Wall clock time and date at job start Fri Apr 10 2020 18:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47212 * 2 1 4 4 O 1.21280 * 119.99781 * 0.02562 * 3 2 1 5 5 N 1.34780 * 119.99795 * 179.97438 * 3 2 1 6 6 C 1.47417 * 125.64778 * 0.03047 * 5 3 2 7 7 C 1.54918 * 104.82849 * 204.08766 * 6 5 3 8 8 C 1.55156 * 101.58012 * 322.99189 * 7 6 5 9 9 H 1.09003 * 110.71734 * 276.95531 * 8 7 6 10 10 N 1.46499 * 110.71796 * 153.86894 * 8 7 6 11 11 C 1.34777 * 120.00286 * 86.44740 * 10 8 7 12 12 O 1.21584 * 120.00183 * 0.02562 * 11 10 8 13 13 N 1.34780 * 120.00166 * 179.97438 * 11 10 8 14 14 C 1.46492 * 120.00191 * 179.97438 * 13 11 10 15 15 C 1.50702 * 109.47501 * 180.02562 * 14 13 11 16 16 O 1.21290 * 119.99417 * 0.02562 * 15 14 13 17 17 N 1.34775 * 120.00389 * 180.02562 * 15 14 13 18 18 C 1.37091 * 120.00114 * 180.02562 * 17 15 14 19 19 H 1.08008 * 120.00090 * 359.97438 * 18 17 15 20 20 C 1.38946 * 120.00121 * 180.02562 * 18 17 15 21 21 N 1.31407 * 119.99963 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00196 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47289 * 59.99328 * 22 20 18 24 24 H 1.48495 * 109.47101 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.46745 * 299.99752 * 22 20 18 26 26 C 1.47022 * 125.64445 * 179.71926 * 5 3 2 27 27 H 1.08998 * 109.47533 * 59.99628 * 1 2 3 28 28 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47153 * 299.99998 * 1 2 3 30 30 H 1.09002 * 109.47153 * 240.00002 * 2 1 3 31 31 H 1.09001 * 109.46832 * 120.00193 * 2 1 3 32 32 H 1.09003 * 110.36926 * 322.92513 * 6 5 3 33 33 H 1.09001 * 110.36695 * 85.14110 * 6 5 3 34 34 H 1.08998 * 110.99987 * 81.06623 * 7 6 5 35 35 H 1.09003 * 110.99835 * 204.87543 * 7 6 5 36 36 H 0.96999 * 119.99800 * 266.44845 * 10 8 7 37 37 H 0.97001 * 119.99354 * 0.02562 * 13 11 10 38 38 H 1.08999 * 109.47685 * 300.00477 * 14 13 11 39 39 H 1.09004 * 109.47008 * 60.00567 * 14 13 11 40 40 H 0.97000 * 119.99536 * 0.02562 * 17 15 14 41 41 H 0.97003 * 120.00093 * 180.02562 * 21 20 18 42 42 H 1.09005 * 109.87945 * 298.39569 * 26 5 3 43 43 H 1.09000 * 109.88384 * 59.55810 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 0.0005 5 7 3.3575 1.6670 0.0005 6 6 4.4210 0.6462 0.0005 7 6 5.6536 1.3578 0.6124 8 6 5.5100 2.7876 0.0273 9 1 5.9267 2.8362 -0.9788 10 7 6.1536 3.7720 0.9007 11 6 7.4687 4.0344 0.7664 12 8 8.1210 3.4544 -0.0800 13 7 8.0607 4.9404 1.5697 14 6 9.4903 5.2252 1.4240 15 6 9.9007 6.2658 2.4338 16 8 9.0798 6.7241 3.2001 17 7 11.1799 6.6872 2.4855 18 6 11.5533 7.6335 3.4044 19 1 10.8223 8.0416 4.0868 20 6 12.8719 8.0683 3.4573 21 7 13.7611 7.5721 2.6268 22 14 13.3809 9.3572 4.7100 23 1 13.1157 8.8482 6.0796 24 1 14.8298 9.6464 4.5618 25 1 12.6017 10.6012 4.4847 26 6 3.9816 2.9982 -0.0053 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3635 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 4.1299 -0.2049 0.6161 33 1 4.6351 0.3214 -1.0178 34 1 5.5953 1.3733 1.7007 35 1 6.5800 0.8898 0.2794 36 1 5.6332 4.2350 1.5758 37 1 7.5402 5.4034 2.2447 38 1 10.0616 4.3121 1.5912 39 1 9.6860 5.5973 0.4184 40 1 11.8362 6.3209 1.8724 41 1 14.6818 7.8754 2.6639 42 1 3.6987 3.5363 -0.9101 43 1 3.6675 3.5587 0.8753 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342554940.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:28 Heat of formation + Delta-G solvation = -103.464556 kcal Electronic energy + Delta-G solvation = -25005.948501 eV Core-core repulsion = 21086.034577 eV Total energy + Delta-G solvation = -3919.913924 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.163 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.66803 -39.78003 -38.37127 -37.68190 -34.52491 -34.31735 -33.68053 -33.14120 -31.40713 -30.87559 -29.22409 -27.36606 -25.18725 -24.36956 -23.17074 -21.58754 -20.76645 -19.63690 -19.51766 -18.55808 -18.00722 -17.61891 -16.90609 -16.05656 -15.85331 -15.58776 -15.46562 -15.09993 -14.59844 -14.37315 -14.18611 -14.05541 -14.00096 -13.59514 -13.38802 -13.21679 -12.70942 -12.66201 -12.43549 -12.20431 -12.08477 -12.01839 -11.79872 -11.63984 -11.58032 -11.25871 -11.11305 -10.51742 -10.33134 -10.20949 -10.12306 -9.63934 -9.30325 -9.06531 -8.69180 -8.64584 -8.11381 -6.52502 -3.94695 2.27418 2.35932 2.86387 3.12814 3.20939 3.24852 3.28131 3.73371 3.94065 4.06882 4.17290 4.35818 4.39451 4.62472 4.65443 4.76025 4.80507 4.86101 4.88115 5.00812 5.16057 5.18932 5.34729 5.39026 5.44413 5.54074 5.63118 5.72713 5.79944 5.87499 5.90174 5.97382 6.05870 6.38602 6.69201 6.97544 7.08369 7.44682 7.78962 7.90779 8.14550 8.43734 8.70345 9.03363 9.37974 9.85880 10.64204 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.044000 B = 0.001896 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.204608 B =14760.889381 C =15132.880607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.139 4.139 3 C 0.526 3.474 4 O -0.539 6.539 5 N -0.620 5.620 6 C 0.099 3.901 7 C -0.147 4.147 8 C 0.158 3.842 9 H 0.106 0.894 10 N -0.741 5.741 11 C 0.708 3.292 12 O -0.595 6.595 13 N -0.723 5.723 14 C 0.129 3.871 15 C 0.427 3.573 16 O -0.598 6.598 17 N -0.548 5.548 18 C -0.306 4.306 19 H 0.105 0.895 20 C 0.026 3.974 21 N -0.894 5.894 22 Si 0.934 3.066 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.273 1.273 26 C 0.102 3.898 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.399 0.601 37 H 0.407 0.593 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.396 0.604 41 H 0.275 0.725 42 H 0.079 0.921 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.475 -16.624 -6.254 25.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.179 4.179 3 C 0.316 3.684 4 O -0.416 6.416 5 N -0.355 5.355 6 C -0.024 4.024 7 C -0.186 4.186 8 C 0.051 3.949 9 H 0.124 0.876 10 N -0.397 5.397 11 C 0.407 3.593 12 O -0.474 6.474 13 N -0.380 5.380 14 C 0.000 4.000 15 C 0.213 3.787 16 O -0.485 6.485 17 N -0.183 5.183 18 C -0.436 4.436 19 H 0.123 0.877 20 C -0.177 4.177 21 N -0.534 5.534 22 Si 0.761 3.239 23 H -0.198 1.198 24 H -0.208 1.208 25 H -0.198 1.198 26 C -0.022 4.022 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.100 0.900 35 H 0.113 0.887 36 H 0.233 0.767 37 H 0.245 0.755 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.230 0.770 41 H 0.085 0.915 42 H 0.097 0.903 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -18.666 -16.291 -6.538 25.623 hybrid contribution 0.458 0.822 0.869 1.281 sum -18.208 -15.468 -5.669 24.555 Atomic orbital electron populations 1.21546 0.92872 1.01693 1.03447 1.21616 0.98596 0.93314 1.04359 1.20537 0.80088 0.92087 0.75724 1.90726 1.54317 1.46780 1.49756 1.48477 1.05357 1.07761 1.73954 1.22407 0.86775 0.91657 1.01536 1.23279 0.98051 0.95700 1.01577 1.21661 0.90412 0.87387 0.95471 0.87605 1.44967 1.08630 1.45840 1.40298 1.15789 0.81411 0.80246 0.81813 1.90907 1.63499 1.55007 1.38000 1.44775 1.10631 1.43558 1.39018 1.20791 0.80560 0.98957 0.99648 1.19759 0.84009 0.86964 0.87956 1.90493 1.51201 1.61435 1.45372 1.41775 1.07545 1.36355 1.32624 1.19681 0.94613 1.16303 1.12970 0.87736 1.25319 0.95490 0.98729 0.98116 1.69605 1.03807 1.43186 1.36830 0.85870 0.77365 0.80407 0.80304 1.19801 1.20847 1.19786 1.22070 0.91562 0.85327 1.03217 0.91942 0.91946 0.91931 0.88855 0.88877 0.90089 0.90630 0.90023 0.88729 0.76676 0.75521 0.89974 0.89954 0.77007 0.91528 0.90315 0.90701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 9.20 37.16 0.34 -0.52 16 2 C -0.14 -0.80 5.43 -27.88 -0.15 -0.95 16 3 C 0.53 5.01 7.85 -10.98 -0.09 4.92 16 4 O -0.54 -7.34 16.31 5.56 0.09 -7.25 16 5 N -0.62 -5.07 3.33 -170.51 -0.57 -5.64 16 6 C 0.10 0.56 6.69 -2.53 -0.02 0.55 16 7 C -0.15 -1.10 6.77 -24.58 -0.17 -1.27 16 8 C 0.16 1.44 3.23 -66.10 -0.21 1.23 16 9 H 0.11 1.09 7.69 -51.93 -0.40 0.69 16 10 N -0.74 -7.97 5.21 -56.88 -0.30 -8.27 16 11 C 0.71 10.60 8.56 -86.91 -0.74 9.85 16 12 O -0.60 -10.71 16.07 5.29 0.09 -10.63 16 13 N -0.72 -11.56 5.53 -66.42 -0.37 -11.93 16 14 C 0.13 2.32 6.15 -5.20 -0.03 2.29 16 15 C 0.43 9.63 7.85 -10.98 -0.09 9.55 16 16 O -0.60 -15.07 15.24 5.55 0.08 -14.99 16 17 N -0.55 -13.41 5.29 -10.96 -0.06 -13.47 16 18 C -0.31 -8.25 9.68 -14.94 -0.14 -8.39 16 19 H 0.10 2.93 7.16 -52.48 -0.38 2.55 16 20 C 0.03 0.69 5.50 -17.47 -0.10 0.59 16 21 N -0.89 -23.64 13.05 55.50 0.72 -22.92 16 22 Si 0.93 20.39 29.55 -169.99 -5.02 15.36 16 23 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 24 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 25 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 26 C 0.10 0.88 6.63 -3.06 -0.02 0.86 16 27 H 0.06 0.46 8.10 -51.93 -0.42 0.03 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 30 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.09 0.38 7.85 -51.93 -0.41 -0.03 16 32 H 0.08 0.31 7.48 -51.93 -0.39 -0.08 16 33 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.40 3.53 8.33 -40.82 -0.34 3.19 16 37 H 0.41 6.37 7.45 -40.82 -0.30 6.07 16 38 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 39 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 40 H 0.40 9.31 7.90 -40.82 -0.32 8.99 16 41 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 42 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.07 0.67 7.69 -51.93 -0.40 0.27 16 LS Contribution 365.62 15.07 5.51 5.51 Total: -1.00 -33.80 365.62 -7.53 -41.33 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: -6.29 Total: 14.18 kcal Atomic # 6 Polarization: 20.12 SS G_CDS: -1.42 Total: 18.70 kcal Atomic # 7 Polarization: -61.66 SS G_CDS: -0.56 Total: -62.22 kcal Atomic # 8 Polarization: -33.12 SS G_CDS: 0.26 Total: -32.86 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.80 -7.53 -41.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342554940.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.138 kcal (2) G-P(sol) polarization free energy of solvation -33.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds