Wall clock time and date at job start Fri Apr 10 2020 18:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.51151 * 2 1 4 4 C 1.53302 * 109.50766 * 239.90479 * 2 1 3 5 5 N 1.47152 * 108.38531 * 187.77415 * 4 2 1 6 6 C 1.34774 * 120.98315 * 230.51512 * 5 4 2 7 7 O 1.21354 * 119.99856 * 7.89858 * 6 5 4 8 8 C 1.49449 * 120.00101 * 187.89878 * 6 5 4 9 9 O 1.21351 * 119.99827 * 6.59304 * 8 6 5 10 10 N 1.34776 * 120.00222 * 186.58976 * 8 6 5 11 11 C 1.47424 * 125.64768 * 359.96448 * 10 8 6 12 12 C 1.55388 * 104.87641 * 204.16401 * 11 10 8 13 13 C 1.55158 * 101.36164 * 323.01809 * 12 11 10 14 14 O 1.42902 * 110.71657 * 277.03781 * 13 12 11 15 15 C 1.50704 * 110.71951 * 153.95026 * 13 12 11 16 16 H 1.07999 * 119.99833 * 2.43207 * 15 13 12 17 17 C 1.37875 * 119.99940 * 182.44187 * 15 13 12 18 18 N 1.31514 * 120.00243 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 120.00016 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47142 * 59.99348 * 19 17 15 21 21 H 1.48499 * 109.47394 * 179.97438 * 19 17 15 22 22 H 1.48508 * 109.46698 * 299.99426 * 19 17 15 23 23 C 1.47017 * 125.65064 * 179.97438 * 10 8 6 24 24 C 1.47152 * 118.03396 * 50.78257 * 5 4 2 25 25 C 1.53709 * 108.16429 * 309.16064 * 24 5 4 26 26 O 1.42959 * 109.51577 * 120.16287 * 2 1 3 27 27 H 1.09003 * 109.47203 * 180.09630 * 1 2 3 28 28 H 1.09002 * 109.46783 * 300.09232 * 1 2 3 29 29 H 1.08992 * 109.47189 * 60.09386 * 1 2 3 30 30 H 1.08998 * 109.68287 * 68.04855 * 4 2 1 31 31 H 1.08999 * 109.67975 * 307.49858 * 4 2 1 32 32 H 1.08999 * 110.36522 * 322.99780 * 11 10 8 33 33 H 1.08997 * 110.36898 * 85.32026 * 11 10 8 34 34 H 1.09000 * 111.18989 * 204.98217 * 12 11 10 35 35 H 1.09002 * 111.02288 * 80.97726 * 12 11 10 36 36 H 0.96707 * 114.00086 * 177.56326 * 14 13 12 37 37 H 0.97001 * 120.00626 * 180.02562 * 18 17 15 38 38 H 1.09003 * 109.87969 * 59.49250 * 23 10 8 39 39 H 1.09004 * 110.01655 * 298.40136 * 23 10 8 40 40 H 1.09000 * 109.68222 * 68.94149 * 24 5 4 41 41 H 1.09000 * 109.68002 * 189.49398 * 24 5 4 42 42 H 1.09001 * 109.65792 * 292.57485 * 25 24 5 43 43 H 1.09007 * 109.44737 * 172.37345 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0420 -0.7246 -1.2502 5 7 3.5011 -0.8757 -1.1343 6 6 4.3192 -0.5032 -2.1385 7 8 3.8720 0.0945 -3.0953 8 6 5.7769 -0.8262 -2.0737 9 8 6.2041 -1.5257 -1.1789 10 7 6.6170 -0.3406 -3.0090 11 6 6.2342 0.5166 -4.1458 12 6 7.3417 0.2847 -5.2108 13 6 8.6023 0.1488 -4.3164 14 8 9.1182 1.4359 -3.9711 15 6 9.6571 -0.6793 -5.0040 16 1 9.4859 -1.0499 -6.0039 17 6 10.8406 -0.9640 -4.3565 18 7 11.0492 -0.5125 -3.1390 19 14 12.1478 -1.9911 -5.2084 20 1 12.5764 -1.3103 -6.4567 21 1 13.3165 -2.1521 -4.3065 22 1 11.5897 -3.3269 -5.5396 23 6 8.0668 -0.5781 -3.0649 24 6 4.0402 -1.4512 0.1081 25 6 3.4314 -0.6863 1.2942 26 8 2.0076 -0.6770 1.1650 27 1 -0.3634 -1.0277 0.0017 28 1 -0.3633 0.5153 0.8892 29 1 -0.3633 0.5123 -0.8908 30 1 1.8029 -0.1388 -2.1378 31 1 1.5756 -1.7072 -1.3218 32 1 5.2627 0.2155 -4.5377 33 1 6.2138 1.5631 -3.8418 34 1 7.4287 1.1397 -5.8813 35 1 7.1596 -0.6323 -5.7712 36 1 9.8847 1.4073 -3.3820 37 1 11.8819 -0.7125 -2.6835 38 1 8.2644 -1.6471 -3.1443 39 1 8.5451 -0.1783 -2.1707 40 1 3.7718 -2.5057 0.1710 41 1 5.1252 -1.3467 0.1205 42 1 3.8031 0.3384 1.2994 43 1 3.7092 -1.1799 2.2255 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328426634.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:10 Heat of formation + Delta-G solvation = -136.858966 kcal Electronic energy + Delta-G solvation = -27246.673541 eV Core-core repulsion = 23293.018776 eV Total energy + Delta-G solvation = -3953.654765 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.86869 -39.32944 -38.10761 -37.41436 -35.09407 -34.12349 -33.16003 -32.25565 -30.23151 -28.90823 -28.06297 -27.35927 -25.58233 -23.79466 -23.29756 -22.07027 -20.92326 -19.65975 -19.08460 -17.26874 -17.03738 -17.00586 -16.53164 -16.10229 -15.75980 -15.49906 -15.24383 -14.84744 -14.68294 -14.29860 -14.23886 -13.41880 -13.16107 -13.02660 -12.99387 -12.87596 -12.57462 -12.47683 -12.23990 -12.01265 -11.76321 -11.53236 -11.43639 -11.11316 -11.04001 -10.93540 -10.71572 -10.56024 -10.49667 -10.30551 -10.19447 -9.36389 -9.00056 -8.74280 -8.68172 -8.39159 -8.09084 -6.34773 -4.43368 1.64526 2.39043 3.19510 3.25091 3.27260 3.42191 3.45625 3.64394 4.22373 4.36452 4.50046 4.74546 4.80074 4.86565 4.93413 5.04358 5.22637 5.32307 5.35445 5.43107 5.46833 5.60138 5.67473 5.77517 5.82736 5.84175 5.91503 5.98374 6.16009 6.28457 6.45670 6.71096 6.74994 6.78305 6.92353 7.02344 7.14382 7.26355 7.66986 7.70048 7.93695 7.96619 8.32032 8.60206 9.24618 9.34468 10.73063 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.028735 B = 0.003274 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.189513 B = 8551.372509 C = 9031.464804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.074 3.926 3 H 0.064 0.936 4 C 0.080 3.920 5 N -0.593 5.593 6 C 0.514 3.486 7 O -0.517 6.517 8 C 0.508 3.492 9 O -0.531 6.531 10 N -0.570 5.570 11 C 0.094 3.906 12 C -0.120 4.120 13 C 0.248 3.752 14 O -0.584 6.584 15 C -0.538 4.538 16 H 0.068 0.932 17 C 0.070 3.930 18 N -0.896 5.896 19 Si 0.905 3.095 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.275 1.275 23 C 0.098 3.902 24 C 0.040 3.960 25 C 0.048 3.952 26 O -0.381 6.381 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.102 0.898 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.384 0.616 37 H 0.272 0.728 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.150 0.850 42 H 0.055 0.945 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.007 0.442 6.166 17.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.016 3.984 3 H 0.082 0.918 4 C -0.043 4.043 5 N -0.328 5.328 6 C 0.298 3.702 7 O -0.392 6.392 8 C 0.291 3.709 9 O -0.411 6.411 10 N -0.301 5.301 11 C -0.028 4.028 12 C -0.158 4.158 13 C 0.207 3.793 14 O -0.393 6.393 15 C -0.576 4.576 16 H 0.086 0.914 17 C -0.133 4.133 18 N -0.535 5.535 19 Si 0.733 3.267 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.200 1.200 23 C -0.023 4.023 24 C -0.081 4.081 25 C -0.029 4.029 26 O -0.300 6.300 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.121 0.879 31 H 0.096 0.904 32 H 0.109 0.891 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.235 0.765 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.167 0.833 42 H 0.073 0.927 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -16.511 0.501 6.040 17.589 hybrid contribution 1.376 -0.759 -0.062 1.573 sum -15.135 -0.258 5.978 16.275 Atomic orbital electron populations 1.21726 0.92140 1.03250 1.02895 1.22460 0.95575 0.95429 0.84957 0.91842 1.22436 0.79651 1.02152 1.00014 1.47956 1.06341 1.61810 1.16690 1.20396 0.87868 0.79257 0.82671 1.90677 1.77105 1.39015 1.32452 1.19527 0.86180 0.82248 0.82944 1.90467 1.77367 1.39270 1.34037 1.48729 1.10229 1.46283 1.24877 1.22798 0.99562 0.94239 0.86227 1.22899 0.94037 1.02043 0.96773 1.19507 0.90077 0.81649 0.88030 1.86116 1.51531 1.30310 1.71333 1.21487 1.00727 1.33281 1.02101 0.91415 1.25081 0.98386 0.95116 0.94684 1.69621 1.26470 1.45495 1.11946 0.86429 0.80431 0.80483 0.79402 1.19937 1.21047 1.19996 1.23290 0.74732 1.02067 1.02172 1.23575 1.04892 0.97717 0.81929 1.23153 0.80622 1.00329 0.98835 1.87937 1.21454 1.77355 1.43228 0.91514 0.91381 0.90683 0.87940 0.90357 0.89127 0.91362 0.90206 0.90430 0.76502 0.91831 0.90836 0.90953 0.90565 0.83343 0.92684 0.87414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 9.57 37.16 0.36 -0.70 16 2 C 0.07 0.75 3.40 -26.57 -0.09 0.66 16 3 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 4 C 0.08 0.91 5.94 -3.53 -0.02 0.89 16 5 N -0.59 -8.38 3.01 -172.53 -0.52 -8.90 16 6 C 0.51 8.75 7.71 -11.59 -0.09 8.66 16 7 O -0.52 -9.26 13.24 5.49 0.07 -9.18 16 8 C 0.51 9.87 7.77 -11.59 -0.09 9.78 16 9 O -0.53 -10.80 13.53 5.50 0.07 -10.72 16 10 N -0.57 -11.78 3.33 -170.73 -0.57 -12.35 16 11 C 0.09 1.79 6.18 -2.27 -0.01 1.77 16 12 C -0.12 -2.42 6.26 -24.32 -0.15 -2.57 16 13 C 0.25 5.89 0.85 -89.94 -0.08 5.82 16 14 O -0.58 -14.44 13.07 -35.23 -0.46 -14.90 16 15 C -0.54 -13.76 8.11 -34.44 -0.28 -14.04 16 16 H 0.07 1.70 7.77 -52.49 -0.41 1.30 16 17 C 0.07 1.80 5.27 -17.82 -0.09 1.70 16 18 N -0.90 -23.16 10.96 55.43 0.61 -22.55 16 19 Si 0.91 20.05 29.54 -169.99 -5.02 15.03 16 20 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 21 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 23 C 0.10 2.29 5.38 -3.07 -0.02 2.28 16 24 C 0.04 0.52 6.17 -3.32 -0.02 0.50 16 25 C 0.05 0.52 7.00 37.53 0.26 0.78 16 26 O -0.38 -4.36 10.38 -35.23 -0.37 -4.73 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.10 1.18 7.06 -51.93 -0.37 0.81 16 31 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.09 1.63 6.00 -51.93 -0.31 1.32 16 33 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 34 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 35 H 0.08 1.50 8.04 -51.93 -0.42 1.09 16 36 H 0.38 9.68 7.23 45.56 0.33 10.01 16 37 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 38 H 0.07 1.84 7.82 -51.93 -0.41 1.44 16 39 H 0.07 1.81 8.00 -51.93 -0.42 1.39 16 40 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.15 2.22 4.48 -54.06 -0.24 1.98 16 42 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 344.10 15.07 5.19 5.19 Total: -1.00 -28.17 344.10 -6.92 -35.09 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: -5.60 Total: 12.50 kcal Atomic # 6 Polarization: 15.86 SS G_CDS: -0.33 Total: 15.53 kcal Atomic # 7 Polarization: -43.32 SS G_CDS: -0.48 Total: -43.80 kcal Atomic # 8 Polarization: -38.86 SS G_CDS: -0.68 Total: -39.54 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -28.17 -6.92 -35.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328426634.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.766 kcal (2) G-P(sol) polarization free energy of solvation -28.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds