Wall clock time and date at job start Fri Apr 10 2020 18:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21278 * 119.99832 * 2 1 4 4 N 1.34771 * 120.00025 * 180.02562 * 2 1 3 5 5 C 1.46965 * 120.59528 * 354.88723 * 4 2 1 6 6 C 1.53370 * 108.63406 * 124.79713 * 5 4 2 7 7 N 1.46962 * 108.63310 * 49.42748 * 6 5 4 8 8 C 1.34777 * 120.59260 * 124.75271 * 7 6 5 9 9 O 1.21591 * 120.00013 * 185.30046 * 8 7 6 10 10 N 1.34774 * 120.00371 * 5.29961 * 8 7 6 11 11 C 1.46499 * 120.00227 * 185.18422 * 10 8 7 12 12 C 1.50700 * 109.47203 * 179.97438 * 11 10 8 13 13 O 1.21294 * 119.99929 * 0.02562 * 12 11 10 14 14 N 1.34774 * 120.00382 * 180.02562 * 12 11 10 15 15 C 1.37098 * 120.00215 * 180.02562 * 14 12 11 16 16 H 1.07994 * 120.00120 * 359.97438 * 15 14 12 17 17 C 1.38953 * 119.99774 * 179.97438 * 15 14 12 18 18 N 1.31413 * 120.00083 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99934 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47053 * 89.99977 * 19 17 15 21 21 H 1.48497 * 109.47031 * 209.99989 * 19 17 15 22 22 H 1.48500 * 109.46903 * 330.00031 * 19 17 15 23 23 C 1.46965 * 118.81089 * 304.77001 * 7 6 5 24 24 H 1.08995 * 109.75094 * 295.39808 * 23 7 6 25 25 C 1.53001 * 109.60694 * 174.97169 * 23 7 6 26 26 C 1.46962 * 120.59383 * 174.91530 * 4 2 1 27 27 H 1.08997 * 109.46821 * 185.30442 * 1 2 3 28 28 H 1.09002 * 109.46994 * 305.29950 * 1 2 3 29 29 H 1.09002 * 109.46663 * 65.30068 * 1 2 3 30 30 H 1.09003 * 109.60791 * 5.05385 * 5 4 2 31 31 H 1.08994 * 109.61378 * 244.54684 * 5 4 2 32 32 H 1.09002 * 109.61288 * 289.67907 * 6 5 4 33 33 H 1.09001 * 109.60838 * 169.17264 * 6 5 4 34 34 H 0.97005 * 119.99878 * 5.18582 * 10 8 7 35 35 H 1.08996 * 109.47287 * 299.99848 * 11 10 8 36 36 H 1.08998 * 109.47310 * 60.00248 * 11 10 8 37 37 H 0.97006 * 119.99418 * 359.97438 * 14 12 11 38 38 H 0.97001 * 120.00097 * 180.02562 * 18 17 15 39 39 H 1.09000 * 109.47743 * 302.05520 * 25 23 7 40 40 H 1.09003 * 109.47501 * 62.05767 * 25 23 7 41 41 H 1.09002 * 109.47411 * 182.05456 * 25 23 7 42 42 H 1.09006 * 109.61426 * 115.46112 * 26 4 2 43 43 H 1.09001 * 109.61208 * 354.94526 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4637 -2.4450 0.1116 6 6 1.8535 -3.3318 -1.0774 7 7 3.3188 -3.3494 -1.1896 8 6 3.9927 -4.5166 -1.1892 9 8 5.2086 -4.5166 -1.1852 10 7 3.3190 -5.6839 -1.1932 11 6 4.0467 -6.9501 -1.0781 12 6 3.0685 -8.0961 -1.1073 13 8 1.8803 -7.8767 -1.2142 14 7 3.5138 -9.3648 -1.0146 15 6 2.6239 -10.4074 -1.0417 16 1 1.5660 -10.2121 -1.1369 17 6 3.0831 -11.7154 -0.9467 18 7 4.3703 -11.9530 -0.8304 19 14 1.8706 -13.1359 -0.9829 20 1 1.6629 -13.5738 -2.3866 21 1 2.4096 -14.2672 -0.1861 22 1 0.5755 -12.6960 -0.4047 23 6 4.0360 -2.0716 -1.3017 24 1 3.7620 -1.5760 -2.2330 25 6 5.5445 -2.3259 -1.2798 26 6 3.6462 -1.1848 -0.1126 27 1 -0.3633 -1.0233 0.0950 28 1 -0.3633 0.5939 0.8387 29 1 -0.3633 0.4294 -0.9337 30 1 0.3890 -2.2639 0.0961 31 1 1.7403 -2.9393 1.0428 32 1 1.4214 -2.9272 -1.9927 33 1 1.4869 -4.3451 -0.9137 34 1 2.3521 -5.6855 -1.2722 35 1 4.7436 -7.0456 -1.9107 36 1 4.5986 -6.9679 -0.1384 37 1 4.4640 -9.5402 -0.9295 38 1 4.6910 -12.8661 -0.7644 39 1 5.8121 -2.8459 -0.3601 40 1 5.8223 -2.9385 -2.1376 41 1 6.0742 -1.3743 -1.3264 42 1 4.0783 -1.5895 0.8026 43 1 4.0128 -0.1715 -0.2764 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323854820.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:36 Heat of formation + Delta-G solvation = -64.126681 kcal Electronic energy + Delta-G solvation = -26348.716176 eV Core-core repulsion = 22430.508071 eV Total energy + Delta-G solvation = -3918.208106 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.163 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.00195 -39.75956 -38.38136 -37.14581 -34.94149 -34.28417 -34.00078 -32.62750 -31.40261 -30.30366 -28.92495 -27.23656 -26.16122 -24.53236 -23.62644 -22.20401 -20.28068 -19.66409 -19.22436 -18.21964 -17.87433 -17.02993 -16.48972 -16.26404 -15.94742 -15.70454 -15.63746 -14.75269 -14.69120 -14.58449 -14.17952 -14.03683 -13.88435 -13.52906 -13.45209 -13.18358 -12.70470 -12.55000 -12.41369 -12.25909 -11.98638 -11.83334 -11.67596 -11.65774 -11.59574 -11.33322 -11.15374 -10.49192 -10.35073 -10.13063 -9.67244 -9.51322 -9.17836 -8.82884 -8.67106 -8.40294 -8.13832 -6.54949 -3.97161 2.29294 2.37895 2.79579 3.08696 3.19597 3.24452 3.27156 3.70842 3.85551 4.09153 4.21396 4.42712 4.47591 4.63869 4.79792 4.84990 4.91164 4.98122 5.04394 5.08496 5.13866 5.21012 5.36077 5.45052 5.54613 5.59446 5.72649 5.84847 5.95993 6.03889 6.05663 6.11929 6.24491 6.58983 6.75663 6.89497 7.05632 7.42464 7.82267 7.88586 8.07099 8.41038 8.70959 9.00918 9.35649 9.83125 10.61868 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.025914 B = 0.002645 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.228107 B =10582.465053 C =11496.074871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.513 3.487 3 O -0.549 6.549 4 N -0.613 5.613 5 C 0.087 3.913 6 C 0.094 3.906 7 N -0.630 5.630 8 C 0.708 3.292 9 O -0.584 6.584 10 N -0.725 5.725 11 C 0.128 3.872 12 C 0.428 3.572 13 O -0.600 6.600 14 N -0.548 5.548 15 C -0.305 4.305 16 H 0.105 0.895 17 C 0.026 3.974 18 N -0.894 5.894 19 Si 0.933 3.067 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.269 1.269 23 C 0.151 3.849 24 H 0.072 0.928 25 C -0.133 4.133 26 C 0.100 3.900 27 H 0.084 0.916 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.106 0.894 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.099 0.901 34 H 0.404 0.596 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.396 0.604 38 H 0.275 0.725 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.042 0.958 42 H 0.074 0.926 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.651 18.659 1.139 19.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.303 3.697 3 O -0.427 6.427 4 N -0.347 5.347 5 C -0.037 4.037 6 C -0.031 4.031 7 N -0.369 5.369 8 C 0.410 3.590 9 O -0.463 6.463 10 N -0.385 5.385 11 C -0.001 4.001 12 C 0.214 3.786 13 O -0.487 6.487 14 N -0.183 5.183 15 C -0.435 4.435 16 H 0.123 0.877 17 C -0.177 4.177 18 N -0.534 5.534 19 Si 0.760 3.240 20 H -0.203 1.203 21 H -0.208 1.208 22 H -0.193 1.193 23 C 0.046 3.954 24 H 0.090 0.910 25 C -0.191 4.191 26 C -0.024 4.024 27 H 0.103 0.897 28 H 0.113 0.887 29 H 0.114 0.886 30 H 0.124 0.876 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.117 0.883 34 H 0.244 0.756 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.230 0.770 38 H 0.085 0.915 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.061 0.939 42 H 0.092 0.908 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -4.119 19.122 1.115 19.592 hybrid contribution -0.542 -1.078 0.003 1.206 sum -4.661 18.044 1.118 18.670 Atomic orbital electron populations 1.22048 0.91721 1.04735 1.05444 1.20852 0.90701 0.82946 0.75222 1.90713 1.70678 1.31010 1.50281 1.48142 1.07450 1.06140 1.72947 1.22364 0.98070 0.83948 0.99315 1.22065 0.81067 1.01447 0.98505 1.47203 1.06116 1.04877 1.78683 1.15835 0.85202 0.80075 0.77903 1.90966 1.11273 1.85811 1.58213 1.45086 1.11378 1.03901 1.78152 1.20786 0.94117 0.82208 1.02957 1.19751 0.89110 0.84171 0.85590 1.90479 1.16855 1.84124 1.57241 1.41793 1.10376 1.04072 1.62034 1.19719 0.91759 0.84125 1.47886 0.87679 1.25332 0.96703 0.98937 0.96732 1.69613 1.12882 1.22148 1.48758 0.85814 0.79992 0.79843 0.78386 1.20255 1.20787 1.19312 1.21462 0.94191 0.82354 0.97352 0.91009 1.22163 0.91165 0.99822 1.05907 1.22183 0.79567 1.01823 0.98814 0.89700 0.88714 0.88552 0.87627 0.90244 0.90689 0.88289 0.75614 0.89928 0.90102 0.77006 0.91550 0.90450 0.90215 0.93934 0.90794 0.87967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.02 10.12 36.01 0.36 -0.66 16 2 C 0.51 5.09 7.80 -10.99 -0.09 5.01 16 3 O -0.55 -7.71 16.52 5.56 0.09 -7.61 16 4 N -0.61 -5.61 2.95 -172.49 -0.51 -6.12 16 5 C 0.09 0.62 6.52 -3.60 -0.02 0.59 16 6 C 0.09 0.82 6.52 -3.60 -0.02 0.79 16 7 N -0.63 -7.41 2.95 -170.63 -0.50 -7.91 16 8 C 0.71 10.74 8.21 -86.92 -0.71 10.02 16 9 O -0.58 -10.21 11.73 5.29 0.06 -10.15 16 10 N -0.73 -11.47 5.39 -66.42 -0.36 -11.83 16 11 C 0.13 2.26 6.16 -5.19 -0.03 2.23 16 12 C 0.43 9.43 7.85 -10.99 -0.09 9.35 16 13 O -0.60 -14.66 15.24 5.54 0.08 -14.57 16 14 N -0.55 -13.21 5.29 -10.96 -0.06 -13.27 16 15 C -0.31 -8.10 9.68 -14.93 -0.14 -8.24 16 16 H 0.11 2.89 7.16 -52.49 -0.38 2.52 16 17 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 18 N -0.89 -23.47 13.05 55.50 0.72 -22.75 16 19 Si 0.93 20.10 29.55 -169.99 -5.02 15.08 16 20 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 21 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 22 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 23 C 0.15 1.64 3.65 -67.48 -0.25 1.39 16 24 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 25 C -0.13 -1.58 7.58 37.16 0.28 -1.30 16 26 C 0.10 1.01 5.89 -3.60 -0.02 0.99 16 27 H 0.08 0.30 5.09 -51.93 -0.26 0.04 16 28 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.11 0.45 5.03 -51.93 -0.26 0.18 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.10 0.89 5.70 -51.93 -0.30 0.59 16 34 H 0.40 6.18 5.01 -40.82 -0.20 5.97 16 35 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 36 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 37 H 0.40 9.21 7.90 -40.82 -0.32 8.89 16 38 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 39 H 0.08 1.06 6.77 -51.93 -0.35 0.71 16 40 H 0.08 1.12 6.71 -51.93 -0.35 0.77 16 41 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 0.77 8.12 -51.93 -0.42 0.35 16 43 H 0.10 1.09 7.02 -51.93 -0.36 0.73 16 LS Contribution 347.43 15.07 5.24 5.24 Total: -1.00 -32.83 347.43 -6.81 -39.64 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: -5.73 Total: 13.52 kcal Atomic # 6 Polarization: 21.57 SS G_CDS: -0.83 Total: 20.74 kcal Atomic # 7 Polarization: -61.17 SS G_CDS: -0.70 Total: -61.87 kcal Atomic # 8 Polarization: -32.58 SS G_CDS: 0.24 Total: -32.34 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.83 -6.81 -39.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323854820.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.486 kcal (2) G-P(sol) polarization free energy of solvation -32.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds