Wall clock time and date at job start Fri Apr 10 2020 18:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.51151 * 2 1 4 4 C 1.53302 * 109.50766 * 239.90479 * 2 1 3 5 5 N 1.47152 * 108.38531 * 187.77415 * 4 2 1 6 6 C 1.34774 * 120.98315 * 230.51512 * 5 4 2 7 7 O 1.21354 * 119.99856 * 7.89858 * 6 5 4 8 8 C 1.49449 * 120.00101 * 187.89878 * 6 5 4 9 9 O 1.21351 * 119.99827 * 6.59304 * 8 6 5 10 10 N 1.34776 * 120.00222 * 186.58976 * 8 6 5 11 11 C 1.47424 * 125.64768 * 359.96448 * 10 8 6 12 12 C 1.55388 * 104.87641 * 204.16401 * 11 10 8 13 13 C 1.55158 * 101.36164 * 323.01809 * 12 11 10 14 14 O 1.42902 * 110.71657 * 277.03781 * 13 12 11 15 15 C 1.50704 * 110.71951 * 153.95026 * 13 12 11 16 16 H 1.07999 * 119.99833 * 2.43207 * 15 13 12 17 17 C 1.37875 * 119.99940 * 182.44187 * 15 13 12 18 18 N 1.31514 * 120.00243 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 120.00016 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47142 * 59.99348 * 19 17 15 21 21 H 1.48499 * 109.47394 * 179.97438 * 19 17 15 22 22 H 1.48508 * 109.46698 * 299.99426 * 19 17 15 23 23 C 1.47017 * 125.65064 * 179.97438 * 10 8 6 24 24 C 1.47152 * 118.03396 * 50.78257 * 5 4 2 25 25 C 1.53709 * 108.16429 * 309.16064 * 24 5 4 26 26 O 1.42959 * 109.51577 * 120.16287 * 2 1 3 27 27 H 1.09003 * 109.47203 * 180.09630 * 1 2 3 28 28 H 1.09002 * 109.46783 * 300.09232 * 1 2 3 29 29 H 1.08992 * 109.47189 * 60.09386 * 1 2 3 30 30 H 1.08998 * 109.68287 * 68.04855 * 4 2 1 31 31 H 1.08999 * 109.67975 * 307.49858 * 4 2 1 32 32 H 1.08999 * 110.36522 * 322.99780 * 11 10 8 33 33 H 1.08997 * 110.36898 * 85.32026 * 11 10 8 34 34 H 1.09000 * 111.18989 * 204.98217 * 12 11 10 35 35 H 1.09002 * 111.02288 * 80.97726 * 12 11 10 36 36 H 0.96707 * 114.00086 * 177.56326 * 14 13 12 37 37 H 0.97001 * 120.00626 * 180.02562 * 18 17 15 38 38 H 1.09003 * 109.87969 * 59.49250 * 23 10 8 39 39 H 1.09004 * 110.01655 * 298.40136 * 23 10 8 40 40 H 1.09000 * 109.68222 * 68.94149 * 24 5 4 41 41 H 1.09000 * 109.68002 * 189.49398 * 24 5 4 42 42 H 1.09001 * 109.65792 * 292.57485 * 25 24 5 43 43 H 1.09007 * 109.44737 * 172.37345 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0420 -0.7246 -1.2502 5 7 3.5011 -0.8757 -1.1343 6 6 4.3192 -0.5032 -2.1385 7 8 3.8720 0.0945 -3.0953 8 6 5.7769 -0.8262 -2.0737 9 8 6.2041 -1.5257 -1.1789 10 7 6.6170 -0.3406 -3.0090 11 6 6.2342 0.5166 -4.1458 12 6 7.3417 0.2847 -5.2108 13 6 8.6023 0.1488 -4.3164 14 8 9.1182 1.4359 -3.9711 15 6 9.6571 -0.6793 -5.0040 16 1 9.4859 -1.0499 -6.0039 17 6 10.8406 -0.9640 -4.3565 18 7 11.0492 -0.5125 -3.1390 19 14 12.1478 -1.9911 -5.2084 20 1 12.5764 -1.3103 -6.4567 21 1 13.3165 -2.1521 -4.3065 22 1 11.5897 -3.3269 -5.5396 23 6 8.0668 -0.5781 -3.0649 24 6 4.0402 -1.4512 0.1081 25 6 3.4314 -0.6863 1.2942 26 8 2.0076 -0.6770 1.1650 27 1 -0.3634 -1.0277 0.0017 28 1 -0.3633 0.5153 0.8892 29 1 -0.3633 0.5123 -0.8908 30 1 1.8029 -0.1388 -2.1378 31 1 1.5756 -1.7072 -1.3218 32 1 5.2627 0.2155 -4.5377 33 1 6.2138 1.5631 -3.8418 34 1 7.4287 1.1397 -5.8813 35 1 7.1596 -0.6323 -5.7712 36 1 9.8847 1.4073 -3.3820 37 1 11.8819 -0.7125 -2.6835 38 1 8.2644 -1.6471 -3.1443 39 1 8.5451 -0.1783 -2.1707 40 1 3.7718 -2.5057 0.1710 41 1 5.1252 -1.3467 0.1205 42 1 3.8031 0.3384 1.2994 43 1 3.7092 -1.1799 2.2255 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328426634.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:09 Heat of formation + Delta-G solvation = -157.692742 kcal Electronic energy + Delta-G solvation = -27247.576962 eV Core-core repulsion = 23293.018776 eV Total energy + Delta-G solvation = -3954.558186 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.20191 -40.61869 -39.42219 -39.04364 -36.52886 -35.61383 -34.22215 -33.96673 -31.93118 -29.86673 -29.78783 -28.53415 -27.24942 -25.19654 -24.37765 -23.43304 -21.99182 -21.44864 -20.45773 -19.16095 -18.41076 -18.29690 -17.61310 -17.42000 -17.23231 -16.92180 -16.56964 -16.33121 -15.90873 -15.69255 -15.43965 -14.86382 -14.84152 -14.72788 -14.37678 -14.13001 -13.90401 -13.57276 -13.45984 -13.17287 -13.13218 -12.86157 -12.78626 -12.63370 -12.40717 -12.32788 -12.27486 -12.22322 -12.03463 -11.71543 -11.27451 -11.17066 -10.68409 -10.44451 -10.28353 -9.83801 -9.71600 -8.28409 -6.44058 0.20461 1.07497 1.43748 1.44488 1.52189 1.97080 2.19556 2.38154 2.70691 2.96579 3.00945 3.58402 3.75089 3.85615 3.95870 4.01495 4.04867 4.11602 4.14240 4.31888 4.40701 4.42324 4.57009 4.64519 4.66932 4.71141 4.84989 4.88522 4.93379 4.98757 5.01580 5.07232 5.19934 5.29088 5.29679 5.42991 5.71670 5.79968 6.00584 6.08523 6.24181 6.47643 6.63275 6.79338 7.26651 7.34922 8.77831 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.028735 B = 0.003274 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.189513 B = 8551.372509 C = 9031.464804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.073 3.927 3 H 0.059 0.941 4 C 0.078 3.922 5 N -0.586 5.586 6 C 0.518 3.482 7 O -0.528 6.528 8 C 0.503 3.497 9 O -0.544 6.544 10 N -0.580 5.580 11 C 0.104 3.896 12 C -0.114 4.114 13 C 0.234 3.766 14 O -0.588 6.588 15 C -0.559 4.559 16 H 0.067 0.933 17 C 0.029 3.971 18 N -0.914 5.914 19 Si 0.964 3.036 20 H -0.270 1.270 21 H -0.283 1.283 22 H -0.273 1.273 23 C 0.117 3.883 24 C 0.039 3.961 25 C 0.053 3.947 26 O -0.387 6.387 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.090 0.910 30 H 0.104 0.896 31 H 0.093 0.907 32 H 0.106 0.894 33 H 0.069 0.931 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.378 0.622 37 H 0.272 0.728 38 H 0.048 0.952 39 H 0.046 0.954 40 H 0.085 0.915 41 H 0.128 0.872 42 H 0.053 0.947 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.789 0.187 6.163 18.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.015 3.985 3 H 0.077 0.923 4 C -0.044 4.044 5 N -0.319 5.319 6 C 0.301 3.699 7 O -0.405 6.405 8 C 0.287 3.713 9 O -0.425 6.425 10 N -0.312 5.312 11 C -0.017 4.017 12 C -0.151 4.151 13 C 0.194 3.806 14 O -0.396 6.396 15 C -0.597 4.597 16 H 0.086 0.914 17 C -0.172 4.172 18 N -0.554 5.554 19 Si 0.789 3.211 20 H -0.195 1.195 21 H -0.208 1.208 22 H -0.198 1.198 23 C -0.005 4.005 24 C -0.082 4.082 25 C -0.024 4.024 26 O -0.306 6.306 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.109 0.891 30 H 0.122 0.878 31 H 0.112 0.888 32 H 0.124 0.876 33 H 0.087 0.913 34 H 0.110 0.890 35 H 0.103 0.897 36 H 0.228 0.772 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.104 0.896 41 H 0.145 0.855 42 H 0.071 0.929 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -18.341 0.242 6.058 19.317 hybrid contribution 1.883 -0.705 0.024 2.011 sum -16.458 -0.463 6.083 17.552 Atomic orbital electron populations 1.21735 0.89826 1.03919 1.03982 1.22596 0.97295 0.94777 0.83837 0.92278 1.22707 0.77470 1.03290 1.00890 1.48076 1.07438 1.60362 1.16067 1.19835 0.86712 0.79934 0.83466 1.90663 1.76812 1.39956 1.33084 1.20130 0.87423 0.81559 0.82164 1.90485 1.78181 1.39533 1.34318 1.48746 1.09241 1.47220 1.25972 1.22781 0.99658 0.94021 0.85267 1.22898 0.92475 1.02976 0.96789 1.19700 0.91109 0.81113 0.88716 1.86106 1.51291 1.31037 1.71192 1.21783 1.01670 1.33895 1.02350 0.91432 1.25782 1.00166 0.96048 0.95249 1.69715 1.26790 1.46071 1.12784 0.85515 0.78081 0.79033 0.78463 1.19512 1.20823 1.19774 1.22791 0.76633 1.00109 1.00984 1.23562 1.03752 0.98640 0.82249 1.23171 0.80410 1.00141 0.98675 1.87947 1.21448 1.77489 1.43711 0.91042 0.90848 0.89089 0.87819 0.88848 0.87593 0.91278 0.89042 0.89661 0.77180 0.91842 0.93346 0.93512 0.89641 0.85522 0.92870 0.85112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.57 71.98 0.69 -0.94 16 2 C 0.07 1.31 3.40 30.70 0.10 1.41 16 3 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 4 C 0.08 1.59 5.94 86.36 0.51 2.10 16 5 N -0.59 -15.74 3.01 -818.11 -2.47 -18.20 16 6 C 0.52 17.18 7.71 87.27 0.67 17.85 16 7 O -0.53 -18.19 13.24 -3.26 -0.04 -18.24 16 8 C 0.50 19.66 7.77 87.27 0.68 20.34 16 9 O -0.54 -22.54 13.53 -3.25 -0.04 -22.58 16 10 N -0.58 -24.21 3.33 -812.42 -2.70 -26.91 16 11 C 0.10 3.90 6.18 87.02 0.54 4.44 16 12 C -0.11 -4.53 6.26 32.16 0.20 -4.32 16 13 C 0.23 11.26 0.85 -10.35 -0.01 11.26 16 14 O -0.59 -29.56 13.07 -148.98 -1.95 -31.51 16 15 C -0.56 -28.85 8.11 25.60 0.21 -28.65 16 16 H 0.07 3.40 7.77 -2.91 -0.02 3.38 16 17 C 0.03 1.47 5.27 84.65 0.45 1.92 16 18 N -0.91 -48.15 10.96 21.45 0.23 -47.91 16 19 Si 0.96 41.15 29.54 68.60 2.03 43.18 16 20 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 21 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 22 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 23 C 0.12 5.64 5.38 86.73 0.47 6.10 16 24 C 0.04 0.97 6.17 86.49 0.53 1.50 16 25 C 0.05 1.05 7.00 72.22 0.51 1.55 16 26 O -0.39 -7.92 10.38 -148.98 -1.55 -9.47 16 27 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.10 2.14 7.06 -2.39 -0.02 2.13 16 31 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.11 3.67 6.00 -2.39 -0.01 3.66 16 33 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 34 H 0.09 3.40 8.14 -2.39 -0.02 3.38 16 35 H 0.08 3.24 8.04 -2.39 -0.02 3.22 16 36 H 0.38 19.65 7.23 -74.05 -0.54 19.11 16 37 H 0.27 13.73 8.31 -92.71 -0.77 12.96 16 38 H 0.05 2.52 7.82 -2.39 -0.02 2.50 16 39 H 0.05 2.44 8.00 -2.38 -0.02 2.42 16 40 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.13 3.78 4.48 -36.09 -0.16 3.62 16 42 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.13 1.96 8.14 -2.38 -0.02 1.94 16 Total: -1.00 -60.04 344.10 -0.59 -60.63 By element: Atomic # 1 Polarization: 36.11 SS G_CDS: 0.35 Total: 36.46 kcal Atomic # 6 Polarization: 29.01 SS G_CDS: 5.55 Total: 34.56 kcal Atomic # 7 Polarization: -88.10 SS G_CDS: -4.93 Total: -93.03 kcal Atomic # 8 Polarization: -78.21 SS G_CDS: -3.58 Total: -81.79 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.18 kcal Total: -60.04 -0.59 -60.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328426634.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.063 kcal (2) G-P(sol) polarization free energy of solvation -60.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds