Wall clock time and date at job start Fri Apr 10 2020 18:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47212 * 2 1 4 4 O 1.21280 * 119.99781 * 0.02562 * 3 2 1 5 5 N 1.34780 * 119.99795 * 179.97438 * 3 2 1 6 6 C 1.47417 * 125.64778 * 0.03047 * 5 3 2 7 7 C 1.54918 * 104.82849 * 204.08766 * 6 5 3 8 8 C 1.55156 * 101.58012 * 322.99189 * 7 6 5 9 9 H 1.09003 * 110.71734 * 276.95531 * 8 7 6 10 10 N 1.46499 * 110.71796 * 153.86894 * 8 7 6 11 11 C 1.34777 * 120.00286 * 86.44740 * 10 8 7 12 12 O 1.21584 * 120.00183 * 0.02562 * 11 10 8 13 13 N 1.34780 * 120.00166 * 179.97438 * 11 10 8 14 14 C 1.46492 * 120.00191 * 179.97438 * 13 11 10 15 15 C 1.50702 * 109.47501 * 180.02562 * 14 13 11 16 16 O 1.21290 * 119.99417 * 0.02562 * 15 14 13 17 17 N 1.34775 * 120.00389 * 180.02562 * 15 14 13 18 18 C 1.37091 * 120.00114 * 180.02562 * 17 15 14 19 19 H 1.08008 * 120.00090 * 359.97438 * 18 17 15 20 20 C 1.38946 * 120.00121 * 180.02562 * 18 17 15 21 21 N 1.31407 * 119.99963 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00196 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47289 * 59.99328 * 22 20 18 24 24 H 1.48495 * 109.47101 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.46745 * 299.99752 * 22 20 18 26 26 C 1.47022 * 125.64445 * 179.71926 * 5 3 2 27 27 H 1.08998 * 109.47533 * 59.99628 * 1 2 3 28 28 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47153 * 299.99998 * 1 2 3 30 30 H 1.09002 * 109.47153 * 240.00002 * 2 1 3 31 31 H 1.09001 * 109.46832 * 120.00193 * 2 1 3 32 32 H 1.09003 * 110.36926 * 322.92513 * 6 5 3 33 33 H 1.09001 * 110.36695 * 85.14110 * 6 5 3 34 34 H 1.08998 * 110.99987 * 81.06623 * 7 6 5 35 35 H 1.09003 * 110.99835 * 204.87543 * 7 6 5 36 36 H 0.96999 * 119.99800 * 266.44845 * 10 8 7 37 37 H 0.97001 * 119.99354 * 0.02562 * 13 11 10 38 38 H 1.08999 * 109.47685 * 300.00477 * 14 13 11 39 39 H 1.09004 * 109.47008 * 60.00567 * 14 13 11 40 40 H 0.97000 * 119.99536 * 0.02562 * 17 15 14 41 41 H 0.97003 * 120.00093 * 180.02562 * 21 20 18 42 42 H 1.09005 * 109.87945 * 298.39569 * 26 5 3 43 43 H 1.09000 * 109.88384 * 59.55810 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 0.0005 5 7 3.3575 1.6670 0.0005 6 6 4.4210 0.6462 0.0005 7 6 5.6536 1.3578 0.6124 8 6 5.5100 2.7876 0.0273 9 1 5.9267 2.8362 -0.9788 10 7 6.1536 3.7720 0.9007 11 6 7.4687 4.0344 0.7664 12 8 8.1210 3.4544 -0.0800 13 7 8.0607 4.9404 1.5697 14 6 9.4903 5.2252 1.4240 15 6 9.9007 6.2658 2.4338 16 8 9.0798 6.7241 3.2001 17 7 11.1799 6.6872 2.4855 18 6 11.5533 7.6335 3.4044 19 1 10.8223 8.0416 4.0868 20 6 12.8719 8.0683 3.4573 21 7 13.7611 7.5721 2.6268 22 14 13.3809 9.3572 4.7100 23 1 13.1157 8.8482 6.0796 24 1 14.8298 9.6464 4.5618 25 1 12.6017 10.6012 4.4847 26 6 3.9816 2.9982 -0.0053 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3635 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 4.1299 -0.2049 0.6161 33 1 4.6351 0.3214 -1.0178 34 1 5.5953 1.3733 1.7007 35 1 6.5800 0.8898 0.2794 36 1 5.6332 4.2350 1.5758 37 1 7.5402 5.4034 2.2447 38 1 10.0616 4.3121 1.5912 39 1 9.6860 5.5973 0.4184 40 1 11.8362 6.3209 1.8724 41 1 14.6818 7.8754 2.6639 42 1 3.6987 3.5363 -0.9101 43 1 3.6675 3.5587 0.8753 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342554940.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:27 Heat of formation + Delta-G solvation = -130.161193 kcal Electronic energy + Delta-G solvation = -25007.106154 eV Core-core repulsion = 21086.034577 eV Total energy + Delta-G solvation = -3921.071577 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.163 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.54184 -40.87370 -40.02391 -38.60047 -36.23447 -35.32594 -35.24918 -33.69914 -33.35723 -31.64473 -30.03867 -28.79287 -26.45533 -25.58813 -23.73060 -22.53758 -21.76800 -21.33554 -20.22071 -20.08504 -19.62569 -18.32947 -17.74263 -17.35191 -17.07746 -16.82498 -16.54243 -16.40365 -16.03120 -15.64914 -15.53808 -15.32134 -14.97302 -14.65488 -14.30905 -13.93043 -13.85103 -13.66023 -13.52869 -13.39422 -13.15021 -12.98471 -12.88415 -12.61429 -12.55634 -12.46006 -12.13297 -12.05765 -11.90107 -11.55355 -11.42613 -10.95490 -10.54382 -10.42162 -10.09344 -9.88206 -9.72983 -8.49914 -6.00077 1.38840 1.40771 1.45583 1.54996 1.59556 1.91373 2.01669 2.10376 2.29789 3.05068 3.17405 3.28716 3.32062 3.57575 3.78451 4.02186 4.15034 4.20976 4.23139 4.25548 4.30257 4.45463 4.48838 4.54728 4.69617 4.73620 4.80429 4.96879 5.02681 5.06639 5.09741 5.20421 5.31566 5.37107 5.39486 5.48008 5.89619 5.94215 6.43943 6.49481 6.99254 7.04699 7.10538 7.43622 7.52254 7.96202 8.66593 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.044000 B = 0.001896 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.204608 B =14760.889381 C =15132.880607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.132 4.132 3 C 0.518 3.482 4 O -0.591 6.591 5 N -0.619 5.619 6 C 0.103 3.897 7 C -0.142 4.142 8 C 0.157 3.843 9 H 0.096 0.904 10 N -0.726 5.726 11 C 0.710 3.290 12 O -0.624 6.624 13 N -0.725 5.725 14 C 0.143 3.857 15 C 0.432 3.568 16 O -0.625 6.625 17 N -0.559 5.559 18 C -0.339 4.339 19 H 0.086 0.914 20 C -0.009 4.009 21 N -0.915 5.915 22 Si 0.996 3.004 23 H -0.270 1.270 24 H -0.272 1.272 25 H -0.271 1.271 26 C 0.105 3.895 27 H 0.044 0.956 28 H 0.087 0.913 29 H 0.044 0.956 30 H 0.119 0.881 31 H 0.118 0.882 32 H 0.109 0.891 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.409 0.591 37 H 0.410 0.590 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.399 0.601 41 H 0.280 0.720 42 H 0.071 0.929 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.656 -18.264 -6.187 26.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.171 4.171 3 C 0.309 3.691 4 O -0.471 6.471 5 N -0.353 5.353 6 C -0.019 4.019 7 C -0.181 4.181 8 C 0.051 3.949 9 H 0.114 0.886 10 N -0.382 5.382 11 C 0.410 3.590 12 O -0.506 6.506 13 N -0.382 5.382 14 C 0.014 3.986 15 C 0.220 3.780 16 O -0.513 6.513 17 N -0.194 5.194 18 C -0.468 4.468 19 H 0.104 0.896 20 C -0.210 4.210 21 N -0.555 5.555 22 Si 0.820 3.180 23 H -0.195 1.195 24 H -0.196 1.196 25 H -0.196 1.196 26 C -0.019 4.019 27 H 0.064 0.936 28 H 0.105 0.895 29 H 0.063 0.937 30 H 0.137 0.863 31 H 0.136 0.864 32 H 0.128 0.872 33 H 0.110 0.890 34 H 0.100 0.900 35 H 0.110 0.890 36 H 0.246 0.754 37 H 0.247 0.753 38 H 0.112 0.888 39 H 0.110 0.890 40 H 0.233 0.767 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -18.862 -17.971 -6.478 26.846 hybrid contribution 0.452 1.297 0.815 1.597 sum -18.410 -16.674 -5.663 25.476 Atomic orbital electron populations 1.21554 0.93587 1.02716 1.01767 1.21691 0.97909 0.90854 1.06665 1.21322 0.79907 0.93233 0.74619 1.90702 1.55619 1.48580 1.52249 1.48575 1.05653 1.08013 1.73071 1.22577 0.84884 0.91416 1.02997 1.23222 0.98944 0.94383 1.01551 1.21733 0.90302 0.88091 0.94820 0.88617 1.44871 1.07240 1.45736 1.40348 1.15818 0.82352 0.79692 0.81163 1.90888 1.64536 1.55997 1.39131 1.44701 1.09864 1.44115 1.39516 1.20580 0.81930 0.97744 0.98309 1.20463 0.83064 0.86719 0.87794 1.90471 1.51813 1.62439 1.46620 1.41820 1.08353 1.36555 1.32702 1.19697 0.95034 1.17984 1.14097 0.89617 1.26103 0.95008 1.00247 0.99675 1.69670 1.04142 1.43949 1.37715 0.84939 0.77379 0.77804 0.77918 1.19534 1.19631 1.19609 1.21945 0.91166 0.86058 1.02729 0.93634 0.89454 0.93698 0.86330 0.86386 0.87245 0.88982 0.90044 0.89041 0.75428 0.75279 0.88810 0.89000 0.76657 0.91077 0.91051 0.91071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.20 71.98 0.66 -0.88 16 2 C -0.13 -1.15 5.43 29.85 0.16 -0.99 16 3 C 0.52 9.21 7.85 87.66 0.69 9.90 16 4 O -0.59 -16.30 16.31 -3.03 -0.05 -16.35 16 5 N -0.62 -9.05 3.33 -811.77 -2.70 -11.74 16 6 C 0.10 0.85 6.69 86.86 0.58 1.44 16 7 C -0.14 -1.84 6.77 31.99 0.22 -1.62 16 8 C 0.16 2.69 3.23 46.18 0.15 2.84 16 9 H 0.10 1.90 7.69 -2.39 -0.02 1.88 16 10 N -0.73 -14.92 5.21 -452.14 -2.36 -17.28 16 11 C 0.71 20.61 8.56 179.05 1.53 22.14 16 12 O -0.62 -21.90 16.07 -3.98 -0.06 -21.96 16 13 N -0.72 -22.64 5.53 -482.31 -2.67 -25.31 16 14 C 0.14 5.05 6.15 85.64 0.53 5.58 16 15 C 0.43 19.56 7.85 87.66 0.69 20.25 16 16 O -0.63 -31.78 15.24 -3.06 -0.05 -31.82 16 17 N -0.56 -27.65 5.29 -306.99 -1.62 -29.27 16 18 C -0.34 -18.49 9.68 84.04 0.81 -17.68 16 19 H 0.09 4.92 7.16 -2.91 -0.02 4.89 16 20 C -0.01 -0.49 5.50 84.93 0.47 -0.02 16 21 N -0.91 -48.11 13.05 21.66 0.28 -47.83 16 22 Si 1.00 41.43 29.55 68.60 2.03 43.46 16 23 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 24 H -0.27 -10.71 7.11 99.48 0.71 -10.01 16 25 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 26 C 0.11 1.75 6.63 86.73 0.57 2.33 16 27 H 0.04 0.65 8.10 -2.39 -0.02 0.63 16 28 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.04 0.65 8.10 -2.39 -0.02 0.63 16 30 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.12 0.48 7.85 -2.39 -0.02 0.47 16 32 H 0.11 0.36 7.48 -2.39 -0.02 0.34 16 33 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.41 6.85 8.33 -92.71 -0.77 6.08 16 37 H 0.41 12.59 7.45 -92.71 -0.69 11.90 16 38 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 39 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 40 H 0.40 18.94 7.90 -92.71 -0.73 18.21 16 41 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 42 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 43 H 0.07 1.25 7.69 -2.39 -0.02 1.23 16 Total: -1.00 -73.72 365.62 -1.27 -74.99 By element: Atomic # 1 Polarization: 40.97 SS G_CDS: -1.13 Total: 39.84 kcal Atomic # 6 Polarization: 36.21 SS G_CDS: 7.06 Total: 43.28 kcal Atomic # 7 Polarization: -122.36 SS G_CDS: -9.06 Total: -131.43 kcal Atomic # 8 Polarization: -69.98 SS G_CDS: -0.16 Total: -70.14 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Total: -73.72 -1.27 -74.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342554940.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.172 kcal (2) G-P(sol) polarization free energy of solvation -73.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds