4.003 14 C -0.152 4.152 15 C 0.192 3.808 16 O -0.396 6.396 17 C -0.594 4.594 18 H 0.088 0.912 19 C -0.173 4.173 20 N -0.553 5.553 21 Si 0.791 3.209 22 H -0.194 1.194 23 H -0.210 1.210 24 H -0.197 1.197 25 C -0.014 4.014 26 C -0.040 4.040 27 H 0.115 0.885 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.096 0.904 31 H 0.140 0.860 32 H 0.103 0.897 33 H 0.107 0.893 34 H 0.084 0.916 35 H 0.101 0.899 36 H 0.112 0.888 37 H 0.103 0.897 38 H 0.224 0.776 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.103 0.897 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -18.793 -6.155 7.250 21.062 hybrid contribution 1.290 0.898 0.242 1.590 sum -17.503 -5.256 7.491 19.751 Atomic orbital electron populations 1.23072 0.79058 1.04141 1.01280 1.87950 1.21870 1.26696 1.94664 1.23154 0.95946 0.85966 0.92222 0.87126 1.22966 0.93795 0.97759 1.01517 1.22797 1.01631 0.99997 0.78360 1.48161 1.22015 1.54084 1.08064 1.19604 0.85001 0.80291 0.84356 1.90712 1.68913 1.58726 1.22874 1.19976 0.85968 0.80798 0.84361 1.90657 1.69873 1.59558 1.22774 1.48695 1.22306 1.52520 1.07986 1.22147 0.97837 1.01302 0.79022 1.22724 0.92663 1.01462 0.98388 1.19874 0.89800 0.82290 0.88811 1.86122 1.49500 1.37469 1.66522 1.21714 1.08018 1.14756 1.14939 0.91155 1.25817 0.99234 0.98312 0.93953 1.69819 1.29079 1.38864 1.17526 0.85486 0.78091 0.79367 0.77957 1.19423 1.21048 1.19658 1.23063 0.81360 0.94613 1.02319 1.22689 0.83933 0.97086 1.00267 0.88469 0.92057 0.93275 0.90367 0.86033 0.89718 0.89259 0.91602 0.89856 0.88772 0.89674 0.77634 0.91987 0.92157 0.92442 0.89743 0.91240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 10.85 113.37 1.23 1.43 16 2 O -0.39 -6.63 10.44 -148.98 -1.55 -8.19 16 3 C 0.09 1.33 3.44 31.79 0.11 1.44 16 4 H 0.11 1.12 7.82 -2.39 -0.02 1.11 16 5 C -0.12 -2.02 6.81 31.98 0.22 -1.80 16 6 C 0.09 2.20 6.06 86.85 0.53 2.72 16 7 N -0.59 -16.62 3.33 -813.34 -2.70 -19.32 16 8 C 0.52 18.84 7.88 87.27 0.69 19.52 16 9 O -0.53 -20.43 14.45 -3.23 -0.05 -20.47 16 10 C 0.51 20.97 7.88 87.27 0.69 21.66 16 11 O -0.55 -24.04 14.03 -3.26 -0.05 -24.09 16 12 N -0.58 -25.37 3.33 -813.31 -2.71 -28.08 16 13 C 0.12 4.64 5.49 86.73 0.48 5.11 16 14 C -0.11 -4.63 6.13 31.78 0.19 -4.44 16 15 C 0.23 11.38 0.88 -10.14 -0.01 11.37 16 16 O -0.59 -30.64 13.18 -148.98 -1.96 -32.60 16 17 C -0.56 -28.65 8.27 25.60 0.21 -28.44 16 18 H 0.07 3.50 7.79 -2.91 -0.02 3.48 16 19 C 0.03 1.44 5.27 84.65 0.45 1.89 16 20 N -0.91 -48.76 10.67 21.45 0.23 -48.53 16 21 Si 0.97 41.08 29.54 68.60 2.03 43.10 16 22 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 23 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 24 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 25 C 0.11 5.29 5.38 86.86 0.47 5.75 16 26 C 0.08 1.78 6.65 86.73 0.58 2.36 16 27 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.06 0.41 8.11 -2.38 -0.02 0.39 16 29 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.08 2.46 6.16 -2.38 -0.01 2.45 16 33 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.07 2.62 7.58 -2.39 -0.02 2.60 16 35 H 0.08 2.93 7.69 -2.39 -0.02 2.91 16 36 H 0.09 3.48 8.03 -2.39 -0.02 3.46 16 37 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 38 H 0.37 20.12 7.52 -74.06 -0.56 19.56 16 39 H 0.27 13.87 8.31 -92.71 -0.77 13.10 16 40 H 0.06 3.30 7.31 -2.38 -0.02 3.28 16 41 H 0.06 2.86 8.03 -2.39 -0.02 2.84 16 42 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.07 1.70 8.05 -2.39 -0.02 1.68 16 Total: -1.00 -64.00 350.68 -0.47 -64.47 By element: Atomic # 1 Polarization: 34.66 SS G_CDS: 0.47 Total: 35.13 kcal Atomic # 6 Polarization: 32.75 SS G_CDS: 5.82 Total: 38.57 kcal Atomic # 7 Polarization: -90.75 SS G_CDS: -5.18 Total: -95.93 kcal Atomic # 8 Polarization: -81.74 SS G_CDS: -3.61 Total: -85.35 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.10 kcal Total: -64.00 -0.47 -64.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118185025.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.594 kcal (2) G-P(sol) polarization free energy of solvation -63.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.49 seconds